Vision Transformers for Zero-Shot Clustering of Animal Images: A Comparative Benchmarking Study

Manual labeling of animal images remains a significant bottleneck in ecological research, limiting the scale and efficiency of biodiversity monitoring efforts. This study investigates whether state-of-the-art Vision Transformer (ViT) foundation models can reduce thousands of unlabeled animal images directly to species-level clusters. We present a comprehensive benchmarking framework evaluating five ViT models combined with five dimensionality reduction techniques and four clustering algorithms, two supervised and two unsupervised, across 60 species (30 mammals and 30 birds), with each test using a random subset of 200 validated images per species. We investigate when clustering succeeds at species-level, where it fails, and whether clustering within the species-level reveals ecologically meaningful patterns such as sex, age, or phenotypic variation. Our results demonstrate near-perfect species-level clustering (V-measure: 0.958) using DINOv3 embeddings with t-SNE and supervised hierarchical clustering methods. Unsupervised approaches achieve competitive performance (0.943) while requiring no prior species knowledge, rejecting only 1.14% of images as outliers requiring expert review. We further demonstrate robustness to realistic long-tailed distributions of species and show that intentional over-clustering can reliably extract intra-specific variation including age classes, sexual dimorphism, and pelage differences. We introduce an open-source benchmarking toolkit and provide recommendations for ecologists to select appropriate methods for sorting their specific taxonomic groups and data.

FOVI: A biologically-inspired foveated interface for deep vision models

Human vision is foveated, with variable resolution peaking at the center of a large field of view; this reflects an efficient trade-off for active sensing, allowing eye-movements to bring different parts of the world into focus with other parts of the world in context. In contrast, most computer vision systems encode the visual world at a uniform resolution, raising challenges for processing full-field high-resolution images efficiently. We propose a foveated vision interface (FOVI) based on the human retina and primary visual cortex, that reformats a variable-resolution retina-like sensor array into a uniformly dense, V1-like sensor manifold. Receptive fields are defined as k-nearest-neighborhoods (kNNs) on the sensor manifold, enabling kNN-convolution via a novel kernel mapping technique. We demonstrate two use cases: (1) an end-to-end kNN-convolutional architecture, and (2) a foveated adaptation of the foundational DINOv3 ViT model, leveraging low-rank adaptation (LoRA). These models provide competitive performance at a fraction of the computational cost of non-foveated baselines, opening pathways for efficient and scalable active sensing for high-resolution egocentric vision. Code and pre-trained models are available at https://github.com/nblauch/fovi and https://huggingface.co/fovi-pytorch.

LoopViT: Scaling Visual ARC with Looped Transformers

Recent advances in visual reasoning have leveraged vision transformers to tackle the ARC-AGI benchmark. However, we argue that the feed-forward architecture, where computational depth is strictly bound to parameter size, falls short of capturing the iterative, algorithmic nature of human induction. In this work, we propose a recursive architecture called Loop-ViT, which decouples reasoning depth from model capacity through weight-tied recurrence. Loop-ViT iterates a weight-tied Hybrid Block, combining local convolutions and global attention, to form a latent chain of thought. Crucially, we introduce a parameter-free Dynamic Exit mechanism based on predictive entropy: the model halts inference when its internal state ``crystallizes" into a low-uncertainty attractor. Empirical results on the ARC-AGI-1 benchmark validate this perspective: our 18M model achieves 65.8% accuracy, outperforming massive 73M-parameter ensembles. These findings demonstrate that adaptive iterative computation offers a far more efficient scaling axis for visual reasoning than simply increasing network width. The code is available at https://github.com/WenjieShu/LoopViT.

