Multi-Task Adversarial Variational Autoencoder for Estimating Biological Brain Age with Multimodal Neuroimaging

Despite advances in deep learning for estimating brain age from structural MRI data, incorporating functional MRI data is challenging due to its complex structure and the noisy nature of functional connectivity measurements. To address this, we present the Multitask Adversarial Variational Autoencoder, a custom deep learning framework designed to improve brain age predictions through multimodal MRI data integration. This model separates latent variables into generic and unique codes, isolating shared and modality-specific features. By integrating multitask learning with sex classification as an additional task, the model captures sex-specific aging patterns. Evaluated on the OpenBHB dataset, a large multisite brain MRI collection, the model achieves a mean absolute error of 2.77 years, outperforming traditional methods. This success positions M-AVAE as a powerful tool for metaverse-based healthcare applications in brain age estimation.

SMILE-UHURA Challenge -- Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiograms

The human brain receives nutrients and oxygen through an intricate network of blood vessels. Pathology affecting small vessels, at the mesoscopic scale, represents a critical vulnerability within the cerebral blood supply and can lead to severe conditions, such as Cerebral Small Vessel Diseases. The advent of 7 Tesla MRI systems has enabled the acquisition of higher spatial resolution images, making it possible to visualise such vessels in the brain. However, the lack of publicly available annotated datasets has impeded the development of robust, machine learning-driven segmentation algorithms. To address this, the SMILE-UHURA challenge was organised. This challenge, held in conjunction with the ISBI 2023, in Cartagena de Indias, Colombia, aimed to provide a platform for researchers working on related topics. The SMILE-UHURA challenge addresses the gap in publicly available annotated datasets by providing an annotated dataset of Time-of-Flight angiography acquired with 7T MRI. This dataset was created through a combination of automated pre-segmentation and extensive manual refinement. In this manuscript, sixteen submitted methods and two baseline methods are compared both quantitatively and qualitatively on two different datasets: held-out test MRAs from the same dataset as the training data (with labels kept secret) and a separate 7T ToF MRA dataset where both input volumes and labels are kept secret. The results demonstrate that most of the submitted deep learning methods, trained on the provided training dataset, achieved reliable segmentation performance. Dice scores reached up to 0.838 $\pm$ 0.066 and 0.716 $\pm$ 0.125 on the respective datasets, with an average performance of up to 0.804 $\pm$ 0.15.

SimpsonsVQA: Enhancing Inquiry-Based Learning with a Tailored Dataset

Visual Question Answering (VQA) has emerged as a promising area of research to develop AI-based systems for enabling interactive and immersive learning. Numerous VQA datasets have been introduced to facilitate various tasks, such as answering questions or identifying unanswerable ones. However, most of these datasets are constructed using real-world images, leaving the performance of existing models on cartoon images largely unexplored. Hence, in this paper, we present "SimpsonsVQA", a novel dataset for VQA derived from The Simpsons TV show, designed to promote inquiry-based learning. Our dataset is specifically designed to address not only the traditional VQA task but also to identify irrelevant questions related to images, as well as the reverse scenario where a user provides an answer to a question that the system must evaluate (e.g., as correct, incorrect, or ambiguous). It aims to cater to various visual applications, harnessing the visual content of "The Simpsons" to create engaging and informative interactive systems. SimpsonsVQA contains approximately 23K images, 166K QA pairs, and 500K judgments (https://simpsonsvqa.org). Our experiments show that current large vision-language models like ChatGPT4o underperform in zero-shot settings across all three tasks, highlighting the dataset's value for improving model performance on cartoon images. We anticipate that SimpsonsVQA will inspire further research, innovation, and advancements in inquiry-based learning VQA.

