BIOMEDICA: An Open Biomedical Image-Caption Archive, Dataset, and Vision-Language Models Derived from Scientific Literature

The development of vision-language models (VLMs) is driven by large-scale and diverse multimodal datasets. However, progress toward generalist biomedical VLMs is limited by the lack of annotated, publicly accessible datasets across biology and medicine. Existing efforts are restricted to narrow domains, missing the full diversity of biomedical knowledge encoded in scientific literature. To address this gap, we introduce BIOMEDICA, a scalable, open-source framework to extract, annotate, and serialize the entirety of the PubMed Central Open Access subset into an easy-to-use, publicly accessible dataset. Our framework produces a comprehensive archive with over 24 million unique image-text pairs from over 6 million articles. Metadata and expert-guided annotations are also provided. We demonstrate the utility and accessibility of our resource by releasing BMCA-CLIP, a suite of CLIP-style models continuously pre-trained on the BIOMEDICA dataset via streaming, eliminating the need to download 27 TB of data locally. On average, our models achieve state-of-the-art performance across 40 tasks - spanning pathology, radiology, ophthalmology, dermatology, surgery, molecular biology, parasitology, and cell biology - excelling in zero-shot classification with a 6.56% average improvement (as high as 29.8% and 17.5% in dermatology and ophthalmology, respectively), and stronger image-text retrieval, all while using 10x less compute. To foster reproducibility and collaboration, we release our codebase and dataset for the broader research community.

Automated Generation of Challenging Multiple-Choice Questions for Vision Language Model Evaluation

The rapid development of vision language models (VLMs) demands rigorous and reliable evaluation. However, current visual question answering (VQA) benchmarks often depend on open-ended questions, making accurate evaluation difficult due to the variability in natural language responses. To address this, we introduce AutoConverter, an agentic framework that automatically converts these open-ended questions into multiple-choice format, enabling objective evaluation while reducing the costly question creation process. Our experiments demonstrate that AutoConverter can generate correct and challenging multiple-choice questions, with VLMs demonstrating consistently similar or lower accuracy on these questions compared to human-created ones. Using AutoConverter, we construct VMCBench, a benchmark created by transforming 20 existing VQA datasets into a unified multiple-choice format, totaling 9,018 questions. We comprehensively evaluate 33 state-of-the-art VLMs on VMCBench, setting a new standard for scalable, consistent, and reproducible VLM evaluation.

DeepSeek-V3 Technical Report

We present DeepSeek-V3, a strong Mixture-of-Experts (MoE) language model with 671B total parameters with 37B activated for each token. To achieve efficient inference and cost-effective training, DeepSeek-V3 adopts Multi-head Latent Attention (MLA) and DeepSeekMoE architectures, which were thoroughly validated in DeepSeek-V2. Furthermore, DeepSeek-V3 pioneers an auxiliary-loss-free strategy for load balancing and sets a multi-token prediction training objective for stronger performance. We pre-train DeepSeek-V3 on 14.8 trillion diverse and high-quality tokens, followed by Supervised Fine-Tuning and Reinforcement Learning stages to fully harness its capabilities. Comprehensive evaluations reveal that DeepSeek-V3 outperforms other open-source models and achieves performance comparable to leading closed-source models. Despite its excellent performance, DeepSeek-V3 requires only 2.788M H800 GPU hours for its full training. In addition, its training process is remarkably stable. Throughout the entire training process, we did not experience any irrecoverable loss spikes or perform any rollbacks. The model checkpoints are available at https://github.com/deepseek-ai/DeepSeek-V3.

Feather the Throttle: Revisiting Visual Token Pruning for Vision-Language Model Acceleration

Recent works on accelerating Vision-Language Models show that strong performance can be maintained across a variety of vision-language tasks despite highly compressing visual information. In this work, we examine the popular acceleration approach of early pruning of visual tokens inside the language model and find that its strong performance across many tasks is not due to an exceptional ability to compress visual information, but rather the benchmarks' limited ability to assess fine-grained visual capabilities. Namely, we demonstrate a core issue with the acceleration approach where most tokens towards the top of the image are pruned away. Yet, this issue is only reflected in performance for a small subset of tasks such as localization. For the other evaluated tasks, strong performance is maintained with the flawed pruning strategy. Noting the limited visual capabilities of the studied acceleration technique, we propose FEATHER (Fast and Effective Acceleration wiTH Ensemble cRiteria), a straightforward approach that (1) resolves the identified issue with early-layer pruning, (2) incorporates uniform sampling to ensure coverage across all image regions, and (3) applies pruning in two stages to allow the criteria to become more effective at a later layer while still achieving significant speedup through early-layer pruning. With comparable computational savings, we find that FEATHER has more than $5\times$ performance improvement on the vision-centric localization benchmarks compared to the original acceleration approach.

Apollo: An Exploration of Video Understanding in Large Multimodal Models

Despite the rapid integration of video perception capabilities into Large Multimodal Models (LMMs), the underlying mechanisms driving their video understanding remain poorly understood. Consequently, many design decisions in this domain are made without proper justification or analysis. The high computational cost of training and evaluating such models, coupled with limited open research, hinders the development of video-LMMs. To address this, we present a comprehensive study that helps uncover what effectively drives video understanding in LMMs. We begin by critically examining the primary contributors to the high computational requirements associated with video-LMM research and discover Scaling Consistency, wherein design and training decisions made on smaller models and datasets (up to a critical size) effectively transfer to larger models. Leveraging these insights, we explored many video-specific aspects of video-LMMs, including video sampling, architectures, data composition, training schedules, and more. For example, we demonstrated that fps sampling during training is vastly preferable to uniform frame sampling and which vision encoders are the best for video representation. Guided by these findings, we introduce Apollo, a state-of-the-art family of LMMs that achieve superior performance across different model sizes. Our models can perceive hour-long videos efficiently, with Apollo-3B outperforming most existing $7$B models with an impressive 55.1 on LongVideoBench. Apollo-7B is state-of-the-art compared to 7B LMMs with a 70.9 on MLVU, and 63.3 on Video-MME.