A Hybrid Mamba-SAM Architecture for Efficient 3D Medical Image Segmentation

Accurate segmentation of 3D medical images such as MRI and CT is essential for clinical diagnosis and treatment planning. Foundation models like the Segment Anything Model (SAM) provide powerful general-purpose representations but struggle in medical imaging due to domain shift, their inherently 2D design, and the high computational cost of fine-tuning. To address these challenges, we propose Mamba-SAM, a novel and efficient hybrid architecture that combines a frozen SAM encoder with the linear-time efficiency and long-range modeling capabilities of Mamba-based State Space Models (SSMs). We investigate two parameter-efficient adaptation strategies. The first is a dual-branch architecture that explicitly fuses general features from a frozen SAM encoder with domain-specific representations learned by a trainable VMamba encoder using cross-attention. The second is an adapter-based approach that injects lightweight, 3D-aware Tri-Plane Mamba (TPMamba) modules into the frozen SAM ViT encoder to implicitly model volumetric context. Within this framework, we introduce Multi-Frequency Gated Convolution (MFGC), which enhances feature representation by jointly analyzing spatial and frequency-domain information via 3D discrete cosine transforms and adaptive gating. Extensive experiments on the ACDC cardiac MRI dataset demonstrate the effectiveness of the proposed methods. The dual-branch Mamba-SAM-Base model achieves a mean Dice score of 0.906, comparable to UNet++ (0.907), while outperforming all baselines on Myocardium (0.910) and Left Ventricle (0.971) segmentation. The adapter-based TP MFGC variant offers superior inference speed (4.77 FPS) with strong accuracy (0.880 Dice). These results show that hybridizing foundation models with efficient SSM-based architectures provides a practical and effective solution for 3D medical image segmentation.

RepSFNet : A Single Fusion Network with Structural Reparameterization for Crowd Counting

Crowd counting remains challenging in variable-density scenes due to scale variations, occlusions, and the high computational cost of existing models. To address these issues, we propose RepSFNet (Reparameterized Single Fusion Network), a lightweight architecture designed for accurate and real-time crowd estimation. RepSFNet leverages a RepLK-ViT backbone with large reparameterized kernels for efficient multi-scale feature extraction. It further integrates a Feature Fusion module combining Atrous Spatial Pyramid Pooling (ASPP) and Context-Aware Network (CAN) to achieve robust, density-adaptive context modeling. A Concatenate Fusion module is employed to preserve spatial resolution and generate high-quality density maps. By avoiding attention mechanisms and multi-branch designs, RepSFNet significantly reduces parameters and computational complexity. The training objective combines Mean Squared Error and Optimal Transport loss to improve both count accuracy and spatial distribution alignment. Experiments conducted on ShanghaiTech, NWPU, and UCF-QNRF datasets demonstrate that RepSFNet achieves competitive accuracy while reducing inference latency by up to 34 percent compared to recent state-of-the-art methods, making it suitable for real-time and low-power edge computing applications.

Comparison of Image Processing Models in Quark Gluon Jet Classification

We present a comprehensive comparison of convolutional and transformer-based models for distinguishing quark and gluon jets using simulated jet images from Pythia 8. By encoding jet substructure into a three-channel representation of particle kinematics, we evaluate the performance of convolutional neural networks (CNNs), Vision Transformers (ViTs), and Swin Transformers (Swin-Tiny) under both supervised and self-supervised learning setups. Our results show that fine-tuning only the final two transformer blocks of the Swin-Tiny model achieves the best trade-off between efficiency and accuracy, reaching 81.4% accuracy and an AUC (area under the ROC curve) of 88.9%. Self-supervised pretraining with Momentum Contrast (MoCo) further enhances feature robustness and reduces the number of trainable parameters. These findings highlight the potential of hierarchical attention-based models for jet substructure studies and for domain transfer to real collision data.

MetricAnything: Scaling Metric Depth Pretraining with Noisy Heterogeneous Sources

Scaling has powered recent advances in vision foundation models, yet extending this paradigm to metric depth estimation remains challenging due to heterogeneous sensor noise, camera-dependent biases, and metric ambiguity in noisy cross-source 3D data. We introduce Metric Anything, a simple and scalable pretraining framework that learns metric depth from noisy, diverse 3D sources without manually engineered prompts, camera-specific modeling, or task-specific architectures. Central to our approach is the Sparse Metric Prompt, created by randomly masking depth maps, which serves as a universal interface that decouples spatial reasoning from sensor and camera biases. Using about 20M image-depth pairs spanning reconstructed, captured, and rendered 3D data across 10000 camera models, we demonstrate-for the first time-a clear scaling trend in the metric depth track. The pretrained model excels at prompt-driven tasks such as depth completion, super-resolution and Radar-camera fusion, while its distilled prompt-free student achieves state-of-the-art results on monocular depth estimation, camera intrinsics recovery, single/multi-view metric 3D reconstruction, and VLA planning. We also show that using pretrained ViT of Metric Anything as a visual encoder significantly boosts Multimodal Large Language Model capabilities in spatial intelligence. These results show that metric depth estimation can benefit from the same scaling laws that drive modern foundation models, establishing a new path toward scalable and efficient real-world metric perception. We open-source MetricAnything at http://metric-anything.github.io/metric-anything-io/ to support community research.

