Abstract:Nuclei segmentation and classification provide an essential basis for tumor immune microenvironment analysis. The previous nuclei segmentation and classification models require splitting large images into smaller patches for training, leading to two significant issues. First, nuclei at the borders of adjacent patches often misalign during inference. Second, this patch-based approach significantly increases the model's training and inference time. Recently, Mamba has garnered attention for its ability to model large-scale images with linear time complexity and low memory consumption. It offers a promising solution for training nuclei segmentation and classification models on full-sized images. However, the Mamba orientation-based scanning method lacks account for category-specific features, resulting in sub-optimal performance in scenarios with imbalanced class distributions. To address these challenges, this paper introduces a novel scanning strategy based on category probability sorting, which independently ranks and scans features for each category according to confidence from high to low. This approach enhances the feature representation of uncertain samples and mitigates the issues caused by imbalanced distributions. Extensive experiments conducted on four public datasets demonstrate that our method outperforms state-of-the-art approaches, delivering superior performance in nuclei segmentation and classification tasks.
Abstract:Low-cost accelerometers play a crucial role in modern society due to their advantages of small size, ease of integration, wearability, and mass production, making them widely applicable in automotive systems, aerospace, and wearable technology. However, this widely used sensor suffers from severe accuracy and range limitations. To this end, we propose a honed-energy regularized and optimal supervised GAN (HEROS-GAN), which transforms low-cost sensor signals into high-cost equivalents, thereby overcoming the precision and range limitations of low-cost accelerometers. Due to the lack of frame-level paired low-cost and high-cost signals for training, we propose an Optimal Transport Supervision (OTS), which leverages optimal transport theory to explore potential consistency between unpaired data, thereby maximizing supervisory information. Moreover, we propose a Modulated Laplace Energy (MLE), which injects appropriate energy into the generator to encourage it to break range limitations, enhance local changes, and enrich signal details. Given the absence of a dedicated dataset, we specifically establish a Low-cost Accelerometer Signal Enhancement Dataset (LASED) containing tens of thousands of samples, which is the first dataset serving to improve the accuracy and range of accelerometers and is released in Github. Experimental results demonstrate that a GAN combined with either OTS or MLE alone can surpass the previous signal enhancement SOTA methods by an order of magnitude. Integrating both OTS and MLE, the HEROS-GAN achieves remarkable results, which doubles the accelerometer range while reducing signal noise by two orders of magnitude, establishing a benchmark in the accelerometer signal processing.
Abstract:Tissue semantic segmentation is one of the key tasks in computational pathology. To avoid the expensive and laborious acquisition of pixel-level annotations, a wide range of studies attempt to adopt the class activation map (CAM), a weakly-supervised learning scheme, to achieve pixel-level tissue segmentation. However, CAM-based methods are prone to suffer from under-activation and over-activation issues, leading to poor segmentation performance. To address this problem, we propose a novel weakly-supervised semantic segmentation framework for histopathological images based on image-mixing synthesis and consistency regularization, dubbed HisynSeg. Specifically, synthesized histopathological images with pixel-level masks are generated for fully-supervised model training, where two synthesis strategies are proposed based on Mosaic transformation and B\'ezier mask generation. Besides, an image filtering module is developed to guarantee the authenticity of the synthesized images. In order to further avoid the model overfitting to the occasional synthesis artifacts, we additionally propose a novel self-supervised consistency regularization, which enables the real images without segmentation masks to supervise the training of the segmentation model. By integrating the proposed techniques, the HisynSeg framework successfully transforms the weakly-supervised semantic segmentation problem into a fully-supervised one, greatly improving the segmentation accuracy. Experimental results on three datasets prove that the proposed method achieves a state-of-the-art performance. Code is available at https://github.com/Vison307/HisynSeg.
Abstract:Scientific innovation is pivotal for humanity, and harnessing large language models (LLMs) to generate research ideas could transform discovery. However, existing LLMs often produce simplistic and repetitive suggestions due to their limited ability in acquiring external knowledge for innovation. To address this problem, we introduce an enhanced planning and search methodology designed to boost the creative potential of LLM-based systems. Our approach involves an iterative process to purposely plan the retrieval of external knowledge, progressively enriching the idea generation with broader and deeper insights. Validation through automated and human assessments indicates that our framework substantially elevates the quality of generated ideas, particularly in novelty and diversity. The number of unique novel ideas produced by our framework is 3.4 times higher than without it. Moreover, our method outperforms the current state-of-the-art, generating at least 2.5 times more top-rated ideas based on 170 seed papers in a Swiss Tournament evaluation.
