From Hypothesis to Publication: A Comprehensive Survey of AI-Driven Research Support Systems

Research is a fundamental process driving the advancement of human civilization, yet it demands substantial time and effort from researchers. In recent years, the rapid development of artificial intelligence (AI) technologies has inspired researchers to explore how AI can accelerate and enhance research. To monitor relevant advancements, this paper presents a systematic review of the progress in this domain. Specifically, we organize the relevant studies into three main categories: hypothesis formulation, hypothesis validation, and manuscript publication. Hypothesis formulation involves knowledge synthesis and hypothesis generation. Hypothesis validation includes the verification of scientific claims, theorem proving, and experiment validation. Manuscript publication encompasses manuscript writing and the peer review process. Furthermore, we identify and discuss the current challenges faced in these areas, as well as potential future directions for research. Finally, we also offer a comprehensive overview of existing benchmarks and tools across various domains that support the integration of AI into the research process. We hope this paper serves as an introduction for beginners and fosters future research. Resources have been made publicly available at https://github.com/zkzhou126/AI-for-Research.

FACT-AUDIT: An Adaptive Multi-Agent Framework for Dynamic Fact-Checking Evaluation of Large Language Models

Large Language Models (LLMs) have significantly advanced the fact-checking studies. However, existing automated fact-checking evaluation methods rely on static datasets and classification metrics, which fail to automatically evaluate the justification production and uncover the nuanced limitations of LLMs in fact-checking. In this work, we introduce FACT-AUDIT, an agent-driven framework that adaptively and dynamically assesses LLMs' fact-checking capabilities. Leveraging importance sampling principles and multi-agent collaboration, FACT-AUDIT generates adaptive and scalable datasets, performs iterative model-centric evaluations, and updates assessments based on model-specific responses. By incorporating justification production alongside verdict prediction, this framework provides a comprehensive and evolving audit of LLMs' factual reasoning capabilities, to investigate their trustworthiness. Extensive experiments demonstrate that FACT-AUDIT effectively differentiates among state-of-the-art LLMs, providing valuable insights into model strengths and limitations in model-centric fact-checking analysis.

TensorLLM: Tensorising Multi-Head Attention for Enhanced Reasoning and Compression in LLMs

The reasoning abilities of Large Language Models (LLMs) can be improved by structurally denoising their weights, yet existing techniques primarily focus on denoising the feed-forward network (FFN) of the transformer block, and can not efficiently utilise the Multi-head Attention (MHA) block, which is the core of transformer architectures. To address this issue, we propose a novel intuitive framework that, at its very core, performs MHA compression through a multi-head tensorisation process and the Tucker decomposition. This enables both higher-dimensional structured denoising and compression of the MHA weights, by enforcing a shared higher-dimensional subspace across the weights of the multiple attention heads. We demonstrate that this approach consistently enhances the reasoning capabilities of LLMs across multiple benchmark datasets, and for both encoder-only and decoder-only architectures, while achieving compression rates of up to $\sim 250$ times in the MHA weights, all without requiring any additional data, training, or fine-tuning. Furthermore, we show that the proposed method can be seamlessly combined with existing FFN-only-based denoising techniques to achieve further improvements in LLM reasoning performance.

Length Controlled Generation for Black-box LLMs

Large language models (LLMs) have demonstrated impressive instruction following capabilities, while still struggling to accurately manage the length of the generated text, which is a fundamental requirement in many real-world applications. Existing length control methods involve fine-tuning the parameters of LLMs, which is inefficient and suboptimal for practical use. In this paper, we propose a novel iterative sampling framework for text length control, integrating the Metropolis-Hastings algorithm with an importance sampling acceleration strategy. This framework efficiently and reliably regulates LLMs to generate length-constrained text without modifying the underlying parameters, thereby preserving the original capabilities of LLMs. Experimental results demonstrate that our framework achieves almost 100\% success rates of length control on Llama3.1 for tasks such as length-controlled abstractive summarization and length-constrained instruction following, with minimal additional computational overhead. This also highlights the significant potential of our method for precise length control across a broader range of applications, without compromising the versatility of LLMs.

Learning Pore-scale Multi-phase Flow from Experimental Data with Graph Neural Network

Understanding the process of multiphase fluid flow through porous media is crucial for many climate change mitigation technologies, including CO$_2$ geological storage, hydrogen storage, and fuel cells. However, current numerical models are often incapable of accurately capturing the complex pore-scale physics observed in experiments. In this study, we address this challenge using a graph neural network-based approach and directly learn pore-scale fluid flow using micro-CT experimental data. We propose a Long-Short-Edge MeshGraphNet (LSE-MGN) that predicts the state of each node in the pore space at each time step. During inference, given an initial state, the model can autoregressively predict the evolution of the multiphase flow process over time. This approach successfully captures the physics from the high-resolution experimental data while maintaining computational efficiency, providing a promising direction for accurate and efficient pore-scale modeling of complex multiphase fluid flow dynamics.

