All-in-one Weather-degraded Image Restoration via Adaptive Degradation-aware Self-prompting Model

Existing approaches for all-in-one weather-degraded image restoration suffer from inefficiencies in leveraging degradation-aware priors, resulting in sub-optimal performance in adapting to different weather conditions. To this end, we develop an adaptive degradation-aware self-prompting model (ADSM) for all-in-one weather-degraded image restoration. Specifically, our model employs the contrastive language-image pre-training model (CLIP) to facilitate the training of our proposed latent prompt generators (LPGs), which represent three types of latent prompts to characterize the degradation type, degradation property and image caption. Moreover, we integrate the acquired degradation-aware prompts into the time embedding of diffusion model to improve degradation perception. Meanwhile, we employ the latent caption prompt to guide the reverse sampling process using the cross-attention mechanism, thereby guiding the accurate image reconstruction. Furthermore, to accelerate the reverse sampling procedure of diffusion model and address the limitations of frequency perception, we introduce a wavelet-oriented noise estimating network (WNE-Net). Extensive experiments conducted on eight publicly available datasets demonstrate the effectiveness of our proposed approach in both task-specific and all-in-one applications.

VividMed: Vision Language Model with Versatile Visual Grounding for Medicine

Recent advancements in Vision Language Models (VLMs) have demonstrated remarkable promise in generating visually grounded responses. However, their application in the medical domain is hindered by unique challenges. For instance, most VLMs rely on a single method of visual grounding, whereas complex medical tasks demand more versatile approaches. Additionally, while most VLMs process only 2D images, a large portion of medical images are 3D. The lack of medical data further compounds these obstacles. To address these challenges, we present VividMed, a vision language model with versatile visual grounding for medicine. Our model supports generating both semantic segmentation masks and instance-level bounding boxes, and accommodates various imaging modalities, including both 2D and 3D data. We design a three-stage training procedure and an automatic data synthesis pipeline based on open datasets and models. Besides visual grounding tasks, VividMed also excels in other common downstream tasks, including Visual Question Answering (VQA) and report generation. Ablation studies empirically show that the integration of visual grounding ability leads to improved performance on these tasks. Our code is publicly available at https://github.com/function2-llx/MMMM.

Unpaired Photo-realistic Image Deraining with Energy-informed Diffusion Model

Existing unpaired image deraining approaches face challenges in accurately capture the distinguishing characteristics between the rainy and clean domains, resulting in residual degradation and color distortion within the reconstructed images. To this end, we propose an energy-informed diffusion model for unpaired photo-realistic image deraining (UPID-EDM). Initially, we delve into the intricate visual-language priors embedded within the contrastive language-image pre-training model (CLIP), and demonstrate that the CLIP priors aid in the discrimination of rainy and clean images. Furthermore, we introduce a dual-consistent energy function (DEF) that retains the rain-irrelevant characteristics while eliminating the rain-relevant features. This energy function is trained by the non-corresponding rainy and clean images. In addition, we employ the rain-relevance discarding energy function (RDEF) and the rain-irrelevance preserving energy function (RPEF) to direct the reverse sampling procedure of a pre-trained diffusion model, effectively removing the rain streaks while preserving the image contents. Extensive experiments demonstrate that our energy-informed model surpasses the existing unpaired learning approaches in terms of both supervised and no-reference metrics.

Layered Diffusion Model for One-Shot High Resolution Text-to-Image Synthesis

We present a one-shot text-to-image diffusion model that can generate high-resolution images from natural language descriptions. Our model employs a layered U-Net architecture that simultaneously synthesizes images at multiple resolution scales. We show that this method outperforms the baseline of synthesizing images only at the target resolution, while reducing the computational cost per step. We demonstrate that higher resolution synthesis can be achieved by layering convolutions at additional resolution scales, in contrast to other methods which require additional models for super-resolution synthesis.

HeMeNet: Heterogeneous Multichannel Equivariant Network for Protein Multitask Learning

Understanding and leveraging the 3D structures of proteins is central to a variety of biological and drug discovery tasks. While deep learning has been applied successfully for structure-based protein function prediction tasks, current methods usually employ distinct training for each task. However, each of the tasks is of small size, and such a single-task strategy hinders the models' performance and generalization ability. As some labeled 3D protein datasets are biologically related, combining multi-source datasets for larger-scale multi-task learning is one way to overcome this problem. In this paper, we propose a neural network model to address multiple tasks jointly upon the input of 3D protein structures. In particular, we first construct a standard structure-based multi-task benchmark called Protein-MT, consisting of 6 biologically relevant tasks, including affinity prediction and property prediction, integrated from 4 public datasets. Then, we develop a novel graph neural network for multi-task learning, dubbed Heterogeneous Multichannel Equivariant Network (HeMeNet), which is E(3) equivariant and able to capture heterogeneous relationships between different atoms. Besides, HeMeNet can achieve task-specific learning via the task-aware readout mechanism. Extensive evaluations on our benchmark verify the effectiveness of multi-task learning, and our model generally surpasses state-of-the-art models.

