Identifiability Analysis of Linear ODE Systems with Hidden Confounders

The identifiability analysis of linear Ordinary Differential Equation (ODE) systems is a necessary prerequisite for making reliable causal inferences about these systems. While identifiability has been well studied in scenarios where the system is fully observable, the conditions for identifiability remain unexplored when latent variables interact with the system. This paper aims to address this gap by presenting a systematic analysis of identifiability in linear ODE systems incorporating hidden confounders. Specifically, we investigate two cases of such systems. In the first case, latent confounders exhibit no causal relationships, yet their evolution adheres to specific functional forms, such as polynomial functions of time $t$. Subsequently, we extend this analysis to encompass scenarios where hidden confounders exhibit causal dependencies, with the causal structure of latent variables described by a Directed Acyclic Graph (DAG). The second case represents a more intricate variation of the first case, prompting a more comprehensive identifiability analysis. Accordingly, we conduct detailed identifiability analyses of the second system under various observation conditions, including both continuous and discrete observations from single or multiple trajectories. To validate our theoretical results, we perform a series of simulations, which support and substantiate our findings.

Diff-CXR: Report-to-CXR generation through a disease-knowledge enhanced diffusion model

Text-To-Image (TTI) generation is significant for controlled and diverse image generation with broad potential applications. Although current medical TTI methods have made some progress in report-to-Chest-Xray (CXR) generation, their generation performance may be limited due to the intrinsic characteristics of medical data. In this paper, we propose a novel disease-knowledge enhanced Diffusion-based TTI learning framework, named Diff-CXR, for medical report-to-CXR generation. First, to minimize the negative impacts of noisy data on generation, we devise a Latent Noise Filtering Strategy that gradually learns the general patterns of anomalies and removes them in the latent space. Then, an Adaptive Vision-Aware Textual Learning Strategy is designed to learn concise and important report embeddings in a domain-specific Vision-Language Model, providing textual guidance for Chest-Xray generation. Finally, by incorporating the general disease knowledge into the pretrained TTI model via a delicate control adapter, a disease-knowledge enhanced diffusion model is introduced to achieve realistic and precise report-to-CXR generation. Experimentally, our Diff-CXR outperforms previous SOTA medical TTI methods by 33.4\% / 8.0\% and 23.8\% / 56.4\% in the FID and mAUC score on MIMIC-CXR and IU-Xray, with the lowest computational complexity at 29.641 GFLOPs. Downstream experiments on three thorax disease classification benchmarks and one CXR-report generation benchmark demonstrate that Diff-CXR is effective in improving classical CXR analysis methods. Notably, models trained on the combination of 1\% real data and synthetic data can achieve a competitive mAUC score compared to models trained on all data, presenting promising clinical applications.

TASL-Net: Tri-Attention Selective Learning Network for Intelligent Diagnosis of Bimodal Ultrasound Video

In the intelligent diagnosis of bimodal (gray-scale and contrast-enhanced) ultrasound videos, medical domain knowledge such as the way sonographers browse videos, the particular areas they emphasize, and the features they pay special attention to, plays a decisive role in facilitating precise diagnosis. Embedding medical knowledge into the deep learning network can not only enhance performance but also boost clinical confidence and reliability of the network. However, it is an intractable challenge to automatically focus on these person- and disease-specific features in videos and to enable networks to encode bimodal information comprehensively and efficiently. This paper proposes a novel Tri-Attention Selective Learning Network (TASL-Net) to tackle this challenge and automatically embed three types of diagnostic attention of sonographers into a mutual transformer framework for intelligent diagnosis of bimodal ultrasound videos. Firstly, a time-intensity-curve-based video selector is designed to mimic the temporal attention of sonographers, thus removing a large amount of redundant information while improving computational efficiency of TASL-Net. Then, to introduce the spatial attention of the sonographers for contrast-enhanced video analysis, we propose the earliest-enhanced position detector based on structural similarity variation, on which the TASL-Net is made to focus on the differences of perfusion variation inside and outside the lesion. Finally, by proposing a mutual encoding strategy that combines convolution and transformer, TASL-Net possesses bimodal attention to structure features on gray-scale videos and to perfusion variations on contrast-enhanced videos. These modules work collaboratively and contribute to superior performance. We conduct a detailed experimental validation of TASL-Net's performance on three datasets, including lung, breast, and liver.