Scalable Analytic Classifiers with Associative Drift Compensation for Class-Incremental Learning of Vision Transformers

Class-incremental learning (CIL) with Vision Transformers (ViTs) faces a major computational bottleneck during the classifier reconstruction phase, where most existing methods rely on costly iterative stochastic gradient descent (SGD). We observe that analytic Regularized Gaussian Discriminant Analysis (RGDA) provides a Bayes-optimal alternative with accuracy comparable to SGD-based classifiers; however, its quadratic inference complexity limits its use in large-scale CIL scenarios. To overcome this, we propose Low-Rank Factorized RGDA (LR-RGDA), a scalable classifier that combines RGDA's expressivity with the efficiency of linear classifiers. By exploiting the low-rank structure of the covariance via the Woodbury matrix identity, LR-RGDA decomposes the discriminant function into a global affine term refined by a low-rank quadratic perturbation, reducing the inference complexity from $\mathcal{O}(Cd^2)$ to $\mathcal{O}(d^2 + Crd^2)$, where $C$ is the class number, $d$ the feature dimension, and $r \ll d$ the subspace rank. To mitigate representation drift caused by backbone updates, we further introduce Hopfield-based Distribution Compensator (HopDC), a training-free mechanism that uses modern continuous Hopfield Networks to recalibrate historical class statistics through associative memory dynamics on unlabeled anchors, accompanied by a theoretical bound on the estimation error. Extensive experiments on diverse CIL benchmarks demonstrate that our framework achieves state-of-the-art performance, providing a scalable solution for large-scale class-incremental learning with ViTs. Code: https://github.com/raoxuan98-hash/lr_rgda_hopdc.

Youtu-Parsing: Perception, Structuring and Recognition via High-Parallelism Decoding

This paper presents Youtu-Parsing, an efficient and versatile document parsing model designed for high-performance content extraction. The architecture employs a native Vision Transformer (ViT) featuring a dynamic-resolution visual encoder to extract shared document features, coupled with a prompt-guided Youtu-LLM-2B language model for layout analysis and region-prompted decoding. Leveraging this decoupled and feature-reusable framework, we introduce a high-parallelism decoding strategy comprising two core components: token parallelism and query parallelism. The token parallelism strategy concurrently generates up to 64 candidate tokens per inference step, which are subsequently validated through a verification mechanism. This approach yields a 5--11x speedup over traditional autoregressive decoding and is particularly well-suited for highly structured scenarios, such as table recognition. To further exploit the advantages of region-prompted decoding, the query parallelism strategy enables simultaneous content prediction for multiple bounding boxes (up to five), providing an additional 2x acceleration while maintaining output quality equivalent to standard decoding. Youtu-Parsing encompasses a diverse range of document elements, including text, formulas, tables, charts, seals, and hierarchical structures. Furthermore, the model exhibits strong robustness when handling rare characters, multilingual text, and handwritten content. Extensive evaluations demonstrate that Youtu-Parsing achieves state-of-the-art (SOTA) performance on both the OmniDocBench and olmOCR-bench benchmarks. Overall, Youtu-Parsing demonstrates significant experimental value and practical utility for large-scale document intelligence applications.

Semi-Supervised Masked Autoencoders: Unlocking Vision Transformer Potential with Limited Data

We address the challenge of training Vision Transformers (ViTs) when labeled data is scarce but unlabeled data is abundant. We propose Semi-Supervised Masked Autoencoder (SSMAE), a framework that jointly optimizes masked image reconstruction and classification using both unlabeled and labeled samples with dynamically selected pseudo-labels. SSMAE introduces a validation-driven gating mechanism that activates pseudo-labeling only after the model achieves reliable, high-confidence predictions that are consistent across both weakly and strongly augmented views of the same image, reducing confirmation bias. On CIFAR-10 and CIFAR-100, SSMAE consistently outperforms supervised ViT and fine-tuned MAE, with the largest gains in low-label regimes (+9.24% over ViT on CIFAR-10 with 10% labels). Our results demonstrate that when pseudo-labels are introduced is as important as how they are generated for data-efficient transformer training. Codes are available at https://github.com/atik666/ssmae.