DARWIN 1.5: Large Language Models as Materials Science Adapted Learners

Materials discovery and design aim to find components and structures with desirable properties over highly complex and diverse search spaces. Traditional solutions, such as high-throughput simulations and machine learning (ML), often rely on complex descriptors, which hinder generalizability and transferability across tasks. Moreover, these descriptors may deviate from experimental data due to inevitable defects and purity issues in the real world, which may reduce their effectiveness in practical applications. To address these challenges, we propose Darwin 1.5, an open-source large language model (LLM) tailored for materials science. By leveraging natural language as input, Darwin eliminates the need for task-specific descriptors and enables a flexible, unified approach to material property prediction and discovery. We employ a two-stage training strategy combining question-answering (QA) fine-tuning with multi-task learning (MTL) to inject domain-specific knowledge in various modalities and facilitate cross-task knowledge transfer. Through our strategic approach, we achieved a significant enhancement in the prediction accuracy of LLMs, with a maximum improvement of 60\% compared to LLaMA-7B base models. It further outperforms traditional machine learning models on various tasks in material science, showcasing the potential of LLMs to provide a more versatile and scalable foundation model for materials discovery and design.

Does Few-Shot Learning Help LLM Performance in Code Synthesis?

Large language models (LLMs) have made significant strides at code generation through improved model design, training, and chain-of-thought. However, prompt-level optimizations remain an important yet under-explored aspect of LLMs for coding. This work focuses on the few-shot examples present in most code generation prompts, offering a systematic study on whether few-shot examples improve LLM's coding capabilities, which few-shot examples have the largest impact, and how to select impactful examples. Our work offers 2 approaches for selecting few-shot examples, a model-free method, CODEEXEMPLAR-FREE, and a model-based method, CODEEXEMPLAR-BASED. The 2 methods offer a trade-off between improved performance and reliance on training data and interpretability. Both methods significantly improve CodeLlama's coding ability across the popular HumanEval+ coding benchmark. In summary, our work provides valuable insights into how to pick few-shot examples in code generation prompts to improve LLM code generation capabilities.

ByteScience: Bridging Unstructured Scientific Literature and Structured Data with Auto Fine-tuned Large Language Model in Token Granularity

Natural Language Processing (NLP) is widely used to supply summarization ability from long context to structured information. However, extracting structured knowledge from scientific text by NLP models remains a challenge because of its domain-specific nature to complex data preprocessing and the granularity of multi-layered device-level information. To address this, we introduce ByteScience, a non-profit cloud-based auto fine-tuned Large Language Model (LLM) platform, which is designed to extract structured scientific data and synthesize new scientific knowledge from vast scientific corpora. The platform capitalizes on DARWIN, an open-source, fine-tuned LLM dedicated to natural science. The platform was built on Amazon Web Services (AWS) and provides an automated, user-friendly workflow for custom model development and data extraction. The platform achieves remarkable accuracy with only a small amount of well-annotated articles. This innovative tool streamlines the transition from the science literature to structured knowledge and data and benefits the advancements in natural informatics.

From Tokens to Materials: Leveraging Language Models for Scientific Discovery

Exploring the predictive capabilities of language models in material science is an ongoing interest. This study investigates the application of language model embeddings to enhance material property prediction in materials science. By evaluating various contextual embedding methods and pre-trained models, including Bidirectional Encoder Representations from Transformers (BERT) and Generative Pre-trained Transformers (GPT), we demonstrate that domain-specific models, particularly MatBERT significantly outperform general-purpose models in extracting implicit knowledge from compound names and material properties. Our findings reveal that information-dense embeddings from the third layer of MatBERT, combined with a context-averaging approach, offer the most effective method for capturing material-property relationships from the scientific literature. We also identify a crucial "tokenizer effect," highlighting the importance of specialized text processing techniques that preserve complete compound names while maintaining consistent token counts. These insights underscore the value of domain-specific training and tokenization in materials science applications and offer a promising pathway for accelerating the discovery and development of new materials through AI-driven approaches.

MOOSE-Chem: Large Language Models for Rediscovering Unseen Chemistry Scientific Hypotheses

Scientific discovery contributes largely to human society's prosperity, and recent progress shows that LLMs could potentially catalyze this process. However, it is still unclear whether LLMs can discover novel and valid hypotheses in chemistry. In this work, we investigate this central research question: Can LLMs automatically discover novel and valid chemistry research hypotheses given only a chemistry research background (consisting of a research question and/or a background survey), without limitation on the domain of the research question? After extensive discussions with chemistry experts, we propose an assumption that a majority of chemistry hypotheses can be resulted from a research background and several inspirations. With this key insight, we break the central question into three smaller fundamental questions. In brief, they are: (1) given a background question, whether LLMs can retrieve good inspirations; (2) with background and inspirations, whether LLMs can lead to hypothesis; and (3) whether LLMs can identify good hypotheses to rank them higher. To investigate these questions, we construct a benchmark consisting of 51 chemistry papers published in Nature, Science, or a similar level in 2024 (all papers are only available online since 2024). Every paper is divided by chemistry PhD students into three components: background, inspirations, and hypothesis. The goal is to rediscover the hypothesis, given only the background and a large randomly selected chemistry literature corpus consisting the ground truth inspiration papers, with LLMs trained with data up to 2023. We also develop an LLM-based multi-agent framework that leverages the assumption, consisting of three stages reflecting the three smaller questions. The proposed method can rediscover many hypotheses with very high similarity with the ground truth ones, covering the main innovations.