Discrete Modeling via Boundary Conditional Diffusion Processes

We present an novel framework for efficiently and effectively extending the powerful continuous diffusion processes to discrete modeling. Previous approaches have suffered from the discrepancy between discrete data and continuous modeling. Our study reveals that the absence of guidance from discrete boundaries in learning probability contours is one of the main reasons. To address this issue, we propose a two-step forward process that first estimates the boundary as a prior distribution and then rescales the forward trajectory to construct a boundary conditional diffusion model. The reverse process is proportionally adjusted to guarantee that the learned contours yield more precise discrete data. Experimental results indicate that our approach achieves strong performance in both language modeling and discrete image generation tasks. In language modeling, our approach surpasses previous state-of-the-art continuous diffusion language models in three translation tasks and a summarization task, while also demonstrating competitive performance compared to auto-regressive transformers. Moreover, our method achieves comparable results to continuous diffusion models when using discrete ordinal pixels and establishes a new state-of-the-art for categorical image generation on the Cifar-10 dataset.

Learning Fine-Grained Grounded Citations for Attributed Large Language Models

Despite the impressive performance on information-seeking tasks, large language models (LLMs) still struggle with hallucinations. Attributed LLMs, which augment generated text with in-line citations, have shown potential in mitigating hallucinations and improving verifiability. However, current approaches suffer from suboptimal citation quality due to their reliance on in-context learning. Furthermore, the practice of citing only coarse document identifiers makes it challenging for users to perform fine-grained verification. In this work, we introduce FRONT, a training framework designed to teach LLMs to generate Fine-Grained Grounded Citations. By grounding model outputs in fine-grained supporting quotes, these quotes guide the generation of grounded and consistent responses, not only improving citation quality but also facilitating fine-grained verification. Experiments on the ALCE benchmark demonstrate the efficacy of FRONT in generating superior grounded responses and highly supportive citations. With LLaMA-2-7B, the framework significantly outperforms all the baselines, achieving an average of 14.21% improvement in citation quality across all datasets, even surpassing ChatGPT.

Investigating and Mitigating the Multimodal Hallucination Snowballing in Large Vision-Language Models

Though advanced in understanding visual information with human languages, Large Vision-Language Models (LVLMs) still suffer from multimodal hallucinations. A natural concern is that during multimodal interaction, the generated hallucinations could influence the LVLMs' subsequent generation. Thus, we raise a question: When presented with a query relevant to the previously generated hallucination, will LVLMs be misled and respond incorrectly, even though the ground visual information exists? To answer this, we propose a framework called MMHalSnowball to evaluate LVLMs' behaviors when encountering generated hallucinations, where LVLMs are required to answer specific visual questions within a curated hallucinatory conversation. Crucially, our experiment shows that the performance of open-source LVLMs drops by at least $31\%$, indicating that LVLMs are prone to accept the generated hallucinations and make false claims that they would not have supported without distractions. We term this phenomenon Multimodal Hallucination Snowballing. To mitigate this, we further propose a training-free method called Residual Visual Decoding, where we revise the output distribution of LVLMs with the one derived from the residual visual input, providing models with direct access to the visual information. Experiments show that our method can mitigate more than $24\%$ of the snowballed multimodal hallucination while maintaining capabilities.

An Information Bottleneck Perspective for Effective Noise Filtering on Retrieval-Augmented Generation

Retrieval-augmented generation integrates the capabilities of large language models with relevant information retrieved from an extensive corpus, yet encounters challenges when confronted with real-world noisy data. One recent solution is to train a filter module to find relevant content but only achieve suboptimal noise compression. In this paper, we propose to introduce the information bottleneck theory into retrieval-augmented generation. Our approach involves the filtration of noise by simultaneously maximizing the mutual information between compression and ground output, while minimizing the mutual information between compression and retrieved passage. In addition, we derive the formula of information bottleneck to facilitate its application in novel comprehensive evaluations, the selection of supervised fine-tuning data, and the construction of reinforcement learning rewards. Experimental results demonstrate that our approach achieves significant improvements across various question answering datasets, not only in terms of the correctness of answer generation but also in the conciseness with $2.5\%$ compression rate.

Seed Optimization with Frozen Generator for Superior Zero-shot Low-light Enhancement

In this work, we observe that the generators, which are pre-trained on massive natural images, inherently hold the promising potential for superior low-light image enhancement against varying scenarios.Specifically, we embed a pre-trained generator to Retinex model to produce reflectance maps with enhanced detail and vividness, thereby recovering features degraded by low-light conditions.Taking one step further, we introduce a novel optimization strategy, which backpropagates the gradients to the input seeds rather than the parameters of the low-light enhancement model, thus intactly retaining the generative knowledge learned from natural images and achieving faster convergence speed. Benefiting from the pre-trained knowledge and seed-optimization strategy, the low-light enhancement model can significantly regularize the realness and fidelity of the enhanced result, thus rapidly generating high-quality images without training on any low-light dataset. Extensive experiments on various benchmarks demonstrate the superiority of the proposed method over numerous state-of-the-art methods qualitatively and quantitatively.