Externalizing Research Synthesis and Validation in AI Scientists through a Research Harness

AI systems can increasingly automate scientific workflows, but the reasoning that links prior evidence, generated ideas, experiments and final claims often remains implicit inside model inference. Here we introduce Xcientist, a research harness that externalizes research synthesis and experimental validation into inspectable, contract-governed processes. Xcientist organizes literature evidence, idea states, implementation plans, ablation records and repair traces as persistent research artifacts, so that generated mechanisms can be grounded, executed, tested and revised without losing their evidential basis. We identify claim drift as a failure mode of automated research, where runnable artifacts no longer support the mechanism originally claimed. Across training-free memory systems, graph-structured traffic forecasting and multi-scale physics-informed neural networks, Xcientist preserves traceable trajectories from problem formulation to mechanism design, validation and bounded revision. These results suggest that AI scientists should be evaluated not only by their final artifacts, but by whether their synthesis and validation processes remain attributable, inspectable and scientifically accountable.

Joint Nuclear and $\ell_1$ Regularization for Logistic Matrix Regression with Applications to Brain Imaging

We introduce a new convex optimization framework for logistic scalar-on-matrix regression which incorporates nuclear and $\ell_1$ norm penalties to enforce simultaneously low-rank and sparse structures in the estimated coefficient matrix. The proposed method enables interpretable modeling of high-dimensional matrix-valued predictors in the presence of binary responses. We derive a custom algorithm based on the Alternating Direction Method of Multipliers (ADMM) to efficiently solve the resulting convex optimization problem and establish the theoretical properties of the obtained solution. Numerical experiments clearly demonstrate the effectiveness of our method in recovering meaningful predictive patterns. Finally, we apply our method to the brain imaging data to identify structures in functional brain connectivity matrices that are characteristic of subjects with a family history of alcohol use disorders (AUDs).

XFlow: An Executable Protocol Programming System for Reliable Multi-Agent Workflows

LLM-based multi-agent systems increasingly coordinate planning, reasoning, tool use, and human interaction, yet their reliability remains limited. A central source of this limitation is the underspecified prompt--harness boundary. Current systems lack a principled way to decide which workflow commitments should remain in prompts and which should become harness structure. We present \textbf{XFlow}, an executable protocol programming system for reliable multi-agent workflows, and \textbf{XPF} (XFlow Protocol Format), its domain-specific protocol programming language. XFlow occupies a middle position between prompt-only orchestration and markup-like workflow descriptions. XPF remains readable as a literate protocol, but it is compiled and executed as a program. Its design keeps informal semantic work inside actors while moving selected commitments into harness structure that can be checked, preserved, and enforced. At runtime, XFlow stages uncertainty through lifecycle-governed symbols, which are typed state cells with validation and commit states. Actor outputs are mediated before they become shared state, instead of spreading through prompts, transcripts, or implicit memory. Our experiments cover Constrained Interaction, Long-Context Reasoning, and Agentic Software Engineering. They show that XFlow improves reliability by making constraints, evidence handling, and process requirements explicit and enforceable.

Agentic Hybrid RAG for Evidence-Grounded Muon Collider Analysis

Muon collider research spans accelerator physics, detector instrumentation, and high-energy phenomenology, with relevant evidence scattered across a rapidly expanding and heterogeneous body of scientific literature. As high-energy physics (HEP) increasingly explores agent-assisted analysis workflows, efficiently locating, integrating, and verifying scientific evidence becomes an essential capability. While retrieval-augmented generation (RAG) offers a promising framework for scientific question answering, integrating agentic reasoning without compromising retrieval precision remains a key challenge. In this work, we present agentic hybrid RAG, an evidence-grounded RAG framework for muon collider research. The framework combines a hybrid retriever, integrating sparse lexical and dense semantic retrieval, with an agentic reasoning module for query decomposition, evidence expansion, and grounded answer generation. To enable systematic evaluation, we construct the first benchmark for retrieval-augmented scientific question answering in the muon collider domain, comprising a curated literature corpus together with dedicated retrieval and answer-generation benchmarks covering major detector and physics research topics. Extensive evaluation shows that hybrid retrieval provides the strongest retrieval backbone, while agentic reasoning is most effective for controlled evidence expansion and answer synthesis. Built on this principle, agentic hybrid RAG consistently outperforms representative retrieval and RAG baselines in retrieval effectiveness, answer quality, evidence coverage, and factual grounding. Together, the benchmark and framework provide a foundation for evidence-grounded scientific question answering and future HEP analysis agents operating over large-scale scientific literature.

