LLM-RG4: Flexible and Factual Radiology Report Generation across Diverse Input Contexts

Drafting radiology reports is a complex task requiring flexibility, where radiologists tail content to available information and particular clinical demands. However, most current radiology report generation (RRG) models are constrained to a fixed task paradigm, such as predicting the full ``finding'' section from a single image, inherently involving a mismatch between inputs and outputs. The trained models lack the flexibility for diverse inputs and could generate harmful, input-agnostic hallucinations. To bridge the gap between current RRG models and the clinical demands in practice, we first develop a data generation pipeline to create a new MIMIC-RG4 dataset, which considers four common radiology report drafting scenarios and has perfectly corresponded input and output. Secondly, we propose a novel large language model (LLM) based RRG framework, namely LLM-RG4, which utilizes LLM's flexible instruction-following capabilities and extensive general knowledge. We further develop an adaptive token fusion module that offers flexibility to handle diverse scenarios with different input combinations, while minimizing the additional computational burden associated with increased input volumes. Besides, we propose a token-level loss weighting strategy to direct the model's attention towards positive and uncertain descriptions. Experimental results demonstrate that LLM-RG4 achieves state-of-the-art performance in both clinical efficiency and natural language generation on the MIMIC-RG4 and MIMIC-CXR datasets. We quantitatively demonstrate that our model has minimal input-agnostic hallucinations, whereas current open-source models commonly suffer from this problem.

Anno-incomplete Multi-dataset Detection

Object detectors have shown outstanding performance on various public datasets. However, annotating a new dataset for a new task is usually unavoidable in real, since 1) a single existing dataset usually does not contain all object categories needed; 2) using multiple datasets usually suffers from annotation incompletion and heterogeneous features. We propose a novel problem as "Annotation-incomplete Multi-dataset Detection", and develop an end-to-end multi-task learning architecture which can accurately detect all the object categories with multiple partially annotated datasets. Specifically, we propose an attention feature extractor which helps to mine the relations among different datasets. Besides, a knowledge amalgamation training strategy is incorporated to accommodate heterogeneous features from different sources. Extensive experiments on different object detection datasets demonstrate the effectiveness of our methods and an improvement of 2.17%, 2.10% in mAP can be achieved on COCO and VOC respectively.

Rib Suppression in Digital Chest Tomosynthesis

Digital chest tomosynthesis (DCT) is a technique to produce sectional 3D images of a human chest for pulmonary disease screening, with 2D X-ray projections taken within an extremely limited range of angles. However, under the limited angle scenario, DCT contains strong artifacts caused by the presence of ribs, jamming the imaging quality of the lung area. Recently, great progress has been achieved for rib suppression in a single X-ray image, to reveal a clearer lung texture. We firstly extend the rib suppression problem to the 3D case at the software level. We propose a $\textbf{T}$omosynthesis $\textbf{RI}$b Su$\textbf{P}$pression and $\textbf{L}$ung $\textbf{E}$nhancement $\textbf{Net}$work (TRIPLE-Net) to model the 3D rib component and provide a rib-free DCT. TRIPLE-Net takes the advantages from both 2D and 3D domains, which model the ribs in DCT with the exact FBP procedure and 3D depth information, respectively. The experiments on simulated datasets and clinical data have shown the effectiveness of TRIPLE-Net to preserve lung details as well as improve the imaging quality of pulmonary diseases. Finally, an expert user study confirms our findings.

A semi-automatic ultrasound image analysis system for the grading diagnosis of COVID-19 pneumonia

This paper proposes a semi-automatic system based on quantitative characterization of the specific image patterns in lung ultrasound (LUS) images, in order to assess the lung conditions of patients with COVID-19 pneumonia, as well as to differentiate between the severe / and no-severe cases. Specifically, four parameters are extracted from each LUS image, namely the thickness (TPL) and roughness (RPL) of the pleural line, and the accumulated with (AWBL) and acoustic coefficient (ACBL) of B lines. 27 patients are enrolled in this study, which are grouped into 13 moderate patients, 7 severe patients and 7 critical patients. Furthermore, the severe and critical patients are regarded as the severe cases, and the moderate patients are regarded as the non-severe cases. Biomarkers among different groups are compared. Each single biomarker and a classifier with all the biomarkers as input are utilized for the binary diagnosis of severe case and non-severe case, respectively. The classifier achieves the best classification performance among all the compared methods (area under the receiver operating characteristics curve = 0.93, sensitivity = 0.93, specificity = 0.85). The proposed image analysis system could be potentially applied to the grading and prognosis evaluation of patients with COVID-19 pneumonia.

