AI-assisted Early Detection of Pancreatic Ductal Adenocarcinoma on Contrast-enhanced CT

Pancreatic ductal adenocarcinoma (PDAC) is one of the most common and aggressive types of pancreatic cancer. However, due to the lack of early and disease-specific symptoms, most patients with PDAC are diagnosed at an advanced disease stage. Consequently, early PDAC detection is crucial for improving patients' quality of life and expanding treatment options. In this work, we develop a coarse-to-fine approach to detect PDAC on contrast-enhanced CT scans. First, we localize and crop the region of interest from the low-resolution images, and then segment the PDAC-related structures at a finer scale. Additionally, we introduce two strategies to further boost detection performance: (1) a data-splitting strategy for model ensembling, and (2) a customized post-processing function. We participated in the PANORAMA challenge and ranked 1st place for PDAC detection with an AUROC of 0.9263 and an AP of 0.7243. Our code and models are publicly available at https://github.com/han-liu/PDAC_detection.

A Non-contrast Head CT Foundation Model for Comprehensive Neuro-Trauma Triage

Recent advancements in AI and medical imaging offer transformative potential in emergency head CT interpretation for reducing assessment times and improving accuracy in the face of an increasing request of such scans and a global shortage in radiologists. This study introduces a 3D foundation model for detecting diverse neuro-trauma findings with high accuracy and efficiency. Using large language models (LLMs) for automatic labeling, we generated comprehensive multi-label annotations for critical conditions. Our approach involved pretraining neural networks for hemorrhage subtype segmentation and brain anatomy parcellation, which were integrated into a pretrained comprehensive neuro-trauma detection network through multimodal fine-tuning. Performance evaluation against expert annotations and comparison with CT-CLIP demonstrated strong triage accuracy across major neuro-trauma findings, such as hemorrhage and midline shift, as well as less frequent critical conditions such as cerebral edema and arterial hyperdensity. The integration of neuro-specific features significantly enhanced diagnostic capabilities, achieving an average AUC of 0.861 for 16 neuro-trauma conditions. This work advances foundation models in medical imaging, serving as a benchmark for future AI-assisted neuro-trauma diagnostics in emergency radiology.

Baichuan-M1: Pushing the Medical Capability of Large Language Models

The current generation of large language models (LLMs) is typically designed for broad, general-purpose applications, while domain-specific LLMs, especially in vertical fields like medicine, remain relatively scarce. In particular, the development of highly efficient and practical LLMs for the medical domain is challenging due to the complexity of medical knowledge and the limited availability of high-quality data. To bridge this gap, we introduce Baichuan-M1, a series of large language models specifically optimized for medical applications. Unlike traditional approaches that simply continue pretraining on existing models or apply post-training to a general base model, Baichuan-M1 is trained from scratch with a dedicated focus on enhancing medical capabilities. Our model is trained on 20 trillion tokens and incorporates a range of effective training methods that strike a balance between general capabilities and medical expertise. As a result, Baichuan-M1 not only performs strongly across general domains such as mathematics and coding but also excels in specialized medical fields. We have open-sourced Baichuan-M1-14B, a mini version of our model, which can be accessed through the following links.

Transformers versus the EM Algorithm in Multi-class Clustering

LLMs demonstrate significant inference capacities in complicated machine learning tasks, using the Transformer model as its backbone. Motivated by the limited understanding of such models on the unsupervised learning problems, we study the learning guarantees of Transformers in performing multi-class clustering of the Gaussian Mixture Models. We develop a theory drawing strong connections between the Softmax Attention layers and the workflow of the EM algorithm on clustering the mixture of Gaussians. Our theory provides approximation bounds for the Expectation and Maximization steps by proving the universal approximation abilities of multivariate mappings by Softmax functions. In addition to the approximation guarantees, we also show that with a sufficient number of pre-training samples and an initialization, Transformers can achieve the minimax optimal rate for the problem considered. Our extensive simulations empirically verified our theory by revealing the strong learning capacities of Transformers even beyond the assumptions in the theory, shedding light on the powerful inference capacities of LLMs.

Transformers and Their Roles as Time Series Foundation Models

We give a comprehensive analysis of transformers as time series foundation models, focusing on their approximation and generalization capabilities. First, we demonstrate that there exist transformers that fit an autoregressive model on input univariate time series via gradient descent. We then analyze MOIRAI, a multivariate time series foundation model capable of handling an arbitrary number of covariates. We prove that it is capable of automatically fitting autoregressive models with an arbitrary number of covariates, offering insights into its design and empirical success. For generalization, we establish bounds for pretraining when the data satisfies Dobrushin's condition. Experiments support our theoretical findings, highlighting the efficacy of transformers as time series foundation models.

