Towards Effective and Efficient Context-aware Nucleus Detection in Histopathology Whole Slide Images

Nucleus detection in histopathology whole slide images (WSIs) is crucial for a broad spectrum of clinical applications. Current approaches for nucleus detection in gigapixel WSIs utilize a sliding window methodology, which overlooks boarder contextual information (eg, tissue structure) and easily leads to inaccurate predictions. To address this problem, recent studies additionally crops a large Filed-of-View (FoV) region around each sliding window to extract contextual features. However, such methods substantially increases the inference latency. In this paper, we propose an effective and efficient context-aware nucleus detection algorithm. Specifically, instead of leveraging large FoV regions, we aggregate contextual clues from off-the-shelf features of historically visited sliding windows. This design greatly reduces computational overhead. Moreover, compared to large FoV regions at a low magnification, the sliding window patches have higher magnification and provide finer-grained tissue details, thereby enhancing the detection accuracy. To further improve the efficiency, we propose a grid pooling technique to compress dense feature maps of each patch into a few contextual tokens. Finally, we craft OCELOT-seg, the first benchmark dedicated to context-aware nucleus instance segmentation. Code, dataset, and model checkpoints will be available at https://github.com/windygoo/PathContext.

CPath-Omni: A Unified Multimodal Foundation Model for Patch and Whole Slide Image Analysis in Computational Pathology

The emergence of large multimodal models (LMMs) has brought significant advancements to pathology. Previous research has primarily focused on separately training patch-level and whole-slide image (WSI)-level models, limiting the integration of learned knowledge across patches and WSIs, and resulting in redundant models. In this work, we introduce CPath-Omni, the first 15-billion-parameter LMM designed to unify both patch and WSI level image analysis, consolidating a variety of tasks at both levels, including classification, visual question answering, captioning, and visual referring prompting. Extensive experiments demonstrate that CPath-Omni achieves state-of-the-art (SOTA) performance across seven diverse tasks on 39 out of 42 datasets, outperforming or matching task-specific models trained for individual tasks. Additionally, we develop a specialized pathology CLIP-based visual processor for CPath-Omni, CPath-CLIP, which, for the first time, integrates different vision models and incorporates a large language model as a text encoder to build a more powerful CLIP model, which achieves SOTA performance on nine zero-shot and four few-shot datasets. Our findings highlight CPath-Omni's ability to unify diverse pathology tasks, demonstrating its potential to streamline and advance the field of foundation model in pathology.

AAAR-1.0: Assessing AI's Potential to Assist Research

Numerous studies have assessed the proficiency of AI systems, particularly large language models (LLMs), in facilitating everyday tasks such as email writing, question answering, and creative content generation. However, researchers face unique challenges and opportunities in leveraging LLMs for their own work, such as brainstorming research ideas, designing experiments, and writing or reviewing papers. In this study, we introduce AAAR-1.0, a benchmark dataset designed to evaluate LLM performance in three fundamental, expertise-intensive research tasks: (i) EquationInference, assessing the correctness of equations based on the contextual information in paper submissions; (ii) ExperimentDesign, designing experiments to validate research ideas and solutions; (iii) PaperWeakness, identifying weaknesses in paper submissions; and (iv) REVIEWCRITIQUE, identifying each segment in human reviews is deficient or not. AAAR-1.0 differs from prior benchmarks in two key ways: first, it is explicitly research-oriented, with tasks requiring deep domain expertise; second, it is researcher-oriented, mirroring the primary activities that researchers engage in on a daily basis. An evaluation of both open-source and proprietary LLMs reveals their potential as well as limitations in conducting sophisticated research tasks. We will keep iterating AAAR-1.0 to new versions.

