Gradient Rewiring for Editable Graph Neural Network Training

Deep neural networks are ubiquitously adopted in many applications, such as computer vision, natural language processing, and graph analytics. However, well-trained neural networks can make prediction errors after deployment as the world changes. \textit{Model editing} involves updating the base model to correct prediction errors with less accessible training data and computational resources. Despite recent advances in model editors in computer vision and natural language processing, editable training in graph neural networks (GNNs) is rarely explored. The challenge with editable GNN training lies in the inherent information aggregation across neighbors, which can lead model editors to affect the predictions of other nodes unintentionally. In this paper, we first observe the gradient of cross-entropy loss for the target node and training nodes with significant inconsistency, which indicates that directly fine-tuning the base model using the loss on the target node deteriorates the performance on training nodes. Motivated by the gradient inconsistency observation, we propose a simple yet effective \underline{G}radient \underline{R}ewiring method for \underline{E}ditable graph neural network training, named \textbf{GRE}. Specifically, we first store the anchor gradient of the loss on training nodes to preserve the locality. Subsequently, we rewire the gradient of the loss on the target node to preserve performance on the training node using anchor gradient. Experiments demonstrate the effectiveness of GRE on various model architectures and graph datasets in terms of multiple editing situations. The source code is available at \url{https://github.com/zhimengj0326/Gradient_rewiring_editing}

Weighted Diversified Sampling for Efficient Data-Driven Single-Cell Gene-Gene Interaction Discovery

Gene-gene interactions play a crucial role in the manifestation of complex human diseases. Uncovering significant gene-gene interactions is a challenging task. Here, we present an innovative approach utilizing data-driven computational tools, leveraging an advanced Transformer model, to unearth noteworthy gene-gene interactions. Despite the efficacy of Transformer models, their parameter intensity presents a bottleneck in data ingestion, hindering data efficiency. To mitigate this, we introduce a novel weighted diversified sampling algorithm. This algorithm computes the diversity score of each data sample in just two passes of the dataset, facilitating efficient subset generation for interaction discovery. Our extensive experimentation demonstrates that by sampling a mere 1\% of the single-cell dataset, we achieve performance comparable to that of utilizing the entire dataset.

Learning to Route with Confidence Tokens

Large language models (LLMs) have demonstrated impressive performance on several tasks and are increasingly deployed in real-world applications. However, especially in high-stakes settings, it becomes vital to know when the output of an LLM may be unreliable. Depending on whether an answer is trustworthy, a system can then choose to route the question to another expert, or otherwise fall back on a safe default behavior. In this work, we study the extent to which LLMs can reliably indicate confidence in their answers, and how this notion of confidence can translate into downstream accuracy gains. We propose Self-REF, a lightweight training strategy to teach LLMs to express confidence in whether their answers are correct in a reliable manner. Self-REF introduces confidence tokens into the LLM, from which a confidence score can be extracted. Compared to conventional approaches such as verbalizing confidence and examining token probabilities, we demonstrate empirically that confidence tokens show significant improvements in downstream routing and rejection learning tasks.

Taylor Unswift: Secured Weight Release for Large Language Models via Taylor Expansion

Ensuring the security of released large language models (LLMs) poses a significant dilemma, as existing mechanisms either compromise ownership rights or raise data privacy concerns. To address this dilemma, we introduce TaylorMLP to protect the ownership of released LLMs and prevent their abuse. Specifically, TaylorMLP preserves the ownership of LLMs by transforming the weights of LLMs into parameters of Taylor-series. Instead of releasing the original weights, developers can release the Taylor-series parameters with users, thereby ensuring the security of LLMs. Moreover, TaylorMLP can prevent abuse of LLMs by adjusting the generation speed. It can induce low-speed token generation for the protected LLMs by increasing the terms in the Taylor-series. This intentional delay helps LLM developers prevent potential large-scale unauthorized uses of their models. Empirical experiments across five datasets and three LLM architectures demonstrate that TaylorMLP induces over 4x increase in latency, producing the tokens precisely matched with original LLMs. Subsequent defensive experiments further confirm that TaylorMLP effectively prevents users from reconstructing the weight values based on downstream datasets.