Cascaded Feature Warping Network for Unsupervised Medical Image Registration

Deformable image registration is widely utilized in medical image analysis, but most proposed methods fail in the situation of complex deformations. In this paper, we pre-sent a cascaded feature warping network to perform the coarse-to-fine registration. To achieve this, a shared-weights encoder network is adopted to generate the feature pyramids for the unaligned images. The feature warping registration module is then used to estimate the deformation field at each level. The coarse-to-fine manner is implemented by cascading the module from the bottom level to the top level. Furthermore, the multi-scale loss is also introduced to boost the registration performance. We employ two public benchmark datasets and conduct various experiments to evaluate our method. The results show that our method outperforms the state-of-the-art methods, which also demonstrates that the cascaded feature warping network can perform the coarse-to-fine registration effectively and efficiently.

Multi-Modality Generative Adversarial Networks with Tumor Consistency Loss for Brain MR Image Synthesis

Magnetic Resonance (MR) images of different modalities can provide complementary information for clinical diagnosis, but whole modalities are often costly to access. Most existing methods only focus on synthesizing missing images between two modalities, which limits their robustness and efficiency when multiple modalities are missing. To address this problem, we propose a multi-modality generative adversarial network (MGAN) to synthesize three high-quality MR modalities (FLAIR, T1 and T1ce) from one MR modality T2 simultaneously. The experimental results show that the quality of the synthesized images by our proposed methods is better than the one synthesized by the baseline model, pix2pix. Besides, for MR brain image synthesis, it is important to preserve the critical tumor information in the generated modalities, so we further introduce a multi-modality tumor consistency loss to MGAN, called TC-MGAN. We use the synthesized modalities by TC-MGAN to boost the tumor segmentation accuracy, and the results demonstrate its effectiveness.

Learning Two-View Correspondences and Geometry Using Order-Aware Network

Establishing correspondences between two images requires both local and global spatial context. Given putative correspondences of feature points in two views, in this paper, we propose Order-Aware Network, which infers the probabilities of correspondences being inliers and regresses the relative pose encoded by the essential matrix. Specifically, this proposed network is built hierarchically and comprises three novel operations. First, to capture the local context of sparse correspondences, the network clusters unordered input correspondences by learning a soft assignment matrix. These clusters are in a canonical order and invariant to input permutations. Next, the clusters are spatially correlated to form the global context of correspondences. After that, the context-encoded clusters are recovered back to the original size through a proposed upsampling operator. We intensively experiment on both outdoor and indoor datasets. The accuracy of the two-view geometry and correspondences are significantly improved over the state-of-the-arts. Code will be available at https://github.com/zjhthu/OANet.git.

Efficient Semantic Scene Completion Network with Spatial Group Convolution

We introduce Spatial Group Convolution (SGC) for accelerating the computation of 3D dense prediction tasks. SGC is orthogonal to group convolution, which works on spatial dimensions rather than feature channel dimension. It divides input voxels into different groups, then conducts 3D sparse convolution on these separated groups. As only valid voxels are considered when performing convolution, computation can be significantly reduced with a slight loss of accuracy. The proposed operations are validated on semantic scene completion task, which aims to predict a complete 3D volume with semantic labels from a single depth image. With SGC, we further present an efficient 3D sparse convolutional network, which harnesses a multiscale architecture and a coarse-to-fine prediction strategy. Evaluations are conducted on the SUNCG dataset, achieving state-of-the-art performance and fast speed. Code is available at https://github.com/zjhthu/SGC-Release.git

Reconstruction and Registration of Large-Scale Medical Scene Using Point Clouds Data from Different Modalities

Sensing the medical scenario can ensure the safety during the surgical operations. So, in this regard, a monitor platform which can obtain the accurate location information of the surgery room is desperately needed. Compared to 2D camera image, 3D data contains more information of distance and direction. Therefore, 3D sensors are more suitable to be used in surgical scene monitoring. However, each 3D sensor has its own limitations. For example, Lidar (Light Detection and Ranging) can detect large-scale environment with high precision, but the point clouds or depth maps are very sparse. As for commodity RGBD sensors, such as Kinect, can accurately capture denser data, but limited to a small range from 0.5 to 4.5m. So, a proper method which can address these problems for fusing different modalities data is important. In this paper, we proposed a method which can fuse different modalities 3D data to get a large-scale and dense point cloud. The key contributions of our work are as follows. First, we proposed a 3D data collecting system to reconstruct the medical scenes. By fusing the Lidar and Kinect data, a large-scale medical scene with more details can be reconstructed. Second, we proposed a location-based fast point clouds registration algorithm to deal with different modality datasets.