Abstract:While Multimodal Large Language Models (MLLMs) excel at generalizing across modalities and tasks, effectively adapting them to specific downstream tasks while simultaneously retaining both general and specialized knowledge remains challenging. Although Low-Rank Adaptation (LoRA) is widely used to efficiently acquire specialized knowledge in MLLMs, it introduces substantial harmful redundancy during visual instruction tuning, which exacerbates the forgetting of general knowledge and degrades downstream task performance. To address this issue, we propose LoRASculpt to eliminate harmful redundant parameters, thereby harmonizing general and specialized knowledge. Specifically, under theoretical guarantees, we introduce sparse updates into LoRA to discard redundant parameters effectively. Furthermore, we propose a Conflict Mitigation Regularizer to refine the update trajectory of LoRA, mitigating knowledge conflicts with the pretrained weights. Extensive experimental results demonstrate that even at very high degree of sparsity ($\le$ 5%), our method simultaneously enhances generalization and downstream task performance. This confirms that our approach effectively mitigates the catastrophic forgetting issue and further promotes knowledge harmonization in MLLMs.
Abstract:LLM-based Multi-Agent Systems (MAS) have proven highly effective in solving complex problems by integrating multiple agents, each performing different roles. However, in sensitive domains, they face emerging privacy protection challenges. In this paper, we introduce the concept of Federated MAS, highlighting the fundamental differences between Federated MAS and traditional FL. We then identify key challenges in developing Federated MAS, including: 1) heterogeneous privacy protocols among agents, 2) structural differences in multi-party conversations, and 3) dynamic conversational network structures. To address these challenges, we propose Embedded Privacy-Enhancing Agents (EPEAgent), an innovative solution that integrates seamlessly into the Retrieval-Augmented Generation (RAG) phase and the context retrieval stage. This solution minimizes data flows, ensuring that only task-relevant, agent-specific information is shared. Additionally, we design and generate a comprehensive dataset to evaluate the proposed paradigm. Extensive experiments demonstrate that EPEAgent effectively enhances privacy protection while maintaining strong system performance. The code will be availiable at https://github.com/ZitongShi/EPEAgent
Abstract:Multi-modal Large Language Models (MLLMs) integrate visual and linguistic reasoning to address complex tasks such as image captioning and visual question answering. While MLLMs demonstrate remarkable versatility, MLLMs appears limited performance on special applications. But tuning MLLMs for downstream tasks encounters two key challenges: Task-Expert Specialization, where distribution shifts between pre-training and target datasets constrain target performance, and Open-World Stabilization, where catastrophic forgetting erases the model general knowledge. In this work, we systematically review recent advancements in MLLM tuning methodologies, classifying them into three paradigms: (I) Selective Tuning, (II) Additive Tuning, and (III) Reparameterization Tuning. Furthermore, we benchmark these tuning strategies across popular MLLM architectures and diverse downstream tasks to establish standardized evaluation analysis and systematic tuning principles. Finally, we highlight several open challenges in this domain and propose future research directions. To facilitate ongoing progress in this rapidly evolving field, we provide a public repository that continuously tracks developments: https://github.com/WenkeHuang/Awesome-MLLM-Tuning.
Abstract:Protein-specific large language models (Protein LLMs) are revolutionizing protein science by enabling more efficient protein structure prediction, function annotation, and design. While existing surveys focus on specific aspects or applications, this work provides the first comprehensive overview of Protein LLMs, covering their architectures, training datasets, evaluation metrics, and diverse applications. Through a systematic analysis of over 100 articles, we propose a structured taxonomy of state-of-the-art Protein LLMs, analyze how they leverage large-scale protein sequence data for improved accuracy, and explore their potential in advancing protein engineering and biomedical research. Additionally, we discuss key challenges and future directions, positioning Protein LLMs as essential tools for scientific discovery in protein science. Resources are maintained at https://github.com/Yijia-Xiao/Protein-LLM-Survey.
Abstract:The past two years have witnessed the evolution of large language model (LLM)-based multi-agent systems from labor-intensive manual design to partial automation (\textit{e.g.}, prompt engineering, communication topology) and eventually to fully automated design. However, existing agentic automation pipelines often lack LLM heterogeneity and focus on single-objective performance optimization, limiting their potential to combine weaker models for more customized and cost-effective solutions. To address this challenge, we propose EvoFlow, a niching evolutionary algorithm-based framework to automatically search a population of heterogeneous and complexity-adaptive agentic workflows, rather than a single homogeneous, complex workflow. Technically, EvoFlow performs \textit{(1) tag-based retrieval} to extract parent workflows from an agentic population, evolves new workflows through \textit{(2) crossover} and \textit{(3) mutation}, and employs \textit{(4) niching-based selection} to maintain population diversity and quality. Extensive evaluations across seven benchmarks demonstrate that EvoFlow is: \textbf{(I) diverse}, evolving a population of workflows ranging from simple I/O tasks to complex multi-turn interactions; \textbf{(II) high-performing}, outperforming previous handcrafted and automated workflows by $1.23\%\sim29.86\%$; \textbf{(III) economical}, surpassing powerful \llmname{o1-preview} at $12.4\%$ of its inference cost using weaker open-source models.
