Axis-Aligned 3D Stalk Diameter Estimation from RGB-D Imagery

Accurate, high-throughput phenotyping is a critical component of modern crop breeding programs, especially for improving traits such as mechanical stability, biomass production, and disease resistance. Stalk diameter is a key structural trait, but traditional measurement methods are labor-intensive, error-prone, and unsuitable for scalable phenotyping. In this paper, we present a geometry-aware computer vision pipeline for estimating stalk diameter from RGB-D imagery. Our method integrates deep learning-based instance segmentation, 3D point cloud reconstruction, and axis-aligned slicing via Principal Component Analysis (PCA) to perform robust diameter estimation. By mitigating the effects of curvature, occlusion, and image noise, this approach offers a scalable and reliable solution to support high-throughput phenotyping in breeding and agronomic research.

Implicit Shape-Prior for Few-Shot Assisted 3D Segmentation

The objective of this paper is to significantly reduce the manual workload required from medical professionals in complex 3D segmentation tasks that cannot be yet fully automated. For instance, in radiotherapy planning, organs at risk must be accurately identified in computed tomography (CT) or magnetic resonance imaging (MRI) scans to ensure they are spared from harmful radiation. Similarly, diagnosing age-related degenerative diseases such as sarcopenia, which involve progressive muscle volume loss and strength, is commonly based on muscular mass measurements often obtained from manual segmentation of medical volumes. To alleviate the manual-segmentation burden, this paper introduces an implicit shape prior to segment volumes from sparse slice manual annotations generalized to the multi-organ case, along with a simple framework for automatically selecting the most informative slices to guide and minimize the next interactions. The experimental validation shows the method's effectiveness on two medical use cases: assisted segmentation in the context of at risks organs for brain cancer patients, and acceleration of the creation of a new database with unseen muscle shapes for patients with sarcopenia.

Live(r) Die: Predicting Survival in Colorectal Liver Metastasis

Colorectal cancer frequently metastasizes to the liver, significantly reducing long-term survival. While surgical resection is the only potentially curative treatment for colorectal liver metastasis (CRLM), patient outcomes vary widely depending on tumor characteristics along with clinical and genomic factors. Current prognostic models, often based on limited clinical or molecular features, lack sufficient predictive power, especially in multifocal CRLM cases. We present a fully automated framework for surgical outcome prediction from pre- and post-contrast MRI acquired before surgery. Our framework consists of a segmentation pipeline and a radiomics pipeline. The segmentation pipeline learns to segment the liver, tumors, and spleen from partially annotated data by leveraging promptable foundation models to complete missing labels. Also, we propose SAMONAI, a novel zero-shot 3D prompt propagation algorithm that leverages the Segment Anything Model to segment 3D regions of interest from a single point prompt, significantly improving our segmentation pipeline's accuracy and efficiency. The predicted pre- and post-contrast segmentations are then fed into our radiomics pipeline, which extracts features from each tumor and predicts survival using SurvAMINN, a novel autoencoder-based multiple instance neural network for survival analysis. SurvAMINN jointly learns dimensionality reduction and hazard prediction from right-censored survival data, focusing on the most aggressive tumors. Extensive evaluation on an institutional dataset comprising 227 patients demonstrates that our framework surpasses existing clinical and genomic biomarkers, delivering a C-index improvement exceeding 10%. Our results demonstrate the potential of integrating automated segmentation algorithms and radiomics-based survival analysis to deliver accurate, annotation-efficient, and interpretable outcome prediction in CRLM.

SGS-3D: High-Fidelity 3D Instance Segmentation via Reliable Semantic Mask Splitting and Growing

Accurate 3D instance segmentation is crucial for high-quality scene understanding in the 3D vision domain. However, 3D instance segmentation based on 2D-to-3D lifting approaches struggle to produce precise instance-level segmentation, due to accumulated errors introduced during the lifting process from ambiguous semantic guidance and insufficient depth constraints. To tackle these challenges, we propose splitting and growing reliable semantic mask for high-fidelity 3D instance segmentation (SGS-3D), a novel "split-then-grow" framework that first purifies and splits ambiguous lifted masks using geometric primitives, and then grows them into complete instances within the scene. Unlike existing approaches that directly rely on raw lifted masks and sacrifice segmentation accuracy, SGS-3D serves as a training-free refinement method that jointly fuses semantic and geometric information, enabling effective cooperation between the two levels of representation. Specifically, for semantic guidance, we introduce a mask filtering strategy that leverages the co-occurrence of 3D geometry primitives to identify and remove ambiguous masks, thereby ensuring more reliable semantic consistency with the 3D object instances. For the geometric refinement, we construct fine-grained object instances by exploiting both spatial continuity and high-level features, particularly in the case of semantic ambiguity between distinct objects. Experimental results on ScanNet200, ScanNet++, and KITTI-360 demonstrate that SGS-3D substantially improves segmentation accuracy and robustness against inaccurate masks from pre-trained models, yielding high-fidelity object instances while maintaining strong generalization across diverse indoor and outdoor environments. Code is available in the supplementary materials.

