LIGM
Abstract:Annotating 3D medical images demands expert knowledge and is time-consuming. As a result, semi-supervised learning (SSL) approaches have gained significant interest in 3D medical image segmentation. The significant size differences among various organs in the human body lead to imbalanced class distribution, which is a major challenge in the real-world application of these SSL approaches. To address this issue, we develop a novel Shape Transformation driven by Active Contour (STAC), that enlarges smaller organs to alleviate imbalanced class distribution across different organs. Inspired by curve evolution theory in active contour methods, STAC employs a signed distance function (SDF) as the level set function, to implicitly represent the shape of organs, and deforms voxels in the direction of the steepest descent of SDF (i.e., the normal vector). To ensure that the voxels far from expansion organs remain unchanged, we design an SDF-based weight function to control the degree of deformation for each voxel. We then use STAC as a data-augmentation process during the training stage. Experimental results on two benchmark datasets demonstrate that the proposed method significantly outperforms some state-of-the-art methods. Source code is publicly available at https://github.com/GuGuLL123/STAC.
Abstract:Retinal image registration plays an important role in the ophthalmological diagnosis process. Since there exist variances in viewing angles and anatomical structures across different retinal images, keypoint-based approaches become the mainstream methods for retinal image registration thanks to their robustness and low latency. These methods typically assume the retinal surfaces are planar, and adopt feature matching to obtain the homography matrix that represents the global transformation between images. Yet, such a planar hypothesis inevitably introduces registration errors since retinal surface is approximately curved. This limitation is more prominent when registering image pairs with significant differences in viewing angles. To address this problem, we propose a hybrid registration framework called HybridRetina, which progressively registers retinal images with global and local deformable transformations. For that, we use a keypoint detector and a deformation network called GAMorph to estimate the global transformation and local deformable transformation, respectively. Specifically, we integrate multi-level pixel relation knowledge to guide the training of GAMorph. Additionally, we utilize an edge attention module that includes the geometric priors of the images, ensuring the deformation field focuses more on the vascular regions of clinical interest. Experiments on two widely-used datasets, FIRE and FLoRI21, show that our proposed HybridRetina significantly outperforms some state-of-the-art methods. The code is available at https://github.com/lyp-deeplearning/awesome-retinal-registration.
Abstract:Anomaly detection in chest X-rays is a critical task. Most methods mainly model the distribution of normal images, and then regard significant deviation from normal distribution as anomaly. Recently, CLIP-based methods, pre-trained on a large number of medical images, have shown impressive performance on zero/few-shot downstream tasks. In this paper, we aim to explore the potential of CLIP-based methods for anomaly detection in chest X-rays. Considering the discrepancy between the CLIP pre-training data and the task-specific data, we propose a position-guided prompt learning method. Specifically, inspired by the fact that experts diagnose chest X-rays by carefully examining distinct lung regions, we propose learnable position-guided text and image prompts to adapt the task data to the frozen pre-trained CLIP-based model. To enhance the model's discriminative capability, we propose a novel structure-preserving anomaly synthesis method within chest x-rays during the training process. Extensive experiments on three datasets demonstrate that our proposed method outperforms some state-of-the-art methods. The code of our implementation is available at https://github.com/sunzc-sunny/PPAD.
Abstract:In clinical examinations and diagnoses, low-dose computed tomography (LDCT) is crucial for minimizing health risks compared with normal-dose computed tomography (NDCT). However, reducing the radiation dose compromises the signal-to-noise ratio, leading to degraded quality of CT images. To address this, we analyze LDCT denoising task based on experimental results from the frequency perspective, and then introduce a novel self-supervised CT image denoising method called WIA-LD2ND, only using NDCT data. The proposed WIA-LD2ND comprises two modules: Wavelet-based Image Alignment (WIA) and Frequency-Aware Multi-scale Loss (FAM). First, WIA is introduced to align NDCT with LDCT by mainly adding noise to the high-frequency components, which is the main difference between LDCT and NDCT. Second, to better capture high-frequency components and detailed information, Frequency-Aware Multi-scale Loss (FAM) is proposed by effectively utilizing multi-scale feature space. Extensive experiments on two public LDCT denoising datasets demonstrate that our WIA-LD2ND, only uses NDCT, outperforms existing several state-of-the-art weakly-supervised and self-supervised methods.