Chest-Diffusion: A Light-Weight Text-to-Image Model for Report-to-CXR Generation

Text-to-image generation has important implications for generation of diverse and controllable images. Several attempts have been made to adapt Stable Diffusion (SD) to the medical domain. However, the large distribution difference between medical reports and natural texts, as well as high computational complexity in common stable diffusion limit the authenticity and feasibility of the generated medical images. To solve above problems, we propose a novel light-weight transformer-based diffusion model learning framework, Chest-Diffusion, for report-to-CXR generation. Chest-Diffusion employs a domain-specific text encoder to obtain accurate and expressive text features to guide image generation, improving the authenticity of the generated images. Meanwhile, we introduce a light-weight transformer architecture as the denoising model, reducing the computational complexity of the diffusion model. Experiments demonstrate that our Chest-Diffusion achieves the lowest FID score 24.456, under the computation budget of 118.918 GFLOPs, which is nearly one-third of the computational complexity of SD.

UniAudio 1.5: Large Language Model-driven Audio Codec is A Few-shot Audio Task Learner

The Large Language models (LLMs) have demonstrated supreme capabilities in text understanding and generation, but cannot be directly applied to cross-modal tasks without fine-tuning. This paper proposes a cross-modal in-context learning approach, empowering the frozen LLMs to achieve multiple audio tasks in a few-shot style without any parameter update. Specifically, we propose a novel and LLMs-driven audio codec model, LLM-Codec, to transfer the audio modality into the textual space, \textit{i.e.} representing audio tokens with words or sub-words in the vocabulary of LLMs, while keeping high audio reconstruction quality. The key idea is to reduce the modality heterogeneity between text and audio by compressing the audio modality into a well-trained LLMs token space. Thus, the audio representation can be viewed as a new \textit{foreign language}, and LLMs can learn the new \textit{foreign language} with several demonstrations. In experiments, we investigate the performance of the proposed approach across multiple audio understanding and generation tasks, \textit{e.g.} speech emotion classification, audio classification, text-to-speech generation, speech enhancement, etc. The experimental results demonstrate that the LLMs equipped with the proposed LLM-Codec, named as UniAudio 1.5, prompted by only a few examples, can achieve the expected functions in simple scenarios. It validates the feasibility and effectiveness of the proposed cross-modal in-context learning approach. To facilitate research on few-shot audio task learning and multi-modal LLMs, we have open-sourced the LLM-Codec model.

On the Foundations of Earth and Climate Foundation Models

Foundation models have enormous potential in advancing Earth and climate sciences, however, current approaches may not be optimal as they focus on a few basic features of a desirable Earth and climate foundation model. Crafting the ideal Earth foundation model, we define eleven features which would allow such a foundation model to be beneficial for any geoscientific downstream application in an environmental- and human-centric manner.We further shed light on the way forward to achieve the ideal model and to evaluate Earth foundation models. What comes after foundation models? Energy efficient adaptation, adversarial defenses, and interpretability are among the emerging directions.