Enhancing Large Language Models with Domain-specific Retrieval Augment Generation: A Case Study on Long-form Consumer Health Question Answering in Ophthalmology

Despite the potential of Large Language Models (LLMs) in medicine, they may generate responses lacking supporting evidence or based on hallucinated evidence. While Retrieval Augment Generation (RAG) is popular to address this issue, few studies implemented and evaluated RAG in downstream domain-specific applications. We developed a RAG pipeline with 70,000 ophthalmology-specific documents that retrieve relevant documents to augment LLMs during inference time. In a case study on long-form consumer health questions, we systematically evaluated the responses including over 500 references of LLMs with and without RAG on 100 questions with 10 healthcare professionals. The evaluation focuses on factuality of evidence, selection and ranking of evidence, attribution of evidence, and answer accuracy and completeness. LLMs without RAG provided 252 references in total. Of which, 45.3% hallucinated, 34.1% consisted of minor errors, and 20.6% were correct. In contrast, LLMs with RAG significantly improved accuracy (54.5% being correct) and reduced error rates (18.8% with minor hallucinations and 26.7% with errors). 62.5% of the top 10 documents retrieved by RAG were selected as the top references in the LLM response, with an average ranking of 4.9. The use of RAG also improved evidence attribution (increasing from 1.85 to 2.49 on a 5-point scale, P<0.001), albeit with slight decreases in accuracy (from 3.52 to 3.23, P=0.03) and completeness (from 3.47 to 3.27, P=0.17). The results demonstrate that LLMs frequently exhibited hallucinated and erroneous evidence in the responses, raising concerns for downstream applications in the medical domain. RAG substantially reduced the proportion of such evidence but encountered challenges.

DHP Benchmark: Are LLMs Good NLG Evaluators?

Large Language Models (LLMs) are increasingly serving as evaluators in Natural Language Generation (NLG) tasks. However, the capabilities of LLMs in scoring NLG quality remain inadequately explored. Current studies depend on human assessments and simple metrics that fail to capture the discernment of LLMs across diverse NLG tasks. To address this gap, we propose the Discernment of Hierarchical Perturbation (DHP) benchmarking framework, which provides quantitative discernment scores for LLMs utilizing hierarchically perturbed text data and statistical tests to measure the NLG evaluation capabilities of LLMs systematically. We have re-established six evaluation datasets for this benchmark, covering four NLG tasks: Summarization, Story Completion, Question Answering, and Translation. Our comprehensive benchmarking of five major LLM series provides critical insight into their strengths and limitations as NLG evaluators.

Assessing and Enhancing Large Language Models in Rare Disease Question-answering

Despite the impressive capabilities of Large Language Models (LLMs) in general medical domains, questions remain about their performance in diagnosing rare diseases. To answer this question, we aim to assess the diagnostic performance of LLMs in rare diseases, and explore methods to enhance their effectiveness in this area. In this work, we introduce a rare disease question-answering (ReDis-QA) dataset to evaluate the performance of LLMs in diagnosing rare diseases. Specifically, we collected 1360 high-quality question-answer pairs within the ReDis-QA dataset, covering 205 rare diseases. Additionally, we annotated meta-data for each question, facilitating the extraction of subsets specific to any given disease and its property. Based on the ReDis-QA dataset, we benchmarked several open-source LLMs, revealing that diagnosing rare diseases remains a significant challenge for these models. To facilitate retrieval augmentation generation for rare disease diagnosis, we collect the first rare diseases corpus (ReCOP), sourced from the National Organization for Rare Disorders (NORD) database. Specifically, we split the report of each rare disease into multiple chunks, each representing a different property of the disease, including their overview, symptoms, causes, effects, related disorders, diagnosis, and standard therapies. This structure ensures that the information within each chunk aligns consistently with a question. Experiment results demonstrate that ReCOP can effectively improve the accuracy of LLMs on the ReDis-QA dataset by an average of 8%. Moreover, it significantly guides LLMs to generate trustworthy answers and explanations that can be traced back to existing literature.

