Fast and scalable Wasserstein-1 neural optimal transport solver for single-cell perturbation prediction

Predicting single-cell perturbation responses requires mapping between two unpaired single-cell data distributions. Optimal transport (OT) theory provides a principled framework for constructing such mappings by minimizing transport cost. Recently, Wasserstein-2 ($W_2$) neural optimal transport solvers (\textit{e.g.}, CellOT) have been employed for this prediction task. However, $W_2$ OT relies on the general Kantorovich dual formulation, which involves optimizing over two conjugate functions, leading to a complex min-max optimization problem that converges slowly. To address these challenges, we propose a novel solver based on the Wasserstein-1 ($W_1$) dual formulation. Unlike $W_2$, the $W_1$ dual simplifies the optimization to a maximization problem over a single 1-Lipschitz function, thus eliminating the need for time-consuming min-max optimization. While solving the $W_1$ dual only reveals the transport direction and does not directly provide a unique optimal transport map, we incorporate an additional step using adversarial training to determine an appropriate transport step size, effectively recovering the transport map. Our experiments demonstrate that the proposed $W_1$ neural optimal transport solver can mimic the $W_2$ OT solvers in finding a unique and ``monotonic" map on 2D datasets. Moreover, the $W_1$ OT solver achieves performance on par with or surpasses $W_2$ OT solvers on real single-cell perturbation datasets. Furthermore, we show that $W_1$ OT solver achieves $25 \sim 45\times$ speedup, scales better on high dimensional transportation task, and can be directly applied on single-cell RNA-seq dataset with highly variable genes. Our implementation and experiments are open-sourced at \url{https://github.com/poseidonchan/w1ot}.

A Bayesian Approach to Harnessing the Power of LLMs in Authorship Attribution

Authorship attribution aims to identify the origin or author of a document. Traditional approaches have heavily relied on manual features and fail to capture long-range correlations, limiting their effectiveness. Recent advancements leverage text embeddings from pre-trained language models, which require significant fine-tuning on labeled data, posing challenges in data dependency and limited interpretability. Large Language Models (LLMs), with their deep reasoning capabilities and ability to maintain long-range textual associations, offer a promising alternative. This study explores the potential of pre-trained LLMs in one-shot authorship attribution, specifically utilizing Bayesian approaches and probability outputs of LLMs. Our methodology calculates the probability that a text entails previous writings of an author, reflecting a more nuanced understanding of authorship. By utilizing only pre-trained models such as Llama-3-70B, our results on the IMDb and blog datasets show an impressive 85\% accuracy in one-shot authorship classification across ten authors. Our findings set new baselines for one-shot authorship analysis using LLMs and expand the application scope of these models in forensic linguistics. This work also includes extensive ablation studies to validate our approach.

Inevitable Trade-off between Watermark Strength and Speculative Sampling Efficiency for Language Models

Large language models are probabilistic models, and the process of generating content is essentially sampling from the output distribution of the language model. Existing watermarking techniques inject watermarks into the generated content without altering the output quality. On the other hand, existing acceleration techniques, specifically speculative sampling, leverage a draft model to speed up the sampling process while preserving the output distribution. However, there is no known method to simultaneously accelerate the sampling process and inject watermarks into the generated content. In this paper, we investigate this direction and find that the integration of watermarking and acceleration is non-trivial. We prove a no-go theorem, which states that it is impossible to simultaneously maintain the highest watermark strength and the highest sampling efficiency. Furthermore, we propose two methods that maintain either the sampling efficiency or the watermark strength, but not both. Our work provides a rigorous theoretical foundation for understanding the inherent trade-off between watermark strength and sampling efficiency in accelerating the generation of watermarked tokens for large language models. We also conduct numerical experiments to validate our theoretical findings and demonstrate the effectiveness of the proposed methods.

A Survey of Small Language Models

Small Language Models (SLMs) have become increasingly important due to their efficiency and performance to perform various language tasks with minimal computational resources, making them ideal for various settings including on-device, mobile, edge devices, among many others. In this article, we present a comprehensive survey on SLMs, focusing on their architectures, training techniques, and model compression techniques. We propose a novel taxonomy for categorizing the methods used to optimize SLMs, including model compression, pruning, and quantization techniques. We summarize the benchmark datasets that are useful for benchmarking SLMs along with the evaluation metrics commonly used. Additionally, we highlight key open challenges that remain to be addressed. Our survey aims to serve as a valuable resource for researchers and practitioners interested in developing and deploying small yet efficient language models.

