Abstract:Graph classification in medical imaging and drug discovery requires accuracy and robust uncertainty quantification. To address this need, we introduce Conditional Prediction ROC (CP-ROC) bands, offering uncertainty quantification for ROC curves and robustness to distributional shifts in test data. Although developed for Tensorized Graph Neural Networks (TGNNs), CP-ROC is adaptable to general Graph Neural Networks (GNNs) and other machine learning models. We establish statistically guaranteed coverage for CP-ROC under a local exchangeability condition. This addresses uncertainty challenges for ROC curves under non-iid setting, ensuring reliability when test graph distributions differ from training data. Empirically, to establish local exchangeability for TGNNs, we introduce a data-driven approach to construct local calibration sets for graphs. Comprehensive evaluations show that CP-ROC significantly improves prediction reliability across diverse tasks. This method enhances uncertainty quantification efficiency and reliability for ROC curves, proving valuable for real-world applications with non-iid objects.
Abstract:Graph contrastive learning (GCL) has emerged as a promising approach to enhance graph neural networks' (GNNs) ability to learn rich representations from unlabeled graph-structured data. However, current GCL models face challenges with computational demands and limited feature utilization, often relying only on basic graph properties like node degrees and edge attributes. This constrains their capacity to fully capture the complex topological characteristics of real-world phenomena represented by graphs. To address these limitations, we propose Tensor-Fused Multi-View Graph Contrastive Learning (TensorMV-GCL), a novel framework that integrates extended persistent homology (EPH) with GCL representations and facilitates multi-scale feature extraction. Our approach uniquely employs tensor aggregation and compression to fuse information from graph and topological features obtained from multiple augmented views of the same graph. By incorporating tensor concatenation and contraction modules, we reduce computational overhead by separating feature tensor aggregation and transformation. Furthermore, we enhance the quality of learned topological features and model robustness through noise-injected EPH. Experiments on molecular, bioinformatic, and social network datasets demonstrate TensorMV-GCL's superiority, outperforming 15 state-of-the-art methods in graph classification tasks across 9 out of 11 benchmarks while achieving comparable results on the remaining two. The code for this paper is publicly available at https://github.com/CS-SAIL/Tensor-MV-GCL.git.
Abstract:Graph Neural Networks (GNNs) have become the de facto standard for analyzing graph-structured data, leveraging message-passing techniques to capture both structural and node feature information. However, recent studies have raised concerns about the statistical reliability of uncertainty estimates produced by GNNs. This paper addresses this crucial challenge by introducing a novel technique for quantifying uncertainty in non-exchangeable graph-structured data, while simultaneously reducing the size of label prediction sets in graph classification tasks. We propose Conformalized Tensor-based Topological Neural Networks (CF-T2NN), a new approach for rigorous prediction inference over graphs. CF-T2NN employs tensor decomposition and topological knowledge learning to navigate and interpret the inherent uncertainty in decision-making processes. This method enables a more nuanced understanding and handling of prediction uncertainties, enhancing the reliability and interpretability of neural network outcomes. Our empirical validation, conducted across 10 real-world datasets, demonstrates the superiority of CF-T2NN over a wide array of state-of-the-art methods on various graph benchmarks. This work not only enhances the GNN framework with robust uncertainty quantification capabilities but also sets a new standard for reliability and precision in graph-structured data analysis.
Abstract:The rapid growth of model scale has necessitated substantial computational resources for fine-tuning. Existing approach such as Low-Rank Adaptation (LoRA) has sought to address the problem of handling the large updated parameters in full fine-tuning. However, LoRA utilize random initialization and optimization of low-rank matrices to approximate updated weights, which can result in suboptimal convergence and an accuracy gap compared to full fine-tuning. To address these issues, we propose LoLDU, a Parameter-Efficient Fine-Tuning (PEFT) approach that significantly reduces trainable parameters by 2600 times compared to regular PEFT methods while maintaining comparable performance. LoLDU leverages Lower-Diag-Upper Decomposition (LDU) to initialize low-rank matrices for faster convergence and orthogonality. We focus on optimizing the diagonal matrix for scaling transformations. To the best of our knowledge, LoLDU has the fewest parameters among all PEFT approaches. We conducted extensive experiments across 4 instruction-following datasets, 6 natural language understanding (NLU) datasets, 8 image classification datasets, and image generation datasets with multiple model types (LLaMA2, RoBERTa, ViT, and Stable Diffusion), providing a comprehensive and detailed analysis. Our open-source code can be accessed at \href{https://github.com/SKDDJ/LoLDU}{https://github.com/SKDDJ/LoLDU}.
Abstract:Large pre-trained models (LPMs) have demonstrated exceptional performance in diverse natural language processing and computer vision tasks. However, fully fine-tuning these models poses substantial memory challenges, particularly in resource-constrained environments. Parameter-efficient fine-tuning (PEFT) methods, such as LoRA, mitigate this issue by adjusting only a small subset of parameters. Nevertheless, these methods typically employ random initialization for low-rank matrices, which can lead to inefficiencies in gradient descent and diminished generalizability due to suboptimal starting points. To address these limitations, we propose SVFit, a novel PEFT approach that leverages singular value decomposition (SVD) to initialize low-rank matrices using critical singular values as trainable parameters. Specifically, SVFit performs SVD on the pre-trained weight matrix to obtain the best rank-r approximation matrix, emphasizing the most critical singular values that capture over 99% of the matrix's information. These top-r singular values are then used as trainable parameters to scale the fundamental subspaces of the matrix, facilitating rapid domain adaptation. Extensive experiments across various pre-trained models in natural language understanding, text-to-image generation, and image classification tasks reveal that SVFit outperforms LoRA while requiring 16 times fewer trainable parameters.
Abstract:Personalized text-to-image generation has gained significant attention for its capability to generate high-fidelity portraits of specific identities conditioned on user-defined prompts. Existing methods typically involve test-time fine-tuning or instead incorporating an additional pre-trained branch. However, these approaches struggle to simultaneously address the demands of efficiency, identity fidelity, and preserving the model's original generative capabilities. In this paper, we propose DiffLoRA, a novel approach that leverages diffusion models as a hypernetwork to predict personalized low-rank adaptation (LoRA) weights based on the reference images. By integrating these LoRA weights into the text-to-image model, DiffLoRA achieves personalization during inference without further training. Additionally, we propose an identity-oriented LoRA weight construction pipeline to facilitate the training of DiffLoRA. By utilizing the dataset produced by this pipeline, our DiffLoRA consistently generates high-performance and accurate LoRA weights. Extensive evaluations demonstrate the effectiveness of our method, achieving both time efficiency and maintaining identity fidelity throughout the personalization process.