Targeted Learning for Variable Importance

Variable importance is one of the most widely used measures for interpreting machine learning with significant interest from both statistics and machine learning communities. Recently, increasing attention has been directed toward uncertainty quantification in these metrics. Current approaches largely rely on one-step procedures, which, while asymptotically efficient, can present higher sensitivity and instability in finite sample settings. To address these limitations, we propose a novel method by employing the targeted learning (TL) framework, designed to enhance robustness in inference for variable importance metrics. Our approach is particularly suited for conditional permutation variable importance. We show that it (i) retains the asymptotic efficiency of traditional methods, (ii) maintains comparable computational complexity, and (iii) delivers improved accuracy, especially in finite sample contexts. We further support these findings with numerical experiments that illustrate the practical advantages of our method and validate the theoretical results.

Zero-shot Action Localization via the Confidence of Large Vision-Language Models

Precise action localization in untrimmed video is vital for fields such as professional sports and minimally invasive surgery, where the delineation of particular motions in recordings can dramatically enhance analysis. But in many cases, large scale datasets with video-label pairs for localization are unavailable, limiting the opportunity to fine-tune video-understanding models. Recent developments in large vision-language models (LVLM) address this need with impressive zero-shot capabilities in a variety of video understanding tasks. However, the adaptation of image-based LVLMs, with their powerful visual question answering capabilities, to action localization in long-form video is still relatively unexplored. To this end, we introduce a true ZEro-shot Action Localization method (ZEAL). Specifically, we leverage the built-in action knowledge of a large language model (LLM) to inflate actions into highly-detailed descriptions of the archetypal start and end of the action. These descriptions serve as queries to LVLM for generating frame-level confidence scores which can be aggregated to produce localization outputs. The simplicity and flexibility of our method lends it amenable to more capable LVLMs as they are developed, and we demonstrate remarkable results in zero-shot action localization on a challenging benchmark, without any training.

Innovative Thinking, Infinite Humor: Humor Research of Large Language Models through Structured Thought Leaps

Humor is a culturally nuanced aspect of human language that presents challenges for understanding and generation, requiring participants to possess good creativity and strong associative thinking. Similar to reasoning tasks like solving math problems, humor generation requires continuous reflection and revision to foster creative thinking, rather than relying on a sudden flash of inspiration like Creative Leap-of-Thought (CLoT) paradigm. Although CLoT can realize the ability of remote association generation, this paradigm fails to generate humor content. Therefore, in this paper, we propose a systematic way of thinking about generating humor and based on it, we built Creative Leap of Structured Thought (CLoST) frame. First, a reward model is necessary achieve the purpose of being able to correct errors, since there is currently no expert model of humor and a usable rule to determine whether a piece of content is humorous. Judgement-oriented instructions are designed to improve the capability of a model, and we also propose an open-domain instruction evolutionary method to fully unleash the potential. Then, through reinforcement learning, the model learns to hone its rationales of the thought chain and refine the strategies it uses. Thus, it learns to recognize and correct its mistakes, and finally generate the most humorous and creative answer. These findings deepen our understanding of the creative capabilities of LLMs and provide ways to enhance LLMs' creative abilities for cross-domain innovative applications.

RuleAlign: Making Large Language Models Better Physicians with Diagnostic Rule Alignment

Large Language Models (LLMs) like GPT-4, MedPaLM-2, and Med-Gemini achieve performance competitively with human experts across various medical benchmarks. However, they still face challenges in making professional diagnoses akin to physicians, particularly in efficiently gathering patient information and reasoning the final diagnosis. To this end, we introduce the RuleAlign framework, designed to align LLMs with specific diagnostic rules. We develop a medical dialogue dataset comprising rule-based communications between patients and physicians and design an alignment learning approach through preference learning. Experimental results demonstrate the effectiveness of the proposed approach. We hope that our work can serve as an inspiration for exploring the potential of LLMs as AI physicians.

MetaTool: Facilitating Large Language Models to Master Tools with Meta-task Augmentation

Utilizing complex tools with Large Language Models (LLMs) is a critical component for grounding AI agents in various real-world scenarios. The core challenge of manipulating tools lies in understanding their usage and functionality. The prevailing approach involves few-shot prompting with demonstrations or fine-tuning on expert trajectories. However, for complex tools and tasks, mere in-context demonstrations may fail to cover sufficient knowledge. Training-based methods are also constrained by the high cost of dataset construction and limited generalizability. In this paper, we introduce a new tool learning methodology (MetaTool) that is generalizable for mastering any reusable toolset. Our approach includes a self-supervised data augmentation technique that enables LLMs to gain a comprehensive understanding of various tools, thereby improving their ability to complete tasks effectively. We develop a series of meta-tasks that involve predicting masked factors of tool execution. These self-supervised tasks enable the automatic generation of high-quality QA data concerning tool comprehension. By incorporating meta-task data into the instruction tuning process, the proposed MetaTool model achieves significant superiority to open-source models and is comparable to GPT-4/GPT-3.5 on multiple tool-oriented tasks.