MMBU: A Massive Multi-modal Biomedical Understanding Benchmark to Probe the Perception Capabilities of Vision-Language Models

Vision and language models (VLMs) hold immense promise to transform biomedical imaging workflows, from detecting lesions in chest X-rays to profiling cellular features in microscopy. Realizing this potential, however, requires robust and fine-grained visual perception. Models need to correctly interpret subtle features in images, and they must do so across diverse biomedical modalities, scales, and contexts. Nevertheless, current benchmarks remain limited. To address these gaps, we introduce the Massive Multimodal Biomedical Understanding (MMBU) benchmark. It is the largest biomedical vision and language benchmark to date, covering 35 submodalities with rich structured metadata. It includes both open and closed versions of ungrounded classification, grounded classification, and object detection, enabling systematic evaluation of model performance across biological scales, clinical settings, and imaging modalities. Evaluating 15 open-weight and 2 frontier VLMs, we find that while medical adaptation provides measurable gains for some models, the high accuracy often reported on established benchmarks can mask deficiencies in visual perception and domain generalization.

ProSPy: A Profiling-Driven SQL-Python Agentic Framework for Enterprise Text-to-SQL

Large language models have substantially advanced Text-to-SQL systems, yet applying them to enterprise-scale databases remains challenging. Real-world databases often contain large and heterogeneous schemas, incomplete metadata, dialect-specific SQL syntax, and complex analytical questions that are difficult to solve with a single SQL query. To address these challenges, we propose ProSPy, a Profiling-driven SQL--Python agentic framework for enterprise-scale Text-to-SQL. ProSPy structures the reasoning process into four stages: it first extracts fine-grained data evidence through automatic profiling, progressively prunes large schemas into task-relevant contexts, fetches intermediate views through a dialect-agnostic SQL interface, and finally performs flexible downstream analysis with Python. This design combines the efficiency of SQL over large databases with the flexibility of Python-based analysis, while reducing reliance on unreliable metadata and improving robustness across SQL dialects. Experiments on Spider 2.0-Lite and Spider 2.0-Snow show that ProSPy consistently outperforms strong baselines with both open-source and proprietary models, achieving execution accuracies of 60.15% and 60.51% with Claude-4.5-Opus, without majority voting. Further analysis shows that ProSPy is robust to SQL dialect variations and achieves a favorable trade-off between schema recall and precision.

EviLink: Multi-Path Schema Linking with Uncertainty-Guided Evidence Acquisition for Large-Scale Text-to-SQL

Schema linking is a difficult and important step in large-scale Text-to-SQL, where systems must identify a compact yet sufficient schema context from large and ambiguous databases. Existing methods often treat schema linking as deterministic selection around a single SQL path, but complex questions may admit multiple valid realizations with different schema needs. We reframe schema linking as uncertainty-aware schema-need inference over multiple plausible SQL paths, where the system distinguishes required schema items from path-dependent uncertain ones and acquires evidence only where needed. We instantiate this reframing with EviLink, which combines multi-hypothesis schema grounding with uncertainty-guided evidence acquisition. Experiments on BIRD-Dev and Spider2-Snow show that this perspective improves the balance among schema completeness, schema relevance, and token cost. On Spider2-Snow, EviLink achieves 90.15% field-level strict recall rate, uses 123.30K average tokens, and improves downstream SQL generation under a fixed generator.

Human-AI Collaboration in Science at Scale: A Global Large-scale Randomized Field Experiment

Collaboration is the defining mode of modern science, yet its core mechanism -- feedback -- remains hard to observe, difficult to scale, and unequally distributed. Here we test whether large language models (LLMs) can contribute to this hidden but vital practice and reallocate scientific feedback, an essential yet scarce resource for knowledge production. In a global large-scale randomized field experiment, we delivered customized LLM-generated feedback for over 31,000 arXiv preprints across 150 fields and more than 45,000 researchers from 133 geographic regions. Relative to controls, authors who received feedback had a significantly higher likelihood of revising their manuscripts, corresponding to a 12.55% relative increase over the baseline revision rate. Exposure to AI feedback also increased authors' subsequent use of LLM tools in their future papers, suggesting longer-run shifts in scientific practice. These effects were strongest among authors from non-English-dominant research regions, manuscripts less embedded in the scholarly literature, and teams with lower h-indexes and earlier career stages, consistent with the idea that AI feedback may provide the greatest benefit where access to timely critique is otherwise limited. Together, these findings provide causal evidence that structured AI-based interventions can transform access to scientific feedback from a largely private advantage into a more widely distributed resource, with broader implications for productivity, equity, and capacity across the global research system.

V-GRPO: Online Reinforcement Learning for Denoising Generative Models Is Easier than You Think

Aligning denoising generative models with human preferences or verifiable rewards remains a key challenge. While policy-gradient online reinforcement learning (RL) offers a principled post-training framework, its direct application is hindered by the intractable likelihoods of these models. Prior work therefore either optimizes an induced Markov decision process (MDP) over sampling trajectories, which is stable but inefficient, or uses likelihood surrogates based on the diffusion evidence lower bound (ELBO), which have so far underperformed on visual generation. Our key insight is that the ELBO-based approach can, in fact, be made both stable and efficient. By reducing surrogate variance and controlling gradient steps, we show that this approach can beat MDP-based methods. To this end, we introduce Variational GRPO (V-GRPO), a method that integrates ELBO-based surrogates with the Group Relative Policy Optimization (GRPO) algorithm, alongside a set of simple yet essential techniques. Our method is easy to implement, aligns with pretraining objectives, and avoids the limitations of MDP-based methods. V-GRPO achieves state-of-the-art performance in text-to-image synthesis, while delivering a $2\times$ speedup over MixGRPO and a $3\times$ speedup over DiffusionNFT.