Abstract:Multimodal Large Language Model (MLLM) have demonstrated strong generalization capabilities across diverse distributions and tasks, largely due to extensive pre-training datasets. Fine-tuning MLLM has become a common practice to improve performance on specific downstream tasks. However, during fine-tuning, MLLM often faces the risk of forgetting knowledge acquired during pre-training, which can result in a decline in generalization abilities. To balance the trade-off between generalization and specialization, we propose measuring the parameter importance for both pre-trained and fine-tuning distributions, based on frozen pre-trained weight magnitude and accumulated fine-tuning gradient values. We further apply an importance-aware weight allocation strategy, selectively updating relatively important parameters for downstream tasks. We conduct empirical evaluations on both image captioning and visual question-answering tasks using various MLLM architectures. The comprehensive experimental analysis demonstrates the effectiveness of the proposed solution, highlighting the efficiency of the crucial modules in enhancing downstream specialization performance while mitigating generalization degradation in MLLM Fine-Tuning.
Abstract:Personalized Federated Graph Learning (pFGL) facilitates the decentralized training of Graph Neural Networks (GNNs) without compromising privacy while accommodating personalized requirements for non-IID participants. In cross-domain scenarios, structural heterogeneity poses significant challenges for pFGL. Nevertheless, previous pFGL methods incorrectly share non-generic knowledge globally and fail to tailor personalized solutions locally under domain structural shift. We innovatively reveal that the spectral nature of graphs can well reflect inherent domain structural shifts. Correspondingly, our method overcomes it by sharing generic spectral knowledge. Moreover, we indicate the biased message-passing schemes for graph structures and propose the personalized preference module. Combining both strategies, we propose our pFGL framework FedSSP which Shares generic Spectral knowledge while satisfying graph Preferences. Furthermore, We perform extensive experiments on cross-dataset and cross-domain settings to demonstrate the superiority of our framework. The code is available at https://github.com/OakleyTan/FedSSP.
Abstract:Recent advancements in large language model (LLM)-based agents have demonstrated that collective intelligence can significantly surpass the capabilities of individual agents, primarily due to well-crafted inter-agent communication topologies. Despite the diverse and high-performing designs available, practitioners often face confusion when selecting the most effective pipeline for their specific task: \textit{Which topology is the best choice for my task, avoiding unnecessary communication token overhead while ensuring high-quality solution?} In response to this dilemma, we introduce G-Designer, an adaptive, efficient, and robust solution for multi-agent deployment, which dynamically designs task-aware, customized communication topologies. Specifically, G-Designer models the multi-agent system as a multi-agent network, leveraging a variational graph auto-encoder to encode both the nodes (agents) and a task-specific virtual node, and decodes a task-adaptive and high-performing communication topology. Extensive experiments on six benchmarks showcase that G-Designer is: \textbf{(1) high-performing}, achieving superior results on MMLU with accuracy at $84.50\%$ and on HumanEval with pass@1 at $89.90\%$; \textbf{(2) task-adaptive}, architecting communication protocols tailored to task difficulty, reducing token consumption by up to $95.33\%$ on HumanEval; and \textbf{(3) adversarially robust}, defending against agent adversarial attacks with merely $0.3\%$ accuracy drop.
Abstract:Recent advancements in large language model (LLM)-powered agents have shown that collective intelligence can significantly outperform individual capabilities, largely attributed to the meticulously designed inter-agent communication topologies. Though impressive in performance, existing multi-agent pipelines inherently introduce substantial token overhead, as well as increased economic costs, which pose challenges for their large-scale deployments. In response to this challenge, we propose an economical, simple, and robust multi-agent communication framework, termed $\texttt{AgentPrune}$, which can seamlessly integrate into mainstream multi-agent systems and prunes redundant or even malicious communication messages. Technically, $\texttt{AgentPrune}$ is the first to identify and formally define the \textit{communication redundancy} issue present in current LLM-based multi-agent pipelines, and efficiently performs one-shot pruning on the spatial-temporal message-passing graph, yielding a token-economic and high-performing communication topology. Extensive experiments across six benchmarks demonstrate that $\texttt{AgentPrune}$ \textbf{(I)} achieves comparable results as state-of-the-art topologies at merely $\$5.6$ cost compared to their $\$43.7$, \textbf{(II)} integrates seamlessly into existing multi-agent frameworks with $28.1\%\sim72.8\%\downarrow$ token reduction, and \textbf{(III)} successfully defend against two types of agent-based adversarial attacks with $3.5\%\sim10.8\%\uparrow$ performance boost.
Abstract:Federated graph learning collaboratively learns a global graph neural network with distributed graphs, where the non-independent and identically distributed property is one of the major challenges. Most relative arts focus on traditional distributed tasks like images and voices, incapable of graph structures. This paper firstly reveals that local client distortion is brought by both node-level semantics and graph-level structure. First, for node-level semantics, we find that contrasting nodes from distinct classes is beneficial to provide a well-performing discrimination. We pull the local node towards the global node of the same class and push it away from the global node of different classes. Second, we postulate that a well-structural graph neural network possesses similarity for neighbors due to the inherent adjacency relationships. However, aligning each node with adjacent nodes hinders discrimination due to the potential class inconsistency. We transform the adjacency relationships into the similarity distribution and leverage the global model to distill the relation knowledge into the local model, which preserves the structural information and discriminability of the local model. Empirical results on three graph datasets manifest the superiority of the proposed method over its counterparts.