Denoising Autoregressive Representation Learning

In this paper, we explore a new generative approach for learning visual representations. Our method, DARL, employs a decoder-only Transformer to predict image patches autoregressively. We find that training with Mean Squared Error (MSE) alone leads to strong representations. To enhance the image generation ability, we replace the MSE loss with the diffusion objective by using a denoising patch decoder. We show that the learned representation can be improved by using tailored noise schedules and longer training in larger models. Notably, the optimal schedule differs significantly from the typical ones used in standard image diffusion models. Overall, despite its simple architecture, DARL delivers performance remarkably close to state-of-the-art masked prediction models under the fine-tuning protocol. This marks an important step towards a unified model capable of both visual perception and generation, effectively combining the strengths of autoregressive and denoising diffusion models.

RareBench: Can LLMs Serve as Rare Diseases Specialists?

Generalist Large Language Models (LLMs), such as GPT-4, have shown considerable promise in various domains, including medical diagnosis. Rare diseases, affecting approximately 300 million people worldwide, often have unsatisfactory clinical diagnosis rates primarily due to a lack of experienced physicians and the complexity of differentiating among many rare diseases. In this context, recent news such as "ChatGPT correctly diagnosed a 4-year-old's rare disease after 17 doctors failed" underscore LLMs' potential, yet underexplored, role in clinically diagnosing rare diseases. To bridge this research gap, we introduce RareBench, a pioneering benchmark designed to systematically evaluate the capabilities of LLMs on 4 critical dimensions within the realm of rare diseases. Meanwhile, we have compiled the largest open-source dataset on rare disease patients, establishing a benchmark for future studies in this domain. To facilitate differential diagnosis of rare diseases, we develop a dynamic few-shot prompt methodology, leveraging a comprehensive rare disease knowledge graph synthesized from multiple knowledge bases, significantly enhancing LLMs' diagnostic performance. Moreover, we present an exhaustive comparative study of GPT-4's diagnostic capabilities against those of specialist physicians. Our experimental findings underscore the promising potential of integrating LLMs into the clinical diagnostic process for rare diseases. This paves the way for exciting possibilities in future advancements in this field.

Automating Sound Change Prediction for Phylogenetic Inference: A Tukanoan Case Study

We describe a set of new methods to partially automate linguistic phylogenetic inference given (1) cognate sets with their respective protoforms and sound laws, (2) a mapping from phones to their articulatory features and (3) a typological database of sound changes. We train a neural network on these sound change data to weight articulatory distances between phones and predict intermediate sound change steps between historical protoforms and their modern descendants, replacing a linguistic expert in part of a parsimony-based phylogenetic inference algorithm. In our best experiments on Tukanoan languages, this method produces trees with a Generalized Quartet Distance of 0.12 from a tree that used expert annotations, a significant improvement over other semi-automated baselines. We discuss potential benefits and drawbacks to our neural approach and parsimony-based tree prediction. We also experiment with a minimal generalization learner for automatic sound law induction, finding it comparably effective to sound laws from expert annotation. Our code is publicly available at https://github.com/cmu-llab/aiscp.

Encoder-minimal and Decoder-minimal Framework for Remote Sensing Image Dehazing

Haze obscures remote sensing images, hindering valuable information extraction. To this end, we propose RSHazeNet, an encoder-minimal and decoder-minimal framework for efficient remote sensing image dehazing. Specifically, regarding the process of merging features within the same level, we develop an innovative module called intra-level transposed fusion module (ITFM). This module employs adaptive transposed self-attention to capture comprehensive context-aware information, facilitating the robust context-aware feature fusion. Meanwhile, we present a cross-level multi-view interaction module (CMIM) to enable effective interactions between features from various levels, mitigating the loss of information due to the repeated sampling operations. In addition, we propose a multi-view progressive extraction block (MPEB) that partitions the features into four distinct components and employs convolution with varying kernel sizes, groups, and dilation factors to facilitate view-progressive feature learning. Extensive experiments demonstrate the superiority of our proposed RSHazeNet. We release the source code and all pre-trained models at \url{https://github.com/chdwyb/RSHazeNet}.

Pre-trained Universal Medical Image Transformer

Self-supervised learning has emerged as a viable method to leverage the abundance of unlabeled medical imaging data, addressing the challenge of labeled data scarcity in medical image analysis. In particular, masked image modeling (MIM) with visual token reconstruction has shown promising results in the general computer vision (CV) domain and serves as a candidate for medical image analysis. However, the presence of heterogeneous 2D and 3D medical images often limits the volume and diversity of training data that can be effectively used for a single model structure. In this work, we propose a spatially adaptive convolution (SAC) module, which adaptively adjusts convolution parameters based on the voxel spacing of the input images. Employing this SAC module, we build a universal visual tokenizer and a universal Vision Transformer (ViT) capable of effectively processing a wide range of medical images with various imaging modalities and spatial properties. Moreover, in order to enhance the robustness of the visual tokenizer's reconstruction objective for MIM, we suggest to generalize the discrete token output of the visual tokenizer to a probabilistic soft token. We show that the generalized soft token representation can be effectively integrated with the prior distribution regularization through a constructive interpretation. As a result, we pre-train a universal visual tokenizer followed by a universal ViT via visual token reconstruction on 55 public medical image datasets, comprising over 9 million 2D slices (including over 48,000 3D images). This represents the largest, most comprehensive, and diverse dataset for pre-training 3D medical image models to our knowledge. Experimental results on downstream medical image classification and segmentation tasks demonstrate the superior performance of our model and improved label efficiency.