OmniMap: A General Mapping Framework Integrating Optics, Geometry, and Semantics

Robotic systems demand accurate and comprehensive 3D environment perception, requiring simultaneous capture of photo-realistic appearance (optical), precise layout shape (geometric), and open-vocabulary scene understanding (semantic). Existing methods typically achieve only partial fulfillment of these requirements while exhibiting optical blurring, geometric irregularities, and semantic ambiguities. To address these challenges, we propose OmniMap. Overall, OmniMap represents the first online mapping framework that simultaneously captures optical, geometric, and semantic scene attributes while maintaining real-time performance and model compactness. At the architectural level, OmniMap employs a tightly coupled 3DGS-Voxel hybrid representation that combines fine-grained modeling with structural stability. At the implementation level, OmniMap identifies key challenges across different modalities and introduces several innovations: adaptive camera modeling for motion blur and exposure compensation, hybrid incremental representation with normal constraints, and probabilistic fusion for robust instance-level understanding. Extensive experiments show OmniMap's superior performance in rendering fidelity, geometric accuracy, and zero-shot semantic segmentation compared to state-of-the-art methods across diverse scenes. The framework's versatility is further evidenced through a variety of downstream applications, including multi-domain scene Q&A, interactive editing, perception-guided manipulation, and map-assisted navigation.

treeX: Unsupervised Tree Instance Segmentation in Dense Forest Point Clouds

Close-range laser scanning provides detailed 3D captures of forest stands but requires efficient software for processing 3D point cloud data and extracting individual trees. Although recent studies have introduced deep learning methods for tree instance segmentation, these approaches require large annotated datasets and substantial computational resources. As a resource-efficient alternative, we present a revised version of the treeX algorithm, an unsupervised method that combines clustering-based stem detection with region growing for crown delineation. While the original treeX algorithm was developed for personal laser scanning (PLS) data, we provide two parameter presets, one for ground-based laser scanning (stationary terrestrial - TLS and PLS), and one for UAV-borne laser scanning (ULS). We evaluated the method on six public datasets (FOR-instance, ForestSemantic, LAUTx, NIBIO MLS, TreeLearn, Wytham Woods) and compared it to six open-source methods (original treeX, treeiso, RayCloudTools, ForAINet, SegmentAnyTree, TreeLearn). Compared to the original treeX algorithm, our revision reduces runtime and improves accuracy, with instance detection F$_1$-score gains of +0.11 to +0.49 for ground-based data. For ULS data, our preset achieves an F$_1$-score of 0.58, whereas the original algorithm fails to segment any correct instances. For TLS and PLS data, our algorithm achieves accuracy similar to recent open-source methods, including deep learning. Given its algorithmic design, we see two main applications for our method: (1) as a resource-efficient alternative to deep learning approaches in scenarios where the data characteristics align with the method design (sufficient stem visibility and point density), and (2) for the semi-automatic generation of labels for deep learning models. To enable broader adoption, we provide an open-source Python implementation in the pointtree package.

SeqVLM: Proposal-Guided Multi-View Sequences Reasoning via VLM for Zero-Shot 3D Visual Grounding

3D Visual Grounding (3DVG) aims to localize objects in 3D scenes using natural language descriptions. Although supervised methods achieve higher accuracy in constrained settings, zero-shot 3DVG holds greater promise for real-world applications since eliminating scene-specific training requirements. However, existing zero-shot methods face challenges of spatial-limited reasoning due to reliance on single-view localization, and contextual omissions or detail degradation. To address these issues, we propose SeqVLM, a novel zero-shot 3DVG framework that leverages multi-view real-world scene images with spatial information for target object reasoning. Specifically, SeqVLM first generates 3D instance proposals via a 3D semantic segmentation network and refines them through semantic filtering, retaining only semantic-relevant candidates. A proposal-guided multi-view projection strategy then projects these candidate proposals onto real scene image sequences, preserving spatial relationships and contextual details in the conversion process of 3D point cloud to images. Furthermore, to mitigate VLM computational overload, we implement a dynamic scheduling mechanism that iteratively processes sequances-query prompts, leveraging VLM's cross-modal reasoning capabilities to identify textually specified objects. Experiments on the ScanRefer and Nr3D benchmarks demonstrate state-of-the-art performance, achieving Acc@0.25 scores of 55.6% and 53.2%, surpassing previous zero-shot methods by 4.0% and 5.2%, respectively, which advance 3DVG toward greater generalization and real-world applicability. The code is available at https://github.com/JiawLin/SeqVLM.