Global OpenBuildingMap -- Unveiling the Mystery of Global Buildings

Understanding how buildings are distributed globally is crucial to revealing the human footprint on our home planet. This built environment affects local climate, land surface albedo, resource distribution, and many other key factors that influence well-being and human health. Despite this, quantitative and comprehensive data on the distribution and properties of buildings worldwide is lacking. To this end, by using a big data analytics approach and nearly 800,000 satellite images, we generated the highest resolution and highest accuracy building map ever created: the Global OpenBuildingMap (Global OBM). A joint analysis of building maps and solar potentials indicates that rooftop solar energy can supply the global energy consumption need at a reasonable cost. Specifically, if solar panels were placed on the roofs of all buildings, they could supply 1.1-3.3 times -- depending on the efficiency of the solar device -- the global energy consumption in 2020, which is the year with the highest consumption on record. We also identified a clear geospatial correlation between building areas and key socioeconomic variables, which indicates our global building map can serve as an important input to modeling global socioeconomic needs and drivers.

Idempotence and Perceptual Image Compression

Idempotence is the stability of image codec to re-compression. At the first glance, it is unrelated to perceptual image compression. However, we find that theoretically: 1) Conditional generative model-based perceptual codec satisfies idempotence; 2) Unconditional generative model with idempotence constraint is equivalent to conditional generative codec. Based on this newfound equivalence, we propose a new paradigm of perceptual image codec by inverting unconditional generative model with idempotence constraints. Our codec is theoretically equivalent to conditional generative codec, and it does not require training new models. Instead, it only requires a pre-trained mean-square-error codec and unconditional generative model. Empirically, we show that our proposed approach outperforms state-of-the-art methods such as HiFiC and ILLM, in terms of Fr\'echet Inception Distance (FID). The source code is provided in https://github.com/tongdaxu/Idempotence-and-Perceptual-Image-Compression.

USFM: A Universal Ultrasound Foundation Model Generalized to Tasks and Organs towards Label Efficient Image Analysis

Inadequate generality across different organs and tasks constrains the application of ultrasound (US) image analysis methods in smart healthcare. Building a universal US foundation model holds the potential to address these issues. Nevertheless, the development of such foundational models encounters intrinsic challenges in US analysis, i.e., insufficient databases, low quality, and ineffective features. In this paper, we present a universal US foundation model, named USFM, generalized to diverse tasks and organs towards label efficient US image analysis. First, a large-scale Multi-organ, Multi-center, and Multi-device US database was built, comprehensively containing over two million US images. Organ-balanced sampling was employed for unbiased learning. Then, USFM is self-supervised pre-trained on the sufficient US database. To extract the effective features from low-quality US images, we proposed a spatial-frequency dual masked image modeling method. A productive spatial noise addition-recovery approach was designed to learn meaningful US information robustly, while a novel frequency band-stop masking learning approach was also employed to extract complex, implicit grayscale distribution and textural variations. Extensive experiments were conducted on the various tasks of segmentation, classification, and image enhancement from diverse organs and diseases. Comparisons with representative US image analysis models illustrate the universality and effectiveness of USFM. The label efficiency experiments suggest the USFM obtains robust performance with only 20% annotation, laying the groundwork for the rapid development of US models in clinical practices.

Consistent and Relevant: Rethink the Query Embedding in General Sound Separation

The query-based audio separation usually employs specific queries to extract target sources from a mixture of audio signals. Currently, most query-based separation models need additional networks to obtain query embedding. In this way, separation model is optimized to be adapted to the distribution of query embedding. However, query embedding may exhibit mismatches with separation models due to inconsistent structures and independent information. In this paper, we present CaRE-SEP, a consistent and relevant embedding network for general sound separation to encourage a comprehensive reconsideration of query usage in audio separation. CaRE-SEP alleviates the potential mismatch between queries and separation in two aspects, including sharing network structure and sharing feature information. First, a Swin-Unet model with a shared encoder is conducted to unify query encoding and sound separation into one model, eliminating the network architecture difference and generating consistent distribution of query and separation features. Second, by initializing CaRE-SEP with a pretrained classification network and allowing gradient backpropagation, the query embedding is optimized to be relevant to the separation feature, further alleviating the feature mismatch problem. Experimental results indicate the proposed CaRE-SEP model substantially improves the performance of separation tasks. Moreover, visualizations validate the potential mismatch and how CaRE-SEP solves it.