Extending Sequence Length is Not All You Need: Effective Integration of Multimodal Signals for Gene Expression Prediction

Gene expression prediction, which predicts mRNA expression levels from DNA sequences, presents significant challenges. Previous works often focus on extending input sequence length to locate distal enhancers, which may influence target genes from hundreds of kilobases away. Our work first reveals that for current models, long sequence modeling can decrease performance. Even carefully designed algorithms only mitigate the performance degradation caused by long sequences. Instead, we find that proximal multimodal epigenomic signals near target genes prove more essential. Hence we focus on how to better integrate these signals, which has been overlooked. We find that different signal types serve distinct biological roles, with some directly marking active regulatory elements while others reflect background chromatin patterns that may introduce confounding effects. Simple concatenation may lead models to develop spurious associations with these background patterns. To address this challenge, we propose Prism, a framework that learns multiple combinations of high-dimensional epigenomic features to represent distinct background chromatin states and uses backdoor adjustment to mitigate confounding effects. Our experimental results demonstrate that proper modeling of multimodal epigenomic signals achieves state-of-the-art performance using only short sequences for gene expression prediction.

Diffusion LMs Can Approximate Optimal Infilling Lengths Implicitly

Diffusion language models (DLMs) provide a bidirectional generation framework naturally suited for infilling, yet their performance is constrained by the pre-specified infilling length. In this paper, we reveal that DLMs possess an inherent ability to discover the correct infilling length. We identify two key statistical phenomena in the first-step denoising confidence: a local \textit{Oracle Peak} that emerges near the ground-truth length and a systematic \textit{Length Bias} that often obscures this signal. By leveraging this signal and calibrating the bias, our training-free method \textbf{CAL} (\textbf{C}alibrated \textbf{A}daptive \textbf{L}ength) enables DLMs to approximate the optimal length through an efficient search before formal decoding. Empirical evaluations demonstrate that CAL improves Pass@1 by up to 47.7\% over fixed-length baselines and 40.5\% over chat-based adaptive methods in code infilling, while boosting BLEU-2 and ROUGE-L by up to 8.5\% and 9.9\% in text infilling. These results demonstrate that CAL paves the way for robust DLM infilling without requiring any specialized training. Code is available at https://github.com/NiuHechang/Calibrated_Adaptive_Length.

LongCat-Flash-Thinking-2601 Technical Report

We introduce LongCat-Flash-Thinking-2601, a 560-billion-parameter open-source Mixture-of-Experts (MoE) reasoning model with superior agentic reasoning capability. LongCat-Flash-Thinking-2601 achieves state-of-the-art performance among open-source models on a wide range of agentic benchmarks, including agentic search, agentic tool use, and tool-integrated reasoning. Beyond benchmark performance, the model demonstrates strong generalization to complex tool interactions and robust behavior under noisy real-world environments. Its advanced capability stems from a unified training framework that combines domain-parallel expert training with subsequent fusion, together with an end-to-end co-design of data construction, environments, algorithms, and infrastructure spanning from pre-training to post-training. In particular, the model's strong generalization capability in complex tool-use are driven by our in-depth exploration of environment scaling and principled task construction. To optimize long-tailed, skewed generation and multi-turn agentic interactions, and to enable stable training across over 10,000 environments spanning more than 20 domains, we systematically extend our asynchronous reinforcement learning framework, DORA, for stable and efficient large-scale multi-environment training. Furthermore, recognizing that real-world tasks are inherently noisy, we conduct a systematic analysis and decomposition of real-world noise patterns, and design targeted training procedures to explicitly incorporate such imperfections into the training process, resulting in improved robustness for real-world applications. To further enhance performance on complex reasoning tasks, we introduce a Heavy Thinking mode that enables effective test-time scaling by jointly expanding reasoning depth and width through intensive parallel thinking.

Sparse Threats, Focused Defense: Criticality-Aware Robust Reinforcement Learning for Safe Autonomous Driving

Reinforcement learning (RL) has shown considerable potential in autonomous driving (AD), yet its vulnerability to perturbations remains a critical barrier to real-world deployment. As a primary countermeasure, adversarial training improves policy robustness by training the AD agent in the presence of an adversary that deliberately introduces perturbations. Existing approaches typically model the interaction as a zero-sum game with continuous attacks. However, such designs overlook the inherent asymmetry between the agent and the adversary and then fail to reflect the sparsity of safety-critical risks, rendering the achieved robustness inadequate for practical AD scenarios. To address these limitations, we introduce criticality-aware robust RL (CARRL), a novel adversarial training approach for handling sparse, safety-critical risks in autonomous driving. CARRL consists of two interacting components: a risk exposure adversary (REA) and a risk-targeted robust agent (RTRA). We model the interaction between the REA and RTRA as a general-sum game, allowing the REA to focus on exposing safety-critical failures (e.g., collisions) while the RTRA learns to balance safety with driving efficiency. The REA employs a decoupled optimization mechanism to better identify and exploit sparse safety-critical moments under a constrained budget. However, such focused attacks inevitably result in a scarcity of adversarial data. The RTRA copes with this scarcity by jointly leveraging benign and adversarial experiences via a dual replay buffer and enforces policy consistency under perturbations to stabilize behavior. Experimental results demonstrate that our approach reduces the collision rate by at least 22.66\% across all cases compared to state-of-the-art baseline methods.