Distortion-free Watermarks are not Truly Distortion-free under Watermark Key Collisions

Language model (LM) watermarking techniques inject a statistical signal into LM-generated content by substituting the random sampling process with pseudo-random sampling, using watermark keys as the random seed. Among these statistical watermarking approaches, distortion-free watermarks are particularly crucial because they embed watermarks into LM-generated content without compromising generation quality. However, one notable limitation of pseudo-random sampling compared to true-random sampling is that, under the same watermark keys (i.e., key collision), the results of pseudo-random sampling exhibit correlations. This limitation could potentially undermine the distortion-free property. Our studies reveal that key collisions are inevitable due to the limited availability of watermark keys, and existing distortion-free watermarks exhibit a significant distribution bias toward the original LM distribution in the presence of key collisions. Moreover, achieving a perfect distortion-free watermark is impossible as no statistical signal can be embedded under key collisions. To reduce the distribution bias caused by key collisions, we introduce a new family of distortion-free watermarks--beta-watermark. Experimental results support that the beta-watermark can effectively reduce the distribution bias under key collisions.

Token-Level Adversarial Prompt Detection Based on Perplexity Measures and Contextual Information

In recent years, Large Language Models (LLM) have emerged as pivotal tools in various applications. However, these models are susceptible to adversarial prompt attacks, where attackers can carefully curate input strings that lead to undesirable outputs. The inherent vulnerability of LLMs stems from their input-output mechanisms, especially when presented with intensely out-of-distribution (OOD) inputs. This paper proposes a token-level detection method to identify adversarial prompts, leveraging the LLM's capability to predict the next token's probability. We measure the degree of the model's perplexity and incorporate neighboring token information to encourage the detection of contiguous adversarial prompt sequences. As a result, we propose two methods: one that identifies each token as either being part of an adversarial prompt or not, and another that estimates the probability of each token being part of an adversarial prompt.

GPT-4 Vision on Medical Image Classification -- A Case Study on COVID-19 Dataset

This technical report delves into the application of GPT-4 Vision (GPT-4V) in the nuanced realm of COVID-19 image classification, leveraging the transformative potential of in-context learning to enhance diagnostic processes.

DiPmark: A Stealthy, Efficient and Resilient Watermark for Large Language Models

Watermarking techniques offer a promising way to secure data via embedding covert information into the data. A paramount challenge in the domain lies in preserving the distribution of original data during watermarking. Our research extends and refines existing watermarking framework, placing emphasis on the importance of a distribution-preserving (DiP) watermark. Contrary to the current strategies, our proposed DiPmark preserves the original token distribution during watermarking (stealthy), is detectable without access to the language model API or weights (efficient), and is robust to moderate changes of tokens (resilient). This is achieved by incorporating a novel reweight strategy, combined with a hash function that assigns unique \textit{i.i.d.} ciphers based on the context. The empirical benchmarks of our approach underscore its stealthiness, efficiency, and resilience, making it a robust solution for watermarking tasks that demand impeccable quality preservation.

Solving a Class of Non-Convex Minimax Optimization in Federated Learning

The minimax problems arise throughout machine learning applications, ranging from adversarial training and policy evaluation in reinforcement learning to AUROC maximization. To address the large-scale data challenges across multiple clients with communication-efficient distributed training, federated learning (FL) is gaining popularity. Many optimization algorithms for minimax problems have been developed in the centralized setting (\emph{i.e.} single-machine). Nonetheless, the algorithm for minimax problems under FL is still underexplored. In this paper, we study a class of federated nonconvex minimax optimization problems. We propose FL algorithms (FedSGDA+ and FedSGDA-M) and reduce existing complexity results for the most common minimax problems. For nonconvex-concave problems, we propose FedSGDA+ and reduce the communication complexity to $O(\varepsilon^{-6})$. Under nonconvex-strongly-concave and nonconvex-PL minimax settings, we prove that FedSGDA-M has the best-known sample complexity of $O(\kappa^{3} N^{-1}\varepsilon^{-3})$ and the best-known communication complexity of $O(\kappa^{2}\varepsilon^{-2})$. FedSGDA-M is the first algorithm to match the best sample complexity $O(\varepsilon^{-3})$ achieved by the single-machine method under the nonconvex-strongly-concave setting. Extensive experimental results on fair classification and AUROC maximization show the efficiency of our algorithms.

Federated Conditional Stochastic Optimization

Conditional stochastic optimization has found applications in a wide range of machine learning tasks, such as invariant learning, AUPRC maximization, and meta-learning. As the demand for training models with large-scale distributed data grows in these applications, there is an increasing need for communication-efficient distributed optimization algorithms, such as federated learning algorithms. This paper considers the nonconvex conditional stochastic optimization in federated learning and proposes the first federated conditional stochastic optimization algorithm (FCSG) with a conditional stochastic gradient estimator and a momentum-based algorithm (FCSG-M). To match the lower bound complexity in the single-machine setting, we design an accelerated algorithm (Acc-FCSG-M) via the variance reduction to achieve the best sample and communication complexity. Compared with the existing optimization analysis for MAML in FL, federated conditional stochastic optimization considers the sample of tasks. Extensive experimental results on various tasks validate the efficiency of these algorithms.