RoofSeg: An edge-aware transformer-based network for end-to-end roof plane segmentation

Roof plane segmentation is one of the key procedures for reconstructing three-dimensional (3D) building models at levels of detail (LoD) 2 and 3 from airborne light detection and ranging (LiDAR) point clouds. The majority of current approaches for roof plane segmentation rely on the manually designed or learned features followed by some specifically designed geometric clustering strategies. Because the learned features are more powerful than the manually designed features, the deep learning-based approaches usually perform better than the traditional approaches. However, the current deep learning-based approaches have three unsolved problems. The first is that most of them are not truly end-to-end, the plane segmentation results may be not optimal. The second is that the point feature discriminability near the edges is relatively low, leading to inaccurate planar edges. The third is that the planar geometric characteristics are not sufficiently considered to constrain the network training. To solve these issues, a novel edge-aware transformer-based network, named RoofSeg, is developed for segmenting roof planes from LiDAR point clouds in a truly end-to-end manner. In the RoofSeg, we leverage a transformer encoder-decoder-based framework to hierarchically predict the plane instance masks with the use of a set of learnable plane queries. To further improve the segmentation accuracy of edge regions, we also design an Edge-Aware Mask Module (EAMM) that sufficiently incorporates planar geometric prior of edges to enhance its discriminability for plane instance mask refinement. In addition, we propose an adaptive weighting strategy in the mask loss to reduce the influence of misclassified points, and also propose a new plane geometric loss to constrain the network training.

GRASPTrack: Geometry-Reasoned Association via Segmentation and Projection for Multi-Object Tracking

Multi-object tracking (MOT) in monocular videos is fundamentally challenged by occlusions and depth ambiguity, issues that conventional tracking-by-detection (TBD) methods struggle to resolve owing to a lack of geometric awareness. To address these limitations, we introduce GRASPTrack, a novel depth-aware MOT framework that integrates monocular depth estimation and instance segmentation into a standard TBD pipeline to generate high-fidelity 3D point clouds from 2D detections, thereby enabling explicit 3D geometric reasoning. These 3D point clouds are then voxelized to enable a precise and robust Voxel-Based 3D Intersection-over-Union (IoU) for spatial association. To further enhance tracking robustness, our approach incorporates Depth-aware Adaptive Noise Compensation, which dynamically adjusts the Kalman filter process noise based on occlusion severity for more reliable state estimation. Additionally, we propose a Depth-enhanced Observation-Centric Momentum, which extends the motion direction consistency from the image plane into 3D space to improve motion-based association cues, particularly for objects with complex trajectories. Extensive experiments on the MOT17, MOT20, and DanceTrack benchmarks demonstrate that our method achieves competitive performance, significantly improving tracking robustness in complex scenes with frequent occlusions and intricate motion patterns.

SAGOnline: Segment Any Gaussians Online

3D Gaussian Splatting (3DGS) has emerged as a powerful paradigm for explicit 3D scene representation, yet achieving efficient and consistent 3D segmentation remains challenging. Current methods suffer from prohibitive computational costs, limited 3D spatial reasoning, and an inability to track multiple objects simultaneously. We present Segment Any Gaussians Online (SAGOnline), a lightweight and zero-shot framework for real-time 3D segmentation in Gaussian scenes that addresses these limitations through two key innovations: (1) a decoupled strategy that integrates video foundation models (e.g., SAM2) for view-consistent 2D mask propagation across synthesized views; and (2) a GPU-accelerated 3D mask generation and Gaussian-level instance labeling algorithm that assigns unique identifiers to 3D primitives, enabling lossless multi-object tracking and segmentation across views. SAGOnline achieves state-of-the-art performance on NVOS (92.7% mIoU) and Spin-NeRF (95.2% mIoU) benchmarks, outperforming Feature3DGS, OmniSeg3D-gs, and SA3D by 15--1500 times in inference speed (27 ms/frame). Qualitative results demonstrate robust multi-object segmentation and tracking in complex scenes. Our contributions include: (i) a lightweight and zero-shot framework for 3D segmentation in Gaussian scenes, (ii) explicit labeling of Gaussian primitives enabling simultaneous segmentation and tracking, and (iii) the effective adaptation of 2D video foundation models to the 3D domain. This work allows real-time rendering and 3D scene understanding, paving the way for practical AR/VR and robotic applications.