ABot-Earth 0.5: Generative 3D Earth Model

We present ABot-Earth 0.5, a generative 3D framework designed to synthesize vast, seamless 3D environments from ubiquitous, geospatially referenced satellite imagery. To achieve this, we propose a novel generative model formulated directly with the 3D Gaussian Splatting (3DGS) representation. The model is trained on a diverse corpus of existing real-world urban reconstructions, learning to generate realistic geometry and textures. At inference, it synthesizes novel 3D scenes conditioned solely on satellite imagery at a scalable rate of under 10 minutes per square kilometer, while demonstrating exceptional realism. The framework is designed for accessibility, with integrated hierarchical level-of-detail (LOD) structures that permit real-time, interactive visualization on web-based map engines. This high-fidelity simulation sandbox effectively mitigates the sim-to-real domain gap, enabling critical downstream Embodied AI applications like closed-loop UAV navigation. By providing an ultra-low-cost and high-efficiency solution, ABot-Earth 0.5 significantly lowers the technical and financial barriers to large-scale 3D reconstruction and empowers the future of global digital earth visualization.

DeepSurvey: Enhancing Analytical Depth and Citation Reliability in Automated Survey Generation

As scientific literature grows rapidly, automated survey generation has become a key capability for AI scientists and human researchers. However, existing systems suffer from limited analytical depth due to reliance on abstracts and isolated paper processing, and unreliable citations from imprecise retrieval and post-hoc grounding, producing superficial surveys and may mislead researchers. We present DeepSurvey, an agentic system that addresses both. To enhance depth, DeepSurvey extracts structured keynotes from full-text papers, models cross-paper relationships through clustering and comparative analysis, and integrates code-repository analysis to recover implementation-level details. To fortify reliability, it combines citation-graph expansion with hybrid filtering for topic-focussed retrieval, enforces evidence-constrained citation assignment, and deploys multi-granularity agentic refinement to validate citation-claim alignment. Experiments show that DeepSurvey achieves the highest content score (8.644/10) and citation quality (12.3% and 9.3% recall and precision gains over the strongest baseline), generalizes more robustly across domains (0.14 vs 0.22 to 0.69 CS-to-non-CS drop), and is preferred over human-written surveys by domain experts (83.3% overall quality, 100% content depth).

Dual-Latent Collaborative Decoding for Fidelity-Perception Balanced Image Compression

Learned image compression (LIC) increasingly requires reconstructions that balance distortion fidelity and perceptual realism across a wide range of bitrates. However, most existing methods still rely on a single compressed latent representation to simultaneously carry structural details, semantic cues, and perceptual priors, requiring the same latent representation to serve multiple, potentially conflicting roles. This tension becomes evident across different latent paradigms: scalar-quantized (SQ) continuous latents provide rate-scalable fidelity but tend to lose perceptual details at low rates, while vector-quantized (VQ) discrete tokens preserve compact semantic cues but suffer from limited structural fidelity and bitrate scalability. To address this issue, we propose Mixture of Decoder Experts (MoDE), a dual-latent collaborative decoding framework that decomposes reconstruction responsibilities across complementary latent paradigms. Specifically, MoDE treats the SQ branch as a fidelity-oriented expert and the VQ branch as a perception-oriented expert, and coordinates them through two decoder-side modules: Expert-Specific Enhancement (ESE), which preserves branch-specific expert references, and Cross-Expert Modulation (CEM), which enables selective complementary transfer during reconstruction. The resulting framework supports selective cross-latent collaboration under a shared dual-stream bitstream and enables both fidelity-anchored and perception-anchored decoding. Extensive experiments demonstrate that MoDE achieves a more favorable fidelity-perception balance than representative distortion-oriented, perception-oriented, generative, and dual-latent baselines across a wide bitrate range, highlighting decoder-side expert collaboration as an effective design for wide-range fidelity-perception balanced LIC.

