CovHuSeg: An Enhanced Approach for Kidney Pathology Segmentation

Segmentation has long been essential in computer vision due to its numerous real-world applications. However, most traditional deep learning and machine learning models need help to capture geometric features such as size and convexity of the segmentation targets, resulting in suboptimal outcomes. To resolve this problem, we propose using a CovHuSeg algorithm to solve the problem of kidney glomeruli segmentation. This simple post-processing method is specified to adapt to the segmentation of ball-shaped anomalies, including the glomerulus. Unlike other post-processing methods, the CovHuSeg algorithm assures that the outcome mask does not have holes in it or comes in unusual shapes that are impossible to be the shape of a glomerulus. We illustrate the effectiveness of our method by experimenting with multiple deep-learning models in the context of segmentation on kidney pathology images. The results show that all models have increased accuracy when using the CovHuSeg algorithm.

CaloChallenge 2022: A Community Challenge for Fast Calorimeter Simulation

We present the results of the "Fast Calorimeter Simulation Challenge 2022" - the CaloChallenge. We study state-of-the-art generative models on four calorimeter shower datasets of increasing dimensionality, ranging from a few hundred voxels to a few tens of thousand voxels. The 31 individual submissions span a wide range of current popular generative architectures, including Variational AutoEncoders (VAEs), Generative Adversarial Networks (GANs), Normalizing Flows, Diffusion models, and models based on Conditional Flow Matching. We compare all submissions in terms of quality of generated calorimeter showers, as well as shower generation time and model size. To assess the quality we use a broad range of different metrics including differences in 1-dimensional histograms of observables, KPD/FPD scores, AUCs of binary classifiers, and the log-posterior of a multiclass classifier. The results of the CaloChallenge provide the most complete and comprehensive survey of cutting-edge approaches to calorimeter fast simulation to date. In addition, our work provides a uniquely detailed perspective on the important problem of how to evaluate generative models. As such, the results presented here should be applicable for other domains that use generative AI and require fast and faithful generation of samples in a large phase space.

EEG2Rep: Enhancing Self-supervised EEG Representation Through Informative Masked Inputs

Self-supervised approaches for electroencephalography (EEG) representation learning face three specific challenges inherent to EEG data: (1) The low signal-to-noise ratio which challenges the quality of the representation learned, (2) The wide range of amplitudes from very small to relatively large due to factors such as the inter-subject variability, risks the models to be dominated by higher amplitude ranges, and (3) The absence of explicit segmentation in the continuous-valued sequences which can result in less informative representations. To address these challenges, we introduce EEG2Rep, a self-prediction approach for self-supervised representation learning from EEG. Two core novel components of EEG2Rep are as follows: 1) Instead of learning to predict the masked input from raw EEG, EEG2Rep learns to predict masked input in latent representation space, and 2) Instead of conventional masking methods, EEG2Rep uses a new semantic subsequence preserving (SSP) method which provides informative masked inputs to guide EEG2Rep to generate rich semantic representations. In experiments on 6 diverse EEG tasks with subject variability, EEG2Rep significantly outperforms state-of-the-art methods. We show that our semantic subsequence preserving improves the existing masking methods in self-prediction literature and find that preserving 50\% of EEG recordings will result in the most accurate results on all 6 tasks on average. Finally, we show that EEG2Rep is robust to noise addressing a significant challenge that exists in EEG data. Models and code are available at: https://github.com/Navidfoumani/EEG2Rep

Leveraging AI for Enhanced Software Effort Estimation: A Comprehensive Study and Framework Proposal

This paper presents an extensive study on the application of AI techniques for software effort estimation in the past five years from 2017 to 2023. By overcoming the limitations of traditional methods, the study aims to improve accuracy and reliability. Through performance evaluation and comparison with diverse Machine Learning models, including Artificial Neural Network (ANN), Support Vector Machine (SVM), Linear Regression, Random Forest and other techniques, the most effective method is identified. The proposed AI-based framework holds the potential to enhance project planning and resource allocation, contributing to the research area of software project effort estimation.

A Supervised Contrastive Learning Pretrain-Finetune Approach for Time Series

Foundation models have recently gained attention within the field of machine learning thanks to its efficiency in broad data processing. While researchers had attempted to extend this success to time series models, the main challenge is effectively extracting representations and transferring knowledge from pretraining datasets to the target finetuning dataset. To tackle this issue, we introduce a novel pretraining procedure that leverages supervised contrastive learning to distinguish features within each pretraining dataset. This pretraining phase enables a probabilistic similarity metric, which assesses the likelihood of a univariate sample being closely related to one of the pretraining datasets. Subsequently, using this similarity metric as a guide, we propose a fine-tuning procedure designed to enhance the accurate prediction of the target data by aligning it more closely with the learned dynamics of the pretraining datasets. Our experiments have shown promising results which demonstrate the efficacy of our approach.

