Abstract:Neural Radiance Fields (NeRFs) are trained to minimize the rendering loss of predicted viewpoints. However, the photometric loss often does not provide enough information to disambiguate between different possible geometries yielding the same image. Previous work has thus incorporated depth supervision during NeRF training, leveraging dense predictions from pre-trained depth networks as pseudo-ground truth. While these depth priors are assumed to be perfect once filtered for noise, in practice, their accuracy is more challenging to capture. This work proposes a novel approach to uncertainty in depth priors for NeRF supervision. Instead of using custom-trained depth or uncertainty priors, we use off-the-shelf pretrained diffusion models to predict depth and capture uncertainty during the denoising process. Because we know that depth priors are prone to errors, we propose to supervise the ray termination distance distribution with Earth Mover's Distance instead of enforcing the rendered depth to replicate the depth prior exactly through L2-loss. Our depth-guided NeRF outperforms all baselines on standard depth metrics by a large margin while maintaining performance on photometric measures.
Abstract:Colorectal cancer remains one of the deadliest cancers in the world. In recent years computer-aided methods have aimed to enhance cancer screening and improve the quality and availability of colonoscopies by automatizing sub-tasks. One such task is predicting depth from monocular video frames, which can assist endoscopic navigation. As ground truth depth from standard in-vivo colonoscopy remains unobtainable due to hardware constraints, two approaches have aimed to circumvent the need for real training data: supervised methods trained on labeled synthetic data and self-supervised models trained on unlabeled real data. However, self-supervised methods depend on unreliable loss functions that struggle with edges, self-occlusion, and lighting inconsistency. Methods trained on synthetic data can provide accurate depth for synthetic geometries but do not use any geometric supervisory signal from real data and overfit to synthetic anatomies and properties. This work proposes a novel approach to leverage labeled synthetic and unlabeled real data. While previous domain adaptation methods indiscriminately enforce the distributions of both input data modalities to coincide, we focus on the end task, depth prediction, and translate only essential information between the input domains. Our approach results in more resilient and accurate depth maps of real colonoscopy sequences.
Abstract:Colorectal cancer is one of the most common cancers in the world. While colonoscopy is an effective screening technique, navigating an endoscope through the colon to detect polyps is challenging. A 3D map of the observed surfaces could enhance the identification of unscreened colon tissue and serve as a training platform. However, reconstructing the colon from video footage remains unsolved due to numerous factors such as self-occlusion, reflective surfaces, lack of texture, and tissue deformation that limit feature-based methods. Learning-based approaches hold promise as robust alternatives, but necessitate extensive datasets. By establishing a benchmark, the 2022 EndoVis sub-challenge SimCol3D aimed to facilitate data-driven depth and pose prediction during colonoscopy. The challenge was hosted as part of MICCAI 2022 in Singapore. Six teams from around the world and representatives from academia and industry participated in the three sub-challenges: synthetic depth prediction, synthetic pose prediction, and real pose prediction. This paper describes the challenge, the submitted methods, and their results. We show that depth prediction in virtual colonoscopy is robustly solvable, while pose estimation remains an open research question.
Abstract:Deducing the 3D structure of endoscopic scenes from images remains extremely challenging. In addition to deformation and view-dependent lighting, tubular structures like the colon present problems stemming from the self-occluding, repetitive anatomical structures. In this paper, we propose SimCol, a synthetic dataset for camera pose estimation in colonoscopy and a novel method that explicitly learns a bimodal distribution to predict the endoscope pose. Our dataset replicates real colonoscope motion and highlights drawbacks of existing methods. We publish 18k RGB images from simulated colonoscopy with corresponding depth and camera poses and make our data generation environment in Unity publicly available. We evaluate different camera pose prediction methods and demonstrate that, when trained on our data, they generalize to real colonoscopy sequences and our bimodal approach outperforms prior unimodal work.
Abstract:To what extent are two images picturing the same 3D surfaces? Even when this is a known scene, the answer typically requires an expensive search across scale space, with matching and geometric verification of large sets of local features. This expense is further multiplied when a query image is evaluated against a gallery, e.g. in visual relocalization. While we don't obviate the need for geometric verification, we propose an interpretable image-embedding that cuts the search in scale space to essentially a lookup. Our approach measures the asymmetric relation between two images. The model then learns a scene-specific measure of similarity, from training examples with known 3D visible-surface overlaps. The result is that we can quickly identify, for example, which test image is a close-up version of another, and by what scale factor. Subsequently, local features need only be detected at that scale. We validate our scene-specific model by showing how this embedding yields competitive image-matching results, while being simpler, faster, and also interpretable by humans.