FlatQuant: Flatness Matters for LLM Quantization

Recently, quantization has been widely used for the compression and acceleration of large language models~(LLMs). Due to the outliers in LLMs, it is crucial to flatten weights and activations to minimize quantization error with the equally spaced quantization points. Prior research explores various pre-quantization transformations to suppress outliers, such as per-channel scaling and Hadamard transformation. However, we observe that these transformed weights and activations can still remain steep and outspread. In this paper, we propose FlatQuant (Fast and Learnable Affine Transformation), a new post-training quantization approach to enhance flatness of weights and activations. Our approach identifies optimal affine transformations tailored to each linear layer, calibrated in hours via a lightweight objective. To reduce runtime overhead, we apply Kronecker decomposition to the transformation matrices, and fuse all operations in FlatQuant into a single kernel. Extensive experiments show that FlatQuant sets up a new state-of-the-art quantization benchmark. For instance, it achieves less than $\textbf{1}\%$ accuracy drop for W4A4 quantization on the LLaMA-3-70B model, surpassing SpinQuant by $\textbf{7.5}\%$. For inference latency, FlatQuant reduces the slowdown induced by pre-quantization transformation from 0.26x of QuaRot to merely $\textbf{0.07x}$, bringing up to $\textbf{2.3x}$ speedup for prefill and $\textbf{1.7x}$ speedup for decoding, respectively. Code is available at: \url{https://github.com/ruikangliu/FlatQuant}.

DiffCP: Ultra-Low Bit Collaborative Perception via Diffusion Model

Collaborative perception (CP) is emerging as a promising solution to the inherent limitations of stand-alone intelligence. However, current wireless communication systems are unable to support feature-level and raw-level collaborative algorithms due to their enormous bandwidth demands. In this paper, we propose DiffCP, a novel CP paradigm that utilizes a specialized diffusion model to efficiently compress the sensing information of collaborators. By incorporating both geometric and semantic conditions into the generative model, DiffCP enables feature-level collaboration with an ultra-low communication cost, advancing the practical implementation of CP systems. This paradigm can be seamlessly integrated into existing CP algorithms to enhance a wide range of downstream tasks. Through extensive experimentation, we investigate the trade-offs between communication, computation, and performance. Numerical results demonstrate that DiffCP can significantly reduce communication costs by 14.5-fold while maintaining the same performance as the state-of-the-art algorithm.

MMMU-Pro: A More Robust Multi-discipline Multimodal Understanding Benchmark

This paper introduces MMMU-Pro, a robust version of the Massive Multi-discipline Multimodal Understanding and Reasoning (MMMU) benchmark. MMMU-Pro rigorously assesses multimodal models' true understanding and reasoning capabilities through a three-step process based on MMMU: (1) filtering out questions answerable by text-only models, (2) augmenting candidate options, and (3) introducing a vision-only input setting where questions are embedded within images. This setting challenges AI to truly "see" and "read" simultaneously, testing a fundamental human cognitive skill of seamlessly integrating visual and textual information. Results show that model performance is substantially lower on MMMU-Pro than on MMMU, ranging from 16.8% to 26.9% across models. We explore the impact of OCR prompts and Chain of Thought (CoT) reasoning, finding that OCR prompts have minimal effect while CoT generally improves performance. MMMU-Pro provides a more rigorous evaluation tool, closely mimicking real-world scenarios and offering valuable directions for future research in multimodal AI.

Diffusion-Driven Semantic Communication for Generative Models with Bandwidth Constraints

Diffusion models have been extensively utilized in AI-generated content (AIGC) in recent years, thanks to the superior generation capabilities. Combining with semantic communications, diffusion models are used for tasks such as denoising, data reconstruction, and content generation. However, existing diffusion-based generative models do not consider the stringent bandwidth limitation, which limits its application in wireless communication. This paper introduces a diffusion-driven semantic communication framework with advanced VAE-based compression for bandwidth-constrained generative model. Our designed architecture utilizes the diffusion model, where the signal transmission process through the wireless channel acts as the forward process in diffusion. To reduce bandwidth requirements, we incorporate a downsampling module and a paired upsampling module based on a variational auto-encoder with reparameterization at the receiver to ensure that the recovered features conform to the Gaussian distribution. Furthermore, we derive the loss function for our proposed system and evaluate its performance through comprehensive experiments. Our experimental results demonstrate significant improvements in pixel-level metrics such as peak signal to noise ratio (PSNR) and semantic metrics like learned perceptual image patch similarity (LPIPS). These enhancements are more profound regarding the compression rates and SNR compared to deep joint source-channel coding (DJSCC).