Abstract:Quadrotors are increasingly used in the evolving field of aerial robotics for their agility and mechanical simplicity. However, inherent uncertainties, such as aerodynamic effects coupled with quadrotors' operation in dynamically changing environments, pose significant challenges for traditional, nominal model-based control designs. We propose a multi-task meta-learning method called Encoder-Prototype-Decoder (EPD), which has the advantage of effectively balancing shared and distinctive representations across diverse training tasks. Subsequently, we integrate the EPD model into a model predictive control problem (Proto-MPC) to enhance the quadrotor's ability to adapt and operate across a spectrum of dynamically changing tasks with an efficient online implementation. We validate the proposed method in simulations, which demonstrates Proto-MPC's robust performance in trajectory tracking of a quadrotor being subject to static and spatially varying side winds.
Abstract:Semi-supervised image segmentation has attracted great attention recently. The key is how to leverage unlabeled images in the training process. Most methods maintain consistent predictions of the unlabeled images under variations (e.g., adding noise/perturbations, or creating alternative versions) in the image and/or model level. In most image-level variation, medical images often have prior structure information, which has not been well explored. In this paper, we propose novel dual structure-preserving image filterings (DSPIF) as the image-level variations for semi-supervised medical image segmentation. Motivated by connected filtering that simplifies image via filtering in structure-aware tree-based image representation, we resort to the dual contrast invariant Max-tree and Min-tree representation. Specifically, we propose a novel connected filtering that removes topologically equivalent nodes (i.e. connected components) having no siblings in the Max/Min-tree. This results in two filtered images preserving topologically critical structure. Applying such dual structure-preserving image filterings in mutual supervision is beneficial for semi-supervised medical image segmentation. Extensive experimental results on three benchmark datasets demonstrate that the proposed method significantly/consistently outperforms some state-of-the-art methods. The source codes will be publicly available.
Abstract:Perception, Planning, and Control form the essential components of autonomy in advanced air mobility. This work advances the holistic integration of these components to enhance the performance and robustness of the complete cyber-physical system. We adapt Perception Simplex, a system for verifiable collision avoidance amidst obstacle detection faults, to the vertical landing maneuver for autonomous air mobility vehicles. We improve upon this system by replacing static assumptions of control capabilities with dynamic confirmation, i.e., real-time confirmation of control limitations of the system, ensuring reliable fulfillment of safety maneuvers and overrides, without dependence on overly pessimistic assumptions. Parameters defining control system capabilities and limitations, e.g., maximum deceleration, are continuously tracked within the system and used to make safety-critical decisions. We apply these techniques to propose a verifiable collision avoidance solution for autonomous aerial mobility vehicles operating in cluttered and potentially unsafe environments.
Abstract:Purely data-driven deep neural networks (DNNs) applied to physical engineering systems can infer relations that violate physics laws, thus leading to unexpected consequences. To address this challenge, we propose a physics-model-based DNN framework, called Phy-Taylor, that accelerates learning compliant representations with physical knowledge. The Phy-Taylor framework makes two key contributions; it introduces a new architectural Physics-compatible neural network (PhN), and features a novel compliance mechanism, we call {\em Physics-guided Neural Network Editing\/}. The PhN aims to directly capture nonlinearities inspired by physical quantities, such as kinetic energy, potential energy, electrical power, and aerodynamic drag force. To do so, the PhN augments neural network layers with two key components: (i) monomials of Taylor series expansion of nonlinear functions capturing physical knowledge, and (ii) a suppressor for mitigating the influence of noise. The neural-network editing mechanism further modifies network links and activation functions consistently with physical knowledge. As an extension, we also propose a self-correcting Phy-Taylor framework that introduces two additional capabilities: (i) physics-model-based safety relationship learning, and (ii) automatic output correction when violations of safety occur. Through experiments, we show that (by expressing hard-to-learn nonlinearities directly and by constraining dependencies) Phy-Taylor features considerably fewer parameters, and a remarkably accelerated training process, while offering enhanced model robustness and accuracy.