KV Cache Compression, But What Must We Give in Return? A Comprehensive Benchmark of Long Context Capable Approaches

Long context capability is a crucial competency for large language models (LLMs) as it mitigates the human struggle to digest long-form texts. This capability enables complex task-solving scenarios such as book summarization, code assistance, and many more tasks that are traditionally manpower-intensive. However, transformer-based LLMs face significant challenges with long context input due to the growing size of the KV cache and the intrinsic complexity of attending to extended inputs; where multiple schools of efficiency-driven approaches -- such as KV cache quantization, token dropping, prompt compression, linear-time sequence models, and hybrid architectures -- have been proposed to produce efficient yet long context-capable models. Despite these advancements, no existing work has comprehensively benchmarked these methods in a reasonably aligned environment. In this work, we fill this gap by providing a taxonomy of current methods and evaluating 10+ state-of-the-art approaches across seven categories of long context tasks. Our work reveals numerous previously unknown phenomena and offers insights -- as well as a friendly workbench -- for the future development of long context-capable LLMs. The source code will be available at https://github.com/henryzhongsc/longctx_bench

Understanding Different Design Choices in Training Large Time Series Models

Inspired by Large Language Models (LLMs), Time Series Forecasting (TSF), a long-standing task in time series analysis, is undergoing a transition towards Large Time Series Models (LTSMs), aiming to train universal transformer-based models for TSF. However, training LTSMs on heterogeneous time series data poses unique challenges, including diverse frequencies, dimensions, and patterns across datasets. Recent endeavors have studied and evaluated various design choices aimed at enhancing LTSM training and generalization capabilities, spanning pre-processing techniques, model configurations, and dataset configurations. In this work, we comprehensively analyze these design choices and aim to identify the best practices for training LTSM. Moreover, we propose \emph{time series prompt}, a novel statistical prompting strategy tailored to time series data. Furthermore, based on the observations in our analysis, we introduce \texttt{LTSM-bundle}, which bundles the best design choices we have identified. Empirical results demonstrate that \texttt{LTSM-bundle} achieves superior zero-shot and few-shot performances compared to state-of-the-art LSTMs and traditional TSF methods on benchmark datasets.

CrisisSense-LLM: Instruction Fine-Tuned Large Language Model for Multi-label Social Media Text Classification in Disaster Informatics

In the field of crisis/disaster informatics, social media is increasingly being used for improving situational awareness to inform response and relief efforts. Efficient and accurate text classification tools have been a focal area of investigation in crisis informatics. However, current methods mostly rely on single-label text classification models, which fails to capture different insights embedded in dynamic and multifaceted disaster-related social media data. This study introduces a novel approach to disaster text classification by enhancing a pre-trained Large Language Model (LLM) through instruction fine-tuning targeted for multi-label classification of disaster-related tweets. Our methodology involves creating a comprehensive instruction dataset from disaster-related tweets, which is then used to fine-tune an open-source LLM, thereby embedding it with disaster-specific knowledge. This fine-tuned model can classify multiple aspects of disaster-related information simultaneously, such as the type of event, informativeness, and involvement of human aid, significantly improving the utility of social media data for situational awareness in disasters. The results demonstrate that this approach enhances the categorization of critical information from social media posts, thereby facilitating a more effective deployment for situational awareness during emergencies. This research paves the way for more advanced, adaptable, and robust disaster management tools, leveraging the capabilities of LLMs to improve real-time situational awareness and response strategies in disaster scenarios.