Better to Ask in English: Evaluation of Large Language Models on English, Low-resource and Cross-Lingual Settings

Large Language Models (LLMs) are trained on massive amounts of data, enabling their application across diverse domains and tasks. Despite their remarkable performance, most LLMs are developed and evaluated primarily in English. Recently, a few multi-lingual LLMs have emerged, but their performance in low-resource languages, especially the most spoken languages in South Asia, is less explored. To address this gap, in this study, we evaluate LLMs such as GPT-4, Llama 2, and Gemini to analyze their effectiveness in English compared to other low-resource languages from South Asia (e.g., Bangla, Hindi, and Urdu). Specifically, we utilized zero-shot prompting and five different prompt settings to extensively investigate the effectiveness of the LLMs in cross-lingual translated prompts. The findings of the study suggest that GPT-4 outperformed Llama 2 and Gemini in all five prompt settings and across all languages. Moreover, all three LLMs performed better for English language prompts than other low-resource language prompts. This study extensively investigates LLMs in low-resource language contexts to highlight the improvements required in LLMs and language-specific resources to develop more generally purposed NLP applications.

Latent fingerprint enhancement for accurate minutiae detection

Identification of suspects based on partial and smudged fingerprints, commonly referred to as fingermarks or latent fingerprints, presents a significant challenge in the field of fingerprint recognition. Although fixed-length embeddings have shown effectiveness in recognising rolled and slap fingerprints, the methods for matching latent fingerprints have primarily centred around local minutiae-based embeddings, failing to fully exploit global representations for matching purposes. Consequently, enhancing latent fingerprints becomes critical to ensuring robust identification for forensic investigations. Current approaches often prioritise restoring ridge patterns, overlooking the fine-macroeconomic details crucial for accurate fingerprint recognition. To address this, we propose a novel approach that uses generative adversary networks (GANs) to redefine Latent Fingerprint Enhancement (LFE) through a structured approach to fingerprint generation. By directly optimising the minutiae information during the generation process, the model produces enhanced latent fingerprints that exhibit exceptional fidelity to ground-truth instances. This leads to a significant improvement in identification performance. Our framework integrates minutiae locations and orientation fields, ensuring the preservation of both local and structural fingerprint features. Extensive evaluations conducted on two publicly available datasets demonstrate our method's dominance over existing state-of-the-art techniques, highlighting its potential to significantly enhance latent fingerprint recognition accuracy in forensic applications.

LSSF-Net: Lightweight Segmentation with Self-Awareness, Spatial Attention, and Focal Modulation

Accurate segmentation of skin lesions within dermoscopic images plays a crucial role in the timely identification of skin cancer for computer-aided diagnosis on mobile platforms. However, varying shapes of the lesions, lack of defined edges, and the presence of obstructions such as hair strands and marker colors make this challenge more complex. \textcolor{red}Additionally, skin lesions often exhibit subtle variations in texture and color that are difficult to differentiate from surrounding healthy skin, necessitating models that can capture both fine-grained details and broader contextual information. Currently, melanoma segmentation models are commonly based on fully connected networks and U-Nets. However, these models often struggle with capturing the complex and varied characteristics of skin lesions, such as the presence of indistinct boundaries and diverse lesion appearances, which can lead to suboptimal segmentation performance.To address these challenges, we propose a novel lightweight network specifically designed for skin lesion segmentation utilizing mobile devices, featuring a minimal number of learnable parameters (only 0.8 million). This network comprises an encoder-decoder architecture that incorporates conformer-based focal modulation attention, self-aware local and global spatial attention, and split channel-shuffle. The efficacy of our model has been evaluated on four well-established benchmark datasets for skin lesion segmentation: ISIC 2016, ISIC 2017, ISIC 2018, and PH2. Empirical findings substantiate its state-of-the-art performance, notably reflected in a high Jaccard index.

PitVis-2023 Challenge: Workflow Recognition in videos of Endoscopic Pituitary Surgery

The field of computer vision applied to videos of minimally invasive surgery is ever-growing. Workflow recognition pertains to the automated recognition of various aspects of a surgery: including which surgical steps are performed; and which surgical instruments are used. This information can later be used to assist clinicians when learning the surgery; during live surgery; and when writing operation notes. The Pituitary Vision (PitVis) 2023 Challenge tasks the community to step and instrument recognition in videos of endoscopic pituitary surgery. This is a unique task when compared to other minimally invasive surgeries due to the smaller working space, which limits and distorts vision; and higher frequency of instrument and step switching, which requires more precise model predictions. Participants were provided with 25-videos, with results presented at the MICCAI-2023 conference as part of the Endoscopic Vision 2023 Challenge in Vancouver, Canada, on 08-Oct-2023. There were 18-submissions from 9-teams across 6-countries, using a variety of deep learning models. A commonality between the top performing models was incorporating spatio-temporal and multi-task methods, with greater than 50% and 10% macro-F1-score improvement over purely spacial single-task models in step and instrument recognition respectively. The PitVis-2023 Challenge therefore demonstrates state-of-the-art computer vision models in minimally invasive surgery are transferable to a new dataset, with surgery specific techniques used to enhance performance, progressing the field further. Benchmark results are provided in the paper, and the dataset is publicly available at: https://doi.org/10.5522/04/26531686.