Hadamax Encoding: Elevating Performance in Model-Free Atari

Neural network architectures have a large impact in machine learning. In reinforcement learning, network architectures have remained notably simple, as changes often lead to small gains in performance. This work introduces a novel encoder architecture for pixel-based model-free reinforcement learning. The Hadamax (\textbf{Hada}mard \textbf{max}-pooling) encoder achieves state-of-the-art performance by max-pooling Hadamard products between GELU-activated parallel hidden layers. Based on the recent PQN algorithm, the Hadamax encoder achieves state-of-the-art model-free performance in the Atari-57 benchmark. Specifically, without applying any algorithmic hyperparameter modifications, Hadamax-PQN achieves an 80\% performance gain over vanilla PQN and significantly surpasses Rainbow-DQN. For reproducibility, the full code is available on \href{https://github.com/Jacobkooi/Hadamax}{GitHub}.

DualDiff: Dual-branch Diffusion Model for Autonomous Driving with Semantic Fusion

Accurate and high-fidelity driving scene reconstruction relies on fully leveraging scene information as conditioning. However, existing approaches, which primarily use 3D bounding boxes and binary maps for foreground and background control, fall short in capturing the complexity of the scene and integrating multi-modal information. In this paper, we propose DualDiff, a dual-branch conditional diffusion model designed to enhance multi-view driving scene generation. We introduce Occupancy Ray Sampling (ORS), a semantic-rich 3D representation, alongside numerical driving scene representation, for comprehensive foreground and background control. To improve cross-modal information integration, we propose a Semantic Fusion Attention (SFA) mechanism that aligns and fuses features across modalities. Furthermore, we design a foreground-aware masked (FGM) loss to enhance the generation of tiny objects. DualDiff achieves state-of-the-art performance in FID score, as well as consistently better results in downstream BEV segmentation and 3D object detection tasks.

Exploiting Contextual Knowledge in LLMs through V-usable Information based Layer Enhancement

Large Language Models (LLMs) have demonstrated remarkable capabilities in various tasks, yet they often struggle with context-faithfulness generations that properly reflect contextual knowledge. While existing approaches focus on enhancing the decoding strategies, they ignore the fundamental mechanism of how contextual information is processed within LLMs' internal states. As a result, LLMs remain limited in their ability to fully leverage contextual knowledge. In this paper, we propose Context-aware Layer Enhancement (CaLE), a novel intervention method that enhances the utilization of contextual knowledge within LLMs' internal representations. By employing V-usable information analysis, CaLE strategically amplifies the growth of contextual information at an optimal layer, thereby enriching representations in the final layer. Our experiments demonstrate that CaLE effectively improves context-faithful generation in Question-Answering tasks, particularly in scenarios involving unknown or conflicting contextual knowledge.

DriVerse: Navigation World Model for Driving Simulation via Multimodal Trajectory Prompting and Motion Alignment

This paper presents DriVerse, a generative model for simulating navigation-driven driving scenes from a single image and a future trajectory. Previous autonomous driving world models either directly feed the trajectory or discrete control signals into the generation pipeline, leading to poor alignment between the control inputs and the implicit features of the 2D base generative model, which results in low-fidelity video outputs. Some methods use coarse textual commands or discrete vehicle control signals, which lack the precision to guide fine-grained, trajectory-specific video generation, making them unsuitable for evaluating actual autonomous driving algorithms. DriVerse introduces explicit trajectory guidance in two complementary forms: it tokenizes trajectories into textual prompts using a predefined trend vocabulary for seamless language integration, and converts 3D trajectories into 2D spatial motion priors to enhance control over static content within the driving scene. To better handle dynamic objects, we further introduce a lightweight motion alignment module, which focuses on the inter-frame consistency of dynamic pixels, significantly enhancing the temporal coherence of moving elements over long sequences. With minimal training and no need for additional data, DriVerse outperforms specialized models on future video generation tasks across both the nuScenes and Waymo datasets. The code and models will be released to the public.

Enhancing Human Motion Prediction via Multi-range Decoupling Decoding with Gating-adjusting Aggregation

Expressive representation of pose sequences is crucial for accurate motion modeling in human motion prediction (HMP). While recent deep learning-based methods have shown promise in learning motion representations, these methods tend to overlook the varying relevance and dependencies between historical information and future moments, with a stronger correlation for short-term predictions and weaker for distant future predictions. This limits the learning of motion representation and then hampers prediction performance. In this paper, we propose a novel approach called multi-range decoupling decoding with gating-adjusting aggregation ($MD2GA$), which leverages the temporal correlations to refine motion representation learning. This approach employs a two-stage strategy for HMP. In the first stage, a multi-range decoupling decoding adeptly adjusts feature learning by decoding the shared features into distinct future lengths, where different decoders offer diverse insights into motion patterns. In the second stage, a gating-adjusting aggregation dynamically combines the diverse insights guided by input motion data. Extensive experiments demonstrate that the proposed method can be easily integrated into other motion prediction methods and enhance their prediction performance.

Probabilistic Uncertain Reward Model: A Natural Generalization of Bradley-Terry Reward Model

Reinforcement Learning from Human Feedback (RLHF) has emerged as a critical technique for training large language models. However, reward hacking-a phenomenon where models exploit flaws in the reward model-remains a significant barrier to achieving robust and scalable intelligence through long-term training. Existing studies have proposed uncertain reward model to address reward hacking, however, they often lack systematic or theoretical foundations, failing to model the uncertainty intrinsically emerging from preference data. In this paper, we propose the Probabilistic Uncertain Reward Model (PURM), a natural generalization of the classical Bradley-Terry reward model. PURM learns reward distributions directly from preference data and quantifies per-sample uncertainty via the average overlap area between reward distributions. To mitigate reward hacking, we further introduce an uncertainty-aware penalty into Proximal Policy Optimization (PPO), which leverages the learned uncertainty to dynamically balance reward optimization and exploration. We propose a lightweight and easy-to-use implementation of PURM. Experiments demonstrate that PURM significantly delays the onset of reward hacking while improving final reward performance, outperforming baseline methods in both stability and effectiveness.