IDAT: A Multi-Modal Dataset and Toolkit for Building and Evaluating Interactive Task-Solving Agents

Seamless interaction between AI agents and humans using natural language remains a key goal in AI research. This paper addresses the challenges of developing interactive agents capable of understanding and executing grounded natural language instructions through the IGLU competition at NeurIPS. Despite advancements, challenges such as a scarcity of appropriate datasets and the need for effective evaluation platforms persist. We introduce a scalable data collection tool for gathering interactive grounded language instructions within a Minecraft-like environment, resulting in a Multi-Modal dataset with around 9,000 utterances and over 1,000 clarification questions. Additionally, we present a Human-in-the-Loop interactive evaluation platform for qualitative analysis and comparison of agent performance through multi-turn communication with human annotators. We offer to the community these assets referred to as IDAT (IGLU Dataset And Toolkit) which aim to advance the development of intelligent, interactive AI agents and provide essential resources for further research.

C-MASS: Combinatorial Mobility-Aware Sensor Scheduling for Collaborative Perception with Second-Order Topology Approximation

Collaborative Perception (CP) has been a promising solution to address occlusions in the traffic environment by sharing sensor data among collaborative vehicles (CoV) via vehicle-to-everything (V2X) network. With limited wireless bandwidth, CP necessitates task-oriented and receiver-aware sensor scheduling to prioritize important and complementary sensor data. However, due to vehicular mobility, it is challenging and costly to obtain the up-to-date perception topology, i.e., whether a combination of CoVs can jointly detect an object. In this paper, we propose a combinatorial mobility-aware sensor scheduling (C-MASS) framework for CP with minimal communication overhead. Specifically, detections are replayed with sensor data from individual CoVs and pairs of CoVs to maintain an empirical perception topology up to the second order, which approximately represents the complete perception topology. A hybrid greedy algorithm is then proposed to solve a variant of the budgeted maximum coverage problem with a worst-case performance guarantee. The C-MASS scheduling algorithm adapts the greedy algorithm by incorporating the topological uncertainty and the unexplored time of CoVs to balance exploration and exploitation, addressing the mobility challenge. Extensive numerical experiments demonstrate the near-optimality of the proposed C-MASS framework in both edge-assisted and distributed CP configurations. The weighted recall improvements over object-level CP are 5.8% and 4.2%, respectively. Compared to distance-based and area-based greedy heuristics, the gaps to the offline optimal solutions are reduced by up to 75% and 71%, respectively.

PathGen-1.6M: 1.6 Million Pathology Image-text Pairs Generation through Multi-agent Collaboration

Vision Language Models (VLMs) like CLIP have attracted substantial attention in pathology, serving as backbones for applications such as zero-shot image classification and Whole Slide Image (WSI) analysis. Additionally, they can function as vision encoders when combined with large language models (LLMs) to support broader capabilities. Current efforts to train pathology VLMs rely on pathology image-text pairs from platforms like PubMed, YouTube, and Twitter, which provide limited, unscalable data with generally suboptimal image quality. In this work, we leverage large-scale WSI datasets like TCGA to extract numerous high-quality image patches. We then train a large multimodal model to generate captions for these images, creating PathGen-1.6M, a dataset containing 1.6 million high-quality image-caption pairs. Our approach involves multiple agent models collaborating to extract representative WSI patches, generating and refining captions to obtain high-quality image-text pairs. Extensive experiments show that integrating these generated pairs with existing datasets to train a pathology-specific CLIP model, PathGen-CLIP, significantly enhances its ability to analyze pathological images, with substantial improvements across nine pathology-related zero-shot image classification tasks and three whole-slide image tasks. Furthermore, we construct 200K instruction-tuning data based on PathGen-1.6M and integrate PathGen-CLIP with the Vicuna LLM to create more powerful multimodal models through instruction tuning. Overall, we provide a scalable pathway for high-quality data generation in pathology, paving the way for next-generation general pathology models.