LLaMA-Berry: Pairwise Optimization for O1-like Olympiad-Level Mathematical Reasoning

This paper presents an advanced mathematical problem-solving framework, LLaMA-Berry, for enhancing the mathematical reasoning ability of Large Language Models (LLMs). The framework combines Monte Carlo Tree Search (MCTS) with iterative Self-Refine to optimize the reasoning path and utilizes a pairwise reward model to evaluate different paths globally. By leveraging the self-critic and rewriting capabilities of LLMs, Self-Refine applied to MCTS (SR-MCTS) overcomes the inefficiencies and limitations of conventional step-wise and greedy search algorithms by fostering a more efficient exploration of solution spaces. Pairwise Preference Reward Model~(PPRM), inspired by Reinforcement Learning from Human Feedback (RLHF), is then used to model pairwise preferences between solutions, utilizing an Enhanced Borda Count (EBC) method to synthesize these preferences into a global ranking score to find better answers. This approach addresses the challenges of scoring variability and non-independent distributions in mathematical reasoning tasks. The framework has been tested on general and advanced benchmarks, showing superior performance in terms of search efficiency and problem-solving capability compared to existing methods like ToT and rStar, particularly in complex Olympiad-level benchmarks, including GPQA, AIME24 and AMC23.

SciQAG: A Framework for Auto-Generated Scientific Question Answering Dataset with Fine-grained Evaluation

The use of question-answer (QA) pairs for training and evaluating large language models (LLMs) has attracted considerable attention. Yet few available QA datasets are based on knowledge from the scientific literature. Here we bridge this gap by presenting Automatic Generation of Scientific Question Answers (SciQAG), a framework for automatic generation and evaluation of scientific QA pairs sourced from published scientific literature. We fine-tune an open-source LLM to generate \num{960000} scientific QA pairs from full-text scientific papers and propose a five-dimensional metric to evaluate the quality of the generated QA pairs. We show via LLM-based evaluation that the generated QA pairs consistently achieve an average score of 2.5 out of 3 across five dimensions, indicating that our framework can distill key knowledge from papers into high-quality QA pairs at scale. We make the dataset, models, and evaluation codes publicly available.

Construction of Functional Materials Knowledge Graph in Multidisciplinary Materials Science via Large Language Model

The convergence of materials science and artificial intelligence has unlocked new opportunities for gathering, analyzing, and generating novel materials sourced from extensive scientific literature. Despite the potential benefits, persistent challenges such as manual annotation, precise extraction, and traceability issues remain. Large language models have emerged as promising solutions to address these obstacles. This paper introduces Functional Materials Knowledge Graph (FMKG), a multidisciplinary materials science knowledge graph. Through the utilization of advanced natural language processing techniques, extracting millions of entities to form triples from a corpus comprising all high-quality research papers published in the last decade. It organizes unstructured information into nine distinct labels, covering Name, Formula, Acronym, Structure/Phase, Properties, Descriptor, Synthesis, Characterization Method, Application, and Domain, seamlessly integrating papers' Digital Object Identifiers. As the latest structured database for functional materials, FMKG acts as a powerful catalyst for expediting the development of functional materials and a fundation for building a more comprehensive material knowledge graph using full paper text. Furthermore, our research lays the groundwork for practical text-mining-based knowledge management systems, not only in intricate materials systems but also applicable to other specialized domains.

Data Attribution for Diffusion Models: Timestep-induced Bias in Influence Estimation

Data attribution methods trace model behavior back to its training dataset, offering an effective approach to better understand ''black-box'' neural networks. While prior research has established quantifiable links between model output and training data in diverse settings, interpreting diffusion model outputs in relation to training samples remains underexplored. In particular, diffusion models operate over a sequence of timesteps instead of instantaneous input-output relationships in previous contexts, posing a significant challenge to extend existing frameworks to diffusion models directly. Notably, we present Diffusion-TracIn that incorporates this temporal dynamics and observe that samples' loss gradient norms are highly dependent on timestep. This trend leads to a prominent bias in influence estimation, and is particularly noticeable for samples trained on large-norm-inducing timesteps, causing them to be generally influential. To mitigate this effect, we introduce Diffusion-ReTrac as a re-normalized adaptation that enables the retrieval of training samples more targeted to the test sample of interest, facilitating a localized measurement of influence and considerably more intuitive visualization. We demonstrate the efficacy of our approach through various evaluation metrics and auxiliary tasks, reducing the amount of generally influential samples to $\frac{1}{3}$ of its original quantity.

DARWIN Series: Domain Specific Large Language Models for Natural Science

Emerging tools bring forth fresh approaches to work, and the field of natural science is no different. In natural science, traditional manual, serial, and labour-intensive work is being augmented by automated, parallel, and iterative processes driven by artificial intelligence-based experimental automation and more. To add new capabilities in natural science, enabling the acceleration and enrichment of automation of the discovery process, we present DARWIN, a series of tailored LLMs for natural science, mainly in physics, chemistry, and material science. This series relies on open-source LLM, incorporating structured and unstructured scientific knowledge from public datasets and literature. We fine-tuned the models using over 60,000 instruction data points, emphasizing factual correctness. During the fine-tuning, we introduce the Scientific Instruction Generation (SIG) model, automating instruction generation from scientific texts. This eliminates the need for manual extraction or domain-specific knowledge graphs and efficiently injects scientific knowledge into the model. We also explore multi-task training strategies, revealing interconnections between scientific tasks. DARWIN series not only achieves state-of-the-art results on various scientific tasks but also diminishes reliance on closed-source AI models. Our research showcases the ability of LLM in the scientific domain, with the overarching goal of fostering prosperity within the broader AI for science community.