Revisiting Self-Supervised Heterogeneous Graph Learning from Spectral Clustering Perspective

Self-supervised heterogeneous graph learning (SHGL) has shown promising potential in diverse scenarios. However, while existing SHGL methods share a similar essential with clustering approaches, they encounter two significant limitations: (i) noise in graph structures is often introduced during the message-passing process to weaken node representations, and (ii) cluster-level information may be inadequately captured and leveraged, diminishing the performance in downstream tasks. In this paper, we address these limitations by theoretically revisiting SHGL from the spectral clustering perspective and introducing a novel framework enhanced by rank and dual consistency constraints. Specifically, our framework incorporates a rank-constrained spectral clustering method that refines the affinity matrix to exclude noise effectively. Additionally, we integrate node-level and cluster-level consistency constraints that concurrently capture invariant and clustering information to facilitate learning in downstream tasks. We theoretically demonstrate that the learned representations are divided into distinct partitions based on the number of classes and exhibit enhanced generalization ability across tasks. Experimental results affirm the superiority of our method, showcasing remarkable improvements in several downstream tasks compared to existing methods.

Trustful LLMs: Customizing and Grounding Text Generation with Knowledge Bases and Dual Decoders

Although people are impressed by the content generation skills of large language models, the use of LLMs, such as ChatGPT, is limited by the domain grounding of the content. The correctness and groundedness of the generated content need to be based on a verified context, such as results from Retrieval-Augmented Generation (RAG). One important issue when adapting LLMs to a customized domain is that the generated responses are often incomplete, or the additions are not verified and may even be hallucinated. Prior studies on hallucination detection have focused on evaluation metrics, which are not easily adaptable to dynamic domains and can be vulnerable to attacks like jail-breaking. In this work, we propose 1) a post-processing algorithm that leverages knowledge triplets in RAG context to correct hallucinations and 2) a dual-decoder model that fuses RAG context to guide the generation process.

ELU-GCN: Effectively Label-Utilizing Graph Convolutional Network

The message-passing mechanism of graph convolutional networks (i.e., GCNs) enables label information to be propagated to a broader range of neighbors, thereby increasing the utilization of labels. However, the label information is not always effectively utilized in the traditional GCN framework. To address this issue, we propose a new two-step framework called ELU-GCN. In the first stage, ELU-GCN conducts graph learning to learn a new graph structure (\ie ELU-graph), which enables GCNs to effectively utilize label information. In the second stage, we design a new graph contrastive learning on the GCN framework for representation learning by exploring the consistency and mutually exclusive information between the learned ELU graph and the original graph. Moreover, we theoretically demonstrate that the proposed method can ensure the generalization ability of GCNs. Extensive experiments validate the superiority of the proposed method.

HG-Adapter: Improving Pre-Trained Heterogeneous Graph Neural Networks with Dual Adapters

The "pre-train, prompt-tuning'' paradigm has demonstrated impressive performance for tuning pre-trained heterogeneous graph neural networks (HGNNs) by mitigating the gap between pre-trained models and downstream tasks. However, most prompt-tuning-based works may face at least two limitations: (i) the model may be insufficient to fit the graph structures well as they are generally ignored in the prompt-tuning stage, increasing the training error to decrease the generalization ability; and (ii) the model may suffer from the limited labeled data during the prompt-tuning stage, leading to a large generalization gap between the training error and the test error to further affect the model generalization. To alleviate the above limitations, we first derive the generalization error bound for existing prompt-tuning-based methods, and then propose a unified framework that combines two new adapters with potential labeled data extension to improve the generalization of pre-trained HGNN models. Specifically, we design dual structure-aware adapters to adaptively fit task-related homogeneous and heterogeneous structural information. We further design a label-propagated contrastive loss and two self-supervised losses to optimize dual adapters and incorporate unlabeled nodes as potential labeled data. Theoretical analysis indicates that the proposed method achieves a lower generalization error bound than existing methods, thus obtaining superior generalization ability. Comprehensive experiments demonstrate the effectiveness and generalization of the proposed method on different downstream tasks.

On Efficient Variants of Segment Anything Model: A Survey

The Segment Anything Model (SAM) is a foundational model for image segmentation tasks, known for its strong generalization across diverse applications. However, its impressive performance comes with significant computational and resource demands, making it challenging to deploy in resource-limited environments such as mobile devices. To address this, a variety of SAM variants have been proposed to enhance efficiency without sacrificing accuracy. This survey provides the first comprehensive review of these efficient SAM variants. We begin by exploring the motivations driving this research. We then present core techniques used in SAM and model acceleration. This is followed by an in-depth analysis of various acceleration strategies, categorized by approach. Finally, we offer a unified and extensive evaluation of these methods, assessing their efficiency and accuracy on representative benchmarks, and providing a clear comparison of their overall performance.

