TAMA: A Human-AI Collaborative Thematic Analysis Framework Using Multi-Agent LLMs for Clinical Interviews

Thematic analysis (TA) is a widely used qualitative approach for uncovering latent meanings in unstructured text data. TA provides valuable insights in healthcare but is resource-intensive. Large Language Models (LLMs) have been introduced to perform TA, yet their applications in healthcare remain unexplored. Here, we propose TAMA: A Human-AI Collaborative Thematic Analysis framework using Multi-Agent LLMs for clinical interviews. We leverage the scalability and coherence of multi-agent systems through structured conversations between agents and coordinate the expertise of cardiac experts in TA. Using interview transcripts from parents of children with Anomalous Aortic Origin of a Coronary Artery (AAOCA), a rare congenital heart disease, we demonstrate that TAMA outperforms existing LLM-assisted TA approaches, achieving higher thematic hit rate, coverage, and distinctiveness. TAMA demonstrates strong potential for automated TA in clinical settings by leveraging multi-agent LLM systems with human-in-the-loop integration by enhancing quality while significantly reducing manual workload.

Computation Mechanism Behind LLM Position Generalization

Most written natural languages are composed of sequences of words and sentences. Similar to humans, large language models (LLMs) exhibit flexibility in handling textual positions - a phenomenon we term position generalization. They can understand texts with position perturbations and generalize to longer texts than those encountered during training with the latest techniques. These phenomena suggest that LLMs handle positions tolerantly, but how LLMs computationally process positional relevance remains largely unexplored. This work connects the linguistic phenomenon with LLMs' computational mechanisms. We show how LLMs enforce certain computational mechanisms for the aforementioned tolerance in position perturbations. Despite the complex design of the self-attention mechanism, this work reveals that LLMs learn a counterintuitive disentanglement of attention logits. Their values show a 0.959 linear correlation with an approximation of the arithmetic sum of positional relevance and semantic importance. Furthermore, we identify a prevalent pattern in intermediate features, which we prove theoretically enables this effect. The pattern, which is different from how randomly initialized parameters would behave, suggests that it is a learned behavior rather than a natural result of the model architecture. Based on these findings, we provide computational explanations and criteria for LLMs' position flexibilities. This work takes a pioneering step in linking position generalization with modern LLMs' internal mechanisms.

A Survey on Post-training of Large Language Models

The emergence of Large Language Models (LLMs) has fundamentally transformed natural language processing, making them indispensable across domains ranging from conversational systems to scientific exploration. However, their pre-trained architectures often reveal limitations in specialized contexts, including restricted reasoning capacities, ethical uncertainties, and suboptimal domain-specific performance. These challenges necessitate advanced post-training language models (PoLMs) to address these shortcomings, such as OpenAI-o1/o3 and DeepSeek-R1 (collectively known as Large Reasoning Models, or LRMs). This paper presents the first comprehensive survey of PoLMs, systematically tracing their evolution across five core paradigms: Fine-tuning, which enhances task-specific accuracy; Alignment, which ensures alignment with human preferences; Reasoning, which advances multi-step inference despite challenges in reward design; Efficiency, which optimizes resource utilization amidst increasing complexity; and Integration and Adaptation, which extend capabilities across diverse modalities while addressing coherence issues. Charting progress from ChatGPT's foundational alignment strategies to DeepSeek-R1's innovative reasoning advancements, we illustrate how PoLMs leverage datasets to mitigate biases, deepen reasoning capabilities, and enhance domain adaptability. Our contributions include a pioneering synthesis of PoLM evolution, a structured taxonomy categorizing techniques and datasets, and a strategic agenda emphasizing the role of LRMs in improving reasoning proficiency and domain flexibility. As the first survey of its scope, this work consolidates recent PoLM advancements and establishes a rigorous intellectual framework for future research, fostering the development of LLMs that excel in precision, ethical robustness, and versatility across scientific and societal applications.