Automating High Quality RT Planning at Scale

Radiotherapy (RT) planning is complex, subjective, and time-intensive. Advances in artificial intelligence (AI) promise to improve its precision, efficiency, and consistency, but progress is often limited by the scarcity of large, standardized datasets. To address this, we introduce the Automated Iterative RT Planning (AIRTP) system, a scalable solution for generating high-quality treatment plans. This scalable solution is designed to generate substantial volumes of consistently high-quality treatment plans, overcoming a key obstacle in the advancement of AI-driven RT planning. Our AIRTP pipeline adheres to clinical guidelines and automates essential steps, including organ-at-risk (OAR) contouring, helper structure creation, beam setup, optimization, and plan quality improvement, using AI integrated with RT planning software like Eclipse of Varian. Furthermore, a novel approach for determining optimization parameters to reproduce 3D dose distributions, i.e. a method to convert dose predictions to deliverable treatment plans constrained by machine limitations. A comparative analysis of plan quality reveals that our automated pipeline produces treatment plans of quality comparable to those generated manually, which traditionally require several hours of labor per plan. Committed to public research, the first data release of our AIRTP pipeline includes nine cohorts covering head-and-neck and lung cancer sites to support an AAPM 2025 challenge. This data set features more than 10 times the number of plans compared to the largest existing well-curated public data set to our best knowledge. Repo:{https://github.com/RiqiangGao/GDP-HMM_AAPMChallenge}

Self Pre-training with Adaptive Mask Autoencoders for Variable-Contrast 3D Medical Imaging

The Masked Autoencoder (MAE) has recently demonstrated effectiveness in pre-training Vision Transformers (ViT) for analyzing natural images. By reconstructing complete images from partially masked inputs, the ViT encoder gathers contextual information to predict the missing regions. This capability to aggregate context is especially important in medical imaging, where anatomical structures are functionally and mechanically linked to surrounding regions. However, current methods do not consider variations in the number of input images, which is typically the case in real-world Magnetic Resonance (MR) studies. To address this limitation, we propose a 3D Adaptive Masked Autoencoders (AMAE) architecture that accommodates a variable number of 3D input contrasts per subject. A magnetic resonance imaging (MRI) dataset of 45,364 subjects was used for pretraining and a subset of 1648 training, 193 validation and 215 test subjects were used for finetuning. The performance demonstrates that self pre-training of this adaptive masked autoencoders can enhance the infarct segmentation performance by 2.8%-3.7% for ViT-based segmentation models.

Dynamic Multimodal Fusion via Meta-Learning Towards Micro-Video Recommendation

Multimodal information (e.g., visual, acoustic, and textual) has been widely used to enhance representation learning for micro-video recommendation. For integrating multimodal information into a joint representation of micro-video, multimodal fusion plays a vital role in the existing micro-video recommendation approaches. However, the static multimodal fusion used in previous studies is insufficient to model the various relationships among multimodal information of different micro-videos. In this paper, we develop a novel meta-learning-based multimodal fusion framework called Meta Multimodal Fusion (MetaMMF), which dynamically assigns parameters to the multimodal fusion function for each micro-video during its representation learning. Specifically, MetaMMF regards the multimodal fusion of each micro-video as an independent task. Based on the meta information extracted from the multimodal features of the input task, MetaMMF parameterizes a neural network as the item-specific fusion function via a meta learner. We perform extensive experiments on three benchmark datasets, demonstrating the significant improvements over several state-of-the-art multimodal recommendation models, like MMGCN, LATTICE, and InvRL. Furthermore, we lighten our model by adopting canonical polyadic decomposition to improve the training efficiency, and validate its effectiveness through experimental results. Codes are available at https://github.com/hanliu95/MetaMMF.

A Text-Based Knowledge-Embedded Soft Sensing Modeling Approach for General Industrial Process Tasks Based on Large Language Model

Data-driven soft sensors (DDSS) have become mainstream methods for predicting key performance indicators in process industries. However, DDSS development requires complex and costly customized designs tailored to various tasks during the modeling process. Moreover, DDSS are constrained to a single structured data modality, limiting their ability to incorporate additional contextual knowledge. Furthermore, DDSSs' limited representation learning leads to weak predictive performance with scarce data. To address these challenges, we propose a general framework named LLM-TKESS (large language model for text-based knowledge-embedded soft sensing), harnessing the powerful general problem-solving capabilities, cross-modal knowledge transfer abilities, and few-shot capabilities of LLM for enhanced soft sensing modeling. Specifically, an auxiliary variable series encoder (AVS Encoder) is proposed to unleash LLM's potential for capturing temporal relationships within series and spatial semantic relationships among auxiliary variables. Then, we propose a two-stage fine-tuning alignment strategy: in the first stage, employing parameter-efficient fine-tuning through autoregressive training adjusts LLM to rapidly accommodate process variable data, resulting in a soft sensing foundation model (SSFM). Subsequently, by training adapters, we adapt the SSFM to various downstream tasks without modifying its architecture. Then, we propose two text-based knowledge-embedded soft sensors, integrating new natural language modalities to overcome the limitations of pure structured data models. Furthermore, benefiting from LLM's pre-existing world knowledge, our model demonstrates outstanding predictive capabilities in small sample conditions. Using the thermal deformation of air preheater rotor as a case study, we validate through extensive experiments that LLM-TKESS exhibits outstanding performance.

Do Code LLMs Understand Design Patterns?

Code Large Language Models (LLMs) demonstrate great versatility in adapting to various downstream tasks, including code generation and completion, as well as bug detection and fixing. However, Code LLMs often fail to capture existing coding standards, leading to the generation of code that conflicts with the required design patterns for a given project. As a result, developers must post-process to adapt the generated code to the project's design norms. In this work, we empirically investigate the biases of Code LLMs in software development. Through carefully designed experiments, we assess the models' understanding of design patterns across recognition, comprehension, and generation. Our findings reveal that biases in Code LLMs significantly affect the reliability of downstream tasks.