EUIS-Net: A Convolutional Neural Network for Efficient Ultrasound Image Segmentation

Segmenting ultrasound images is critical for various medical applications, but it offers significant challenges due to ultrasound images' inherent noise and unpredictability. To address these challenges, we proposed EUIS-Net, a CNN network designed to segment ultrasound images efficiently and precisely. The proposed EUIS-Net utilises four encoder-decoder blocks, resulting in a notable decrease in computational complexity while achieving excellent performance. The proposed EUIS-Net integrates both channel and spatial attention mechanisms into the bottleneck to improve feature representation and collect significant contextual information. In addition, EUIS-Net incorporates a region-aware attention module in skip connections, which enhances the ability to concentrate on the region of the injury. To enable thorough information exchange across various network blocks, skip connection aggregation is employed from the network's lowermost to the uppermost block. Comprehensive evaluations are conducted on two publicly available ultrasound image segmentation datasets. The proposed EUIS-Net achieved mean IoU and dice scores of 78. 12\%, 85. 42\% and 84. 73\%, 89. 01\% in the BUSI and DDTI datasets, respectively. The findings of our study showcase the substantial capabilities of EUIS-Net for immediate use in clinical settings and its versatility in various ultrasound imaging tasks.

TESL-Net: A Transformer-Enhanced CNN for Accurate Skin Lesion Segmentation

Early detection of skin cancer relies on precise segmentation of dermoscopic images of skin lesions. However, this task is challenging due to the irregular shape of the lesion, the lack of sharp borders, and the presence of artefacts such as marker colours and hair follicles. Recent methods for melanoma segmentation are U-Nets and fully connected networks (FCNs). As the depth of these neural network models increases, they can face issues like the vanishing gradient problem and parameter redundancy, potentially leading to a decrease in the Jaccard index of the segmentation model. In this study, we introduced a novel network named TESL-Net for the segmentation of skin lesions. The proposed TESL-Net involves a hybrid network that combines the local features of a CNN encoder-decoder architecture with long-range and temporal dependencies using bi-convolutional long-short-term memory (Bi-ConvLSTM) networks and a Swin transformer. This enables the model to account for the uncertainty of segmentation over time and capture contextual channel relationships in the data. We evaluated the efficacy of TESL-Net in three commonly used datasets (ISIC 2016, ISIC 2017, and ISIC 2018) for the segmentation of skin lesions. The proposed TESL-Net achieves state-of-the-art performance, as evidenced by a significantly elevated Jaccard index demonstrated by empirical results.

A Robust Algorithm for Contactless Fingerprint Enhancement and Matching

Compared to contact fingerprint images, contactless fingerprint images exhibit four distinct characteristics: (1) they contain less noise; (2) they have fewer discontinuities in ridge patterns; (3) the ridge-valley pattern is less distinct; and (4) they pose an interoperability problem, as they lack the elastic deformation caused by pressing the finger against the capture device. These properties present significant challenges for the enhancement of contactless fingerprint images. In this study, we propose a novel contactless fingerprint identification solution that enhances the accuracy of minutiae detection through improved frequency estimation and a new region-quality-based minutia extraction algorithm. In addition, we introduce an efficient and highly accurate minutiae-based encoding and matching algorithm. We validate the effectiveness of our approach through extensive experimental testing. Our method achieves a minimum Equal Error Rate (EER) of 2.84\% on the PolyU contactless fingerprint dataset, demonstrating its superior performance compared to existing state-of-the-art techniques. The proposed fingerprint identification method exhibits notable precision and resilience, proving to be an effective and feasible solution for contactless fingerprint-based identification systems.