Abstract:As deep learning continues to evolve, the need for data efficiency becomes increasingly important. Considering labeling large datasets is both time-consuming and expensive, active learning (AL) provides a promising solution to this challenge by iteratively selecting the most informative subsets of examples to train deep neural networks, thereby reducing the labeling cost. However, the effectiveness of different AL algorithms can vary significantly across data scenarios, and determining which AL algorithm best fits a given task remains a challenging problem. This work presents the first differentiable AL strategy search method, named AutoAL, which is designed on top of existing AL sampling strategies. AutoAL consists of two neural nets, named SearchNet and FitNet, which are optimized concurrently under a differentiable bi-level optimization framework. For any given task, SearchNet and FitNet are iteratively co-optimized using the labeled data, learning how well a set of candidate AL algorithms perform on that task. With the optimal AL strategies identified, SearchNet selects a small subset from the unlabeled pool for querying their annotations, enabling efficient training of the task model. Experimental results demonstrate that AutoAL consistently achieves superior accuracy compared to all candidate AL algorithms and other selective AL approaches, showcasing its potential for adapting and integrating multiple existing AL methods across diverse tasks and domains. Code will be available at: https://github.com/haizailache999/AutoAL.
Abstract:Q-distribution prediction is a crucial research direction in controlled nuclear fusion, with deep learning emerging as a key approach to solving prediction challenges. In this paper, we leverage deep learning techniques to tackle the complexities of Q-distribution prediction. Specifically, we explore multimodal fusion methods in computer vision, integrating 2D line image data with the original 1D data to form a bimodal input. Additionally, we employ the Transformer's attention mechanism for feature extraction and the interactive fusion of bimodal information. Extensive experiments validate the effectiveness of our approach, significantly reducing prediction errors in Q-distribution.
Abstract:This study addresses the critical challenge of predicting the Q-distribution in long-term stable nuclear fusion task, a key component for advancing clean energy solutions. We introduce an innovative deep learning framework that employs Modern Hopfield Networks to incorporate associative memory from historical shots. Utilizing a newly compiled dataset, we demonstrate the effectiveness of our approach in enhancing Q-distribution prediction. The proposed method represents a significant advancement by leveraging historical memory information for the first time in this context, showcasing improved prediction accuracy and contributing to the optimization of nuclear fusion research.
Abstract:In the field of Alzheimer's disease diagnosis, segmentation and classification tasks are inherently interconnected. Sharing knowledge between models for these tasks can significantly improve training efficiency, particularly when training data is scarce. However, traditional knowledge distillation techniques often struggle to bridge the gap between segmentation and classification due to the distinct nature of tasks and different model architectures. To address this challenge, we propose a dual-stream pipeline that facilitates cross-task and cross-architecture knowledge sharing. Our approach introduces a dual-stream embedding module that unifies feature representations from segmentation and classification models, enabling dimensional integration of these features to guide the classification model. We validated our method on multiple 3D datasets for Alzheimer's disease diagnosis, demonstrating significant improvements in classification performance, especially on small datasets. Furthermore, we extended our pipeline with a residual temporal attention mechanism for early diagnosis, utilizing images taken before the atrophy of patients' brain mass. This advancement shows promise in enabling diagnosis approximately six months earlier in mild and asymptomatic stages, offering critical time for intervention.
Abstract:Explainable fake news detection predicts the authenticity of news items with annotated explanations. Today, Large Language Models (LLMs) are known for their powerful natural language understanding and explanation generation abilities. However, presenting LLMs for explainable fake news detection remains two main challenges. Firstly, fake news appears reasonable and could easily mislead LLMs, leaving them unable to understand the complex news-faking process. Secondly, utilizing LLMs for this task would generate both correct and incorrect explanations, which necessitates abundant labor in the loop. In this paper, we propose LLM-GAN, a novel framework that utilizes prompting mechanisms to enable an LLM to become Generator and Detector and for realistic fake news generation and detection. Our results demonstrate LLM-GAN's effectiveness in both prediction performance and explanation quality. We further showcase the integration of LLM-GAN to a cloud-native AI platform to provide better fake news detection service in the cloud.
Abstract:Survival prediction, utilizing pathological images and genomic profiles, is increasingly important in cancer analysis and prognosis. Despite significant progress, precise survival analysis still faces two main challenges: (1) The massive pixels contained in whole slide images (WSIs) complicate the process of pathological images, making it difficult to generate an effective representation of the tumor microenvironment (TME). (2) Existing multimodal methods often rely on alignment strategies to integrate complementary information, which may lead to information loss due to the inherent heterogeneity between pathology and genes. In this paper, we propose a Multimodal Cross-Task Interaction (MCTI) framework to explore the intrinsic correlations between subtype classification and survival analysis tasks. Specifically, to capture TME-related features in WSIs, we leverage the subtype classification task to mine tumor regions. Simultaneously, multi-head attention mechanisms are applied in genomic feature extraction, adaptively performing genes grouping to obtain task-related genomic embedding. With the joint representation of pathological images and genomic data, we further introduce a Transport-Guided Attention (TGA) module that uses optimal transport theory to model the correlation between subtype classification and survival analysis tasks, effectively transferring potential information. Extensive experiments demonstrate the superiority of our approaches, with MCTI outperforming state-of-the-art frameworks on three public benchmarks. \href{https://github.com/jsh0792/MCTI}{https://github.com/jsh0792/MCTI}.