Predicting Lung Cancer Patient Prognosis with Large Language Models

Prognosis prediction is crucial for determining optimal treatment plans for lung cancer patients. Traditionally, such predictions relied on models developed from retrospective patient data. Recently, large language models (LLMs) have gained attention for their ability to process and generate text based on extensive learned knowledge. In this study, we evaluate the potential of GPT-4o mini and GPT-3.5 in predicting the prognosis of lung cancer patients. We collected two prognosis datasets, i.e., survival and post-operative complication datasets, and designed multiple tasks to assess the models' performance comprehensively. Logistic regression models were also developed as baselines for comparison. The experimental results demonstrate that LLMs can achieve competitive, and in some tasks superior, performance in lung cancer prognosis prediction compared to data-driven logistic regression models despite not using additional patient data. These findings suggest that LLMs can be effective tools for prognosis prediction in lung cancer, particularly when patient data is limited or unavailable.

The Power of Combining Data and Knowledge: GPT-4o is an Effective Interpreter of Machine Learning Models in Predicting Lymph Node Metastasis of Lung Cancer

Lymph node metastasis (LNM) is a crucial factor in determining the initial treatment for patients with lung cancer, yet accurate preoperative diagnosis of LNM remains challenging. Recently, large language models (LLMs) have garnered significant attention due to their remarkable text generation capabilities. Leveraging the extensive medical knowledge learned from vast corpora, LLMs can estimate probabilities for clinical problems, though their performance has historically been inferior to data-driven machine learning models. In this paper, we propose a novel ensemble method that combines the medical knowledge acquired by LLMs with the latent patterns identified by machine learning models to enhance LNM prediction performance. Initially, we developed machine learning models using patient data. We then designed a prompt template to integrate the patient data with the predicted probability from the machine learning model. Subsequently, we instructed GPT-4o, the most advanced LLM developed by OpenAI, to estimate the likelihood of LNM based on patient data and then adjust the estimate using the machine learning output. Finally, we collected three outputs from the GPT-4o using the same prompt and ensembled these results as the final prediction. Using the proposed method, our models achieved an AUC value of 0.765 and an AP value of 0.415 for LNM prediction, significantly improving predictive performance compared to baseline machine learning models. The experimental results indicate that GPT-4o can effectively leverage its medical knowledge and the probabilities predicted by machine learning models to achieve more accurate LNM predictions. These findings demonstrate that LLMs can perform well in clinical risk prediction tasks, offering a new paradigm for integrating medical knowledge and patient data in clinical predictions.

ConU: Conformal Uncertainty in Large Language Models with Correctness Coverage Guarantees

Uncertainty quantification (UQ) in natural language generation (NLG) tasks remains an open challenge, exacerbated by the intricate nature of the recent large language models (LLMs). This study investigates adapting conformal prediction (CP), which can convert any heuristic measure of uncertainty into rigorous theoretical guarantees by constructing prediction sets, for black-box LLMs in open-ended NLG tasks. We propose a sampling-based uncertainty measure leveraging self-consistency and develop a conformal uncertainty criterion by integrating the uncertainty condition aligned with correctness into the design of the CP algorithm. Experimental results indicate that our uncertainty measure generally surpasses prior state-of-the-art methods. Furthermore, we calibrate the prediction sets within the model's unfixed answer distribution and achieve strict control over the correctness coverage rate across 6 LLMs on 4 free-form NLG datasets, spanning general-purpose and medical domains, while the small average set size further highlights the efficiency of our method in providing trustworthy guarantees for practical open-ended NLG applications.

The current status of large language models in summarizing radiology report impressions

Large language models (LLMs) like ChatGPT show excellent capabilities in various natural language processing tasks, especially for text generation. The effectiveness of LLMs in summarizing radiology report impressions remains unclear. In this study, we explore the capability of eight LLMs on the radiology report impression summarization. Three types of radiology reports, i.e., CT, PET-CT, and Ultrasound reports, are collected from Peking University Cancer Hospital and Institute. We use the report findings to construct the zero-shot, one-shot, and three-shot prompts with complete example reports to generate the impressions. Besides the automatic quantitative evaluation metrics, we define five human evaluation metrics, i.e., completeness, correctness, conciseness, verisimilitude, and replaceability, to evaluate the semantics of the generated impressions. Two thoracic surgeons (ZSY and LB) and one radiologist (LQ) compare the generated impressions with the reference impressions and score each impression under the five human evaluation metrics. Experimental results show that there is a gap between the generated impressions and reference impressions. Although the LLMs achieve comparable performance in completeness and correctness, the conciseness and verisimilitude scores are not very high. Using few-shot prompts can improve the LLMs' performance in conciseness and verisimilitude, but the clinicians still think the LLMs can not replace the radiologists in summarizing the radiology impressions.

Noisy Node Classification by Bi-level Optimization based Multi-teacher Distillation

Previous graph neural networks (GNNs) usually assume that the graph data is with clean labels for representation learning, but it is not true in real applications. In this paper, we propose a new multi-teacher distillation method based on bi-level optimization (namely BO-NNC), to conduct noisy node classification on the graph data. Specifically, we first employ multiple self-supervised learning methods to train diverse teacher models, and then aggregate their predictions through a teacher weight matrix. Furthermore, we design a new bi-level optimization strategy to dynamically adjust the teacher weight matrix based on the training progress of the student model. Finally, we design a label improvement module to improve the label quality. Extensive experimental results on real datasets show that our method achieves the best results compared to state-of-the-art methods.