MultiAgentBench: Evaluating the Collaboration and Competition of LLM agents

Large Language Models (LLMs) have shown remarkable capabilities as autonomous agents, yet existing benchmarks either focus on single-agent tasks or are confined to narrow domains, failing to capture the dynamics of multi-agent coordination and competition. In this paper, we introduce MultiAgentBench, a comprehensive benchmark designed to evaluate LLM-based multi-agent systems across diverse, interactive scenarios. Our framework measures not only task completion but also the quality of collaboration and competition using novel, milestone-based key performance indicators. Moreover, we evaluate various coordination protocols (including star, chain, tree, and graph topologies) and innovative strategies such as group discussion and cognitive planning. Notably, gpt-4o-mini reaches the average highest task score, graph structure performs the best among coordination protocols in the research scenario, and cognitive planning improves milestone achievement rates by 3%. Code and datasets are public available at https://github.com/MultiagentBench/MARBLE.

MM-PoisonRAG: Disrupting Multimodal RAG with Local and Global Poisoning Attacks

Multimodal large language models (MLLMs) equipped with Retrieval Augmented Generation (RAG) leverage both their rich parametric knowledge and the dynamic, external knowledge to excel in tasks such as Question Answering. While RAG enhances MLLMs by grounding responses in query-relevant external knowledge, this reliance poses a critical yet underexplored safety risk: knowledge poisoning attacks, where misinformation or irrelevant knowledge is intentionally injected into external knowledge bases to manipulate model outputs to be incorrect and even harmful. To expose such vulnerabilities in multimodal RAG, we propose MM-PoisonRAG, a novel knowledge poisoning attack framework with two attack strategies: Localized Poisoning Attack (LPA), which injects query-specific misinformation in both text and images for targeted manipulation, and Globalized Poisoning Attack (GPA) to provide false guidance during MLLM generation to elicit nonsensical responses across all queries. We evaluate our attacks across multiple tasks, models, and access settings, demonstrating that LPA successfully manipulates the MLLM to generate attacker-controlled answers, with a success rate of up to 56% on MultiModalQA. Moreover, GPA completely disrupts model generation to 0% accuracy with just a single irrelevant knowledge injection. Our results highlight the urgent need for robust defenses against knowledge poisoning to safeguard multimodal RAG frameworks.

Synthia: Novel Concept Design with Affordance Composition

Text-to-image (T2I) models enable rapid concept design, making them widely used in AI-driven design. While recent studies focus on generating semantic and stylistic variations of given design concepts, functional coherence--the integration of multiple affordances into a single coherent concept--remains largely overlooked. In this paper, we introduce SYNTHIA, a framework for generating novel, functionally coherent designs based on desired affordances. Our approach leverages a hierarchical concept ontology that decomposes concepts into parts and affordances, serving as a crucial building block for functionally coherent design. We also develop a curriculum learning scheme based on our ontology that contrastively fine-tunes T2I models to progressively learn affordance composition while maintaining visual novelty. To elaborate, we (i) gradually increase affordance distance, guiding models from basic concept-affordance association to complex affordance compositions that integrate parts of distinct affordances into a single, coherent form, and (ii) enforce visual novelty by employing contrastive objectives to push learned representations away from existing concepts. Experimental results show that SYNTHIA outperforms state-of-the-art T2I models, demonstrating absolute gains of 25.1% and 14.7% for novelty and functional coherence in human evaluation, respectively.

Entailment-Preserving First-order Logic Representations in Natural Language Entailment

First-order logic (FOL) can represent the logical entailment semantics of natural language (NL) sentences, but determining natural language entailment using FOL remains a challenge. To address this, we propose the Entailment-Preserving FOL representations (EPF) task and introduce reference-free evaluation metrics for EPF, the Entailment-Preserving Rate (EPR) family. In EPF, one should generate FOL representations from multi-premise natural language entailment data (e.g. EntailmentBank) so that the automatic prover's result preserves the entailment labels. Experiments show that existing methods for NL-to-FOL translation struggle in EPF. To this extent, we propose a training method specialized for the task, iterative learning-to-rank, which directly optimizes the model's EPR score through a novel scoring function and a learning-to-rank objective. Our method achieves a 1.8-2.7% improvement in EPR and a 17.4-20.6% increase in EPR@16 compared to diverse baselines in three datasets. Further analyses reveal that iterative learning-to-rank effectively suppresses the arbitrariness of FOL representation by reducing the diversity of predicate signatures, and maintains strong performance across diverse inference types and out-of-domain data.