Learning to Align Generative Appearance Priors for Fine-grained Image Retrieval

Fine-grained image retrieval (FGIR) typically relies on supervision from seen categories to learn discriminative embeddings for retrieving unseen categories. However, such supervision often biases retrieval models toward the semantics of seen categories rather than the underlying appearance characteristics that generalize across categories, thereby limiting retrieval performance on unseen categories. To tackle this, we propose GAPan, a Generative Appearance Prior alignment network that reformulates the learning objective from category prediction toward appearance modeling. Technically, GAPan treats retrieval features with an invertible density model based on normalizing flows. In the forward direction, the flow maps all instance features into a latent density space, where each seen category is modeled by a class-conditional Gaussian prior and optimized via exact likelihood estimation. This formulation preserves richer appearance details by leveraging the invertible property of the flows. In the reverse direction, samples from the high-density regions of these learned priors are mapped back to the feature space to produce appearance-aware anchors that reflect intra-category variation. These anchors supervise a prior-driven alignment objective that aligns retrieval embeddings with category-specific appearance distributions, thereby improving generalization to unseen categories. Evaluations demonstrate that our GAPan achieves state-of-the-art performance on both widely-used fine- and coarse-grained benchmarks.

Geometry-Guided Self-Supervision for Ultra-Fine-Grained Recognition with Limited Data

This paper investigates the intrinsic geometrical features of highly similar objects and introduces a general self-supervised framework called the Geometric Attribute Exploration Network (GAEor), which is designed to address the ultra-fine-grained visual categorization (Ultra-FGVC) task in data-limited scenarios. Unlike prior work that often captures subtle yet critical distinctions, GAEor generates geometric attributes as novel alternative recognition cues. These attributes are determined by various details within the object, aligned with its geometric patterns, such as the intricate vein structures in soybean leaves. Crucially, each category exhibits distinct geometric descriptors that serve as powerful cues, even among objects with minimal visual variation -- a factor largely overlooked in recent research. GAEor discovers these geometric attributes by first amplifying geometry-relevant details via visual feedback from a backbone network, then embedding the relative polar coordinates of these details into the final representation. Extensive experiments demonstrate that GAEor significantly sets new state-of-the-art records in five widely-used Ultra-FGVC benchmarks.

Divide-and-Conquer Approach to Holistic Cognition in High-Similarity Contexts with Limited Data

Ultra-fine-grained visual categorization (Ultra-FGVC) aims to classify highly similar subcategories within fine-grained objects using limited training samples. However, holistic yet discriminative cues, such as leaf contours in extremely similar cultivars, remain under-explored in current studies, thereby limiting recognition performance. Though crucial, modeling holistic cues with complex morphological structures typically requires massive training samples, posing significant challenges in data-limited scenarios. To address this challenge, we propose a novel Divide-and-Conquer Holistic Cognition Network (DHCNet) that implements a divide-and-conquer strategy by decomposing holistic cues into spatially-associated subtle discrepancies and progressively establishing the holistic cognition process, significantly simplifying holistic cognition while reducing dependency on training data. Technically, DHCNet begins by progressively analyzing subtle discrepancies, transitioning from smaller local patches to larger ones using a self-shuffling operation on local regions. Simultaneously, it leverages the unaffected local regions to potentially guide the perception of the original topological structure among the shuffled patches, thereby aiding in the establishment of spatial associations for these discrepancies. Additionally, DHCNet incorporates the online refinement of these holistic cues discovered from local regions into the training process to iteratively improve their quality. As a result, DHCNet uses these holistic cues as supervisory signals to fine-tune the parameters of the recognition model, thus improving its sensitivity to holistic cues across the entire objects. Extensive evaluations demonstrate that DHCNet achieves remarkable performance on five widely-used Ultra-FGVC datasets.