Project Imaging-X: A Survey of 1000+ Open-Access Medical Imaging Datasets for Foundation Model Development

Foundation models have demonstrated remarkable success across diverse domains and tasks, primarily due to the thrive of large-scale, diverse, and high-quality datasets. However, in the field of medical imaging, the curation and assembling of such medical datasets are highly challenging due to the reliance on clinical expertise and strict ethical and privacy constraints, resulting in a scarcity of large-scale unified medical datasets and hindering the development of powerful medical foundation models. In this work, we present the largest survey to date of medical image datasets, covering over 1,000 open-access datasets with a systematic catalog of their modalities, tasks, anatomies, annotations, limitations, and potential for integration. Our analysis exposes a landscape that is modest in scale, fragmented across narrowly scoped tasks, and unevenly distributed across organs and modalities, which in turn limits the utility of existing medical image datasets for developing versatile and robust medical foundation models. To turn fragmentation into scale, we propose a metadata-driven fusion paradigm (MDFP) that integrates public datasets with shared modalities or tasks, thereby transforming multiple small data silos into larger, more coherent resources. Building on MDFP, we release an interactive discovery portal that enables end-to-end, automated medical image dataset integration, and compile all surveyed datasets into a unified, structured table that clearly summarizes their key characteristics and provides reference links, offering the community an accessible and comprehensive repository. By charting the current terrain and offering a principled path to dataset consolidation, our survey provides a practical roadmap for scaling medical imaging corpora, supporting faster data discovery, more principled dataset creation, and more capable medical foundation models.

CellFluxRL: Biologically-Constrained Virtual Cell Modeling via Reinforcement Learning

Building virtual cells with generative models to simulate cellular behavior in silico is emerging as a promising paradigm for accelerating drug discovery. However, prior image-based generative approaches can produce implausible cell images that violate basic physical and biological constraints. To address this, we propose to post-train virtual cell models with reinforcement learning (RL), leveraging biologically meaningful evaluators as reward functions. We design seven rewards spanning three categories-biological function, structural validity, and morphological correctness-and optimize the state-of-the-art CellFlux model to yield CellFluxRL. CellFluxRL consistently improves over CellFlux across all rewards, with further performance boosts from test-time scaling. Overall, our results present a virtual cell modeling framework that enforces physically-based constraints through RL, advancing beyond "visually realistic" generations towards "biologically meaningful" ones.

Uncertainty Quantification for Distribution-to-Distribution Flow Matching in Scientific Imaging

Distribution-to-distribution generative models support scientific imaging tasks ranging from modeling cellular perturbation responses to translating medical images across conditions. Trustworthy generation requires both reliability (generalization across labs, devices, and experimental conditions) and accountability (detecting out-of-distribution cases where predictions may be unreliable). Uncertainty quantification (UQ) based approaches serve as promising candidates for these tasks, yet UQ for distribution-to-distribution generative models remains underexplored. We present a unified UQ framework, Bayesian Stochastic Flow Matching (BSFM), that disentangles aleatoric and epistemic uncertainty. The Stochastic Flow Matching (SFM) component augments deterministic flows with a diffusion term to improve model generalization to unseen scenarios. For UQ, we develop a scalable Bayesian approach -- MCD-Antithetic -- that combines Monte Carlo Dropout with sample-efficient antithetic sampling to produce effective anomaly scores for out-of-distribution detection. Experiments on cellular imaging (BBBC021, JUMP) and brain fMRI (Theory of Mind) across diverse scenarios show that SFM improves reliability while MCD-Antithetic enhances accountability.

Fine-tuning MLLMs Without Forgetting Is Easier Than You Think

The paper demonstrate that simple adjustments of the fine-tuning recipes of multimodal large language models (MLLM) are sufficient to mitigate catastrophic forgetting. On visual question answering, we design a 2x2 experimental framework to assess model performance across in-distribution and out-of-distribution image and text inputs. Our results show that appropriate regularization, such as constraining the number of trainable parameters or adopting a low learning rate, effectively prevents forgetting when dealing with out-of-distribution images. However, we uncover a distinct form of forgetting in settings with in-distribution images and out-of-distribution text. We attribute this forgetting as task-specific overfitting and address this issue by introducing a data-hybrid training strategy that combines datasets and tasks. Finally, we demonstrate that this approach naturally extends to continual learning, outperforming existing methods with complex auxiliary mechanisms. In general, our findings challenge the prevailing assumptions by highlighting the inherent robustness of MLLMs and providing practical guidelines for adapting them while preserving their general capabilities.

Tool Verification for Test-Time Reinforcement Learning

Test-time reinforcement learning (TTRL) has emerged as a promising paradigm for self-evolving large reasoning models (LRMs), enabling online adaptation on unlabeled test inputs via self-induced rewards through majority voting. However, a spurious yet high-frequency unverified consensus can become a biased and reinforced reward signal, leading to incorrect mode collapse. We address this failure mode with T^3RL (Tool-Verification for Test-Time Reinforcement Learning), which introduces test-time tool verification into reward estimation. Concretely, a verifier uses an external tool as evidence (e.g., from code execution) to upweight verified rollouts in a verification-aware voting, producing more reliable pseudo-labels for training. Across various math difficulties (MATH-500, AMC, and AIME 2024) and diverse backbone types, T^3RL significantly improves over TTRL, with larger gains on harder problems. More broadly, T^3RL can be viewed as verified online data synthesis, highlighting test-time tool verification as a key mechanism for stabilizing self-evolution.