Contrastive Visual Data Augmentation

Large multimodal models (LMMs) often struggle to recognize novel concepts, as they rely on pre-trained knowledge and have limited ability to capture subtle visual details. Domain-specific knowledge gaps in training also make them prone to confusing visually similar, commonly misrepresented, or low-resource concepts. To help LMMs better align nuanced visual features with language, improving their ability to recognize and reason about novel or rare concepts, we propose a Contrastive visual Data Augmentation (CoDA) strategy. CoDA extracts key contrastive textual and visual features of target concepts against the known concepts they are misrecognized as, and then uses multimodal generative models to produce targeted synthetic data. Automatic filtering of extracted features and augmented images is implemented to guarantee their quality, as verified by human annotators. We show the effectiveness and efficiency of CoDA on low-resource concept and diverse scene recognition datasets including INaturalist and SUN. We additionally collect NovelSpecies, a benchmark dataset consisting of newly discovered animal species that are guaranteed to be unseen by LMMs. LLaVA-1.6 1-shot updating results on these three datasets show CoDA significantly improves SOTA visual data augmentation strategies by 12.3% (NovelSpecies), 5.1% (SUN), and 6.0% (iNat) absolute gains in accuracy.

The Law of Knowledge Overshadowing: Towards Understanding, Predicting, and Preventing LLM Hallucination

Hallucination is a persistent challenge in large language models (LLMs), where even with rigorous quality control, models often generate distorted facts. This paradox, in which error generation continues despite high-quality training data, calls for a deeper understanding of the underlying LLM mechanisms. To address it, we propose a novel concept: knowledge overshadowing, where model's dominant knowledge can obscure less prominent knowledge during text generation, causing the model to fabricate inaccurate details. Building on this idea, we introduce a novel framework to quantify factual hallucinations by modeling knowledge overshadowing. Central to our approach is the log-linear law, which predicts that the rate of factual hallucination increases linearly with the logarithmic scale of (1) Knowledge Popularity, (2) Knowledge Length, and (3) Model Size. The law provides a means to preemptively quantify hallucinations, offering foresight into their occurrence even before model training or inference. Built on overshadowing effect, we propose a new decoding strategy CoDa, to mitigate hallucinations, which notably enhance model factuality on Overshadow (27.9%), MemoTrap (13.1%) and NQ-Swap (18.3%). Our findings not only deepen understandings of the underlying mechanisms behind hallucinations but also provide actionable insights for developing more predictable and controllable language models.

SMART: Self-Aware Agent for Tool Overuse Mitigation

Current Large Language Model (LLM) agents demonstrate strong reasoning and tool use capabilities, but often lack self-awareness, failing to balance these approaches effectively. This imbalance leads to Tool Overuse, where models unnecessarily rely on external tools for tasks solvable with parametric knowledge, increasing computational overhead. Inspired by human metacognition, we introduce SMART (Strategic Model-Aware Reasoning with Tools), a paradigm that enhances an agent's self-awareness to optimize task handling and reduce tool overuse. To support this paradigm, we introduce SMART-ER, a dataset spanning three domains, where reasoning alternates between parametric knowledge and tool-dependent steps, with each step enriched by rationales explaining when tools are necessary. Through supervised training, we develop SMARTAgent, a family of models that dynamically balance parametric knowledge and tool use. Evaluations show that SMARTAgent reduces tool use by 24% while improving performance by over 37%, enabling 7B-scale models to match its 70B counterpart and GPT-4o. Additionally, SMARTAgent generalizes to out-of-distribution test data like GSM8K and MINTQA, maintaining accuracy with just one-fifth the tool calls. These highlight the potential of strategic tool use to enhance reasoning, mitigate overuse, and bridge the gap between model size and performance, advancing intelligent and resource-efficient agent designs.