AI Foundation Models for Weather and Climate: Applications, Design, and Implementation

Machine learning and deep learning methods have been widely explored in understanding the chaotic behavior of the atmosphere and furthering weather forecasting. There has been increasing interest from technology companies, government institutions, and meteorological agencies in building digital twins of the Earth. Recent approaches using transformers, physics-informed machine learning, and graph neural networks have demonstrated state-of-the-art performance on relatively narrow spatiotemporal scales and specific tasks. With the recent success of generative artificial intelligence (AI) using pre-trained transformers for language modeling and vision with prompt engineering and fine-tuning, we are now moving towards generalizable AI. In particular, we are witnessing the rise of AI foundation models that can perform competitively on multiple domain-specific downstream tasks. Despite this progress, we are still in the nascent stages of a generalizable AI model for global Earth system models, regional climate models, and mesoscale weather models. Here, we review current state-of-the-art AI approaches, primarily from transformer and operator learning literature in the context of meteorology. We provide our perspective on criteria for success towards a family of foundation models for nowcasting and forecasting weather and climate predictions. We also discuss how such models can perform competitively on downstream tasks such as downscaling (super-resolution), identifying conditions conducive to the occurrence of wildfires, and predicting consequential meteorological phenomena across various spatiotemporal scales such as hurricanes and atmospheric rivers. In particular, we examine current AI methodologies and contend they have matured enough to design and implement a weather foundation model.

TSMixer: Lightweight MLP-Mixer Model for Multivariate Time Series Forecasting

Transformers have gained popularity in time series forecasting for their ability to capture long-sequence interactions. However, their high memory and computing requirements pose a critical bottleneck for long-term forecasting. To address this, we propose TSMixer, a lightweight neural architecture exclusively composed of multi-layer perceptron (MLP) modules. TSMixer is designed for multivariate forecasting and representation learning on patched time series, providing an efficient alternative to Transformers. Our model draws inspiration from the success of MLP-Mixer models in computer vision. We demonstrate the challenges involved in adapting Vision MLP-Mixer for time series and introduce empirically validated components to enhance accuracy. This includes a novel design paradigm of attaching online reconciliation heads to the MLP-Mixer backbone, for explicitly modeling the time-series properties such as hierarchy and channel-correlations. We also propose a Hybrid channel modeling approach to effectively handle noisy channel interactions and generalization across diverse datasets, a common challenge in existing patch channel-mixing methods. Additionally, a simple gated attention mechanism is introduced in the backbone to prioritize important features. By incorporating these lightweight components, we significantly enhance the learning capability of simple MLP structures, outperforming complex Transformer models with minimal computing usage. Moreover, TSMixer's modular design enables compatibility with both supervised and masked self-supervised learning methods, making it a promising building block for time-series Foundation Models. TSMixer outperforms state-of-the-art MLP and Transformer models in forecasting by a considerable margin of 8-60%. It also outperforms the latest strong benchmarks of Patch-Transformer models (by 1-2%) with a significant reduction in memory and runtime (2-3X).

An End-to-End Time Series Model for Simultaneous Imputation and Forecast

Time series forecasting using historical data has been an interesting and challenging topic, especially when the data is corrupted by missing values. In many industrial problem, it is important to learn the inference function between the auxiliary observations and target variables as it provides additional knowledge when the data is not fully observed. We develop an end-to-end time series model that aims to learn the such inference relation and make a multiple-step ahead forecast. Our framework trains jointly two neural networks, one to learn the feature-wise correlations and the other for the modeling of temporal behaviors. Our model is capable of simultaneously imputing the missing entries and making a multiple-step ahead prediction. The experiments show good overall performance of our framework over existing methods in both imputation and forecasting tasks.

COVID-19 Pneumonia Severity Prediction using Hybrid Convolution-Attention Neural Architectures

This study proposed a novel framework for COVID-19 severity prediction, which is a combination of data-centric and model-centric approaches. First, we propose a data-centric pre-training for extremely scare data scenarios of the investigating dataset. Second, we propose two hybrid convolution-attention neural architectures that leverage the self-attention from the Transformer and the Dense Associative Memory (Modern Hopfield networks). Our proposed approach achieves significant improvement from the conventional baseline approach. The best model from our proposed approach achieves $R^2 = 0.85 \pm 0.05$ and Pearson correlation coefficient $\rho = 0.92 \pm 0.02$ in geographic extend and $R^2 = 0.72 \pm 0.09, \rho = 0.85\pm 0.06$ in opacity prediction.

ICDAR 2021 Competition on Historical Map Segmentation

This paper presents the final results of the ICDAR 2021 Competition on Historical Map Segmentation (MapSeg), encouraging research on a series of historical atlases of Paris, France, drawn at 1/5000 scale between 1894 and 1937. The competition featured three tasks, awarded separately. Task~1 consists in detecting building blocks and was won by the L3IRIS team using a DenseNet-121 network trained in a weakly supervised fashion. This task is evaluated on 3 large images containing hundreds of shapes to detect. Task~2 consists in segmenting map content from the larger map sheet, and was won by the UWB team using a U-Net-like FCN combined with a binarization method to increase detection edge accuracy. Task~3 consists in locating intersection points of geo-referencing lines, and was also won by the UWB team who used a dedicated pipeline combining binarization, line detection with Hough transform, candidate filtering, and template matching for intersection refinement. Tasks~2 and~3 are evaluated on 95 map sheets with complex content. Dataset, evaluation tools and results are available under permissive licensing at \url{https://icdar21-mapseg.github.io/}.