BrainMRDiff: A Diffusion Model for Anatomically Consistent Brain MRI Synthesis

Accurate brain tumor diagnosis relies on the assessment of multiple Magnetic Resonance Imaging (MRI) sequences. However, in clinical practice, the acquisition of certain sequences may be affected by factors like motion artifacts or contrast agent contraindications, leading to suboptimal outcome, such as poor image quality. This can then affect image interpretation by radiologists. Synthesizing high quality MRI sequences has thus become a critical research focus. Though recent advancements in controllable generative AI have facilitated the synthesis of diagnostic quality MRI, ensuring anatomical accuracy remains a significant challenge. Preserving critical structural relationships between different anatomical regions is essential, as even minor structural or topological inconsistencies can compromise diagnostic validity. In this work, we propose BrainMRDiff, a novel topology-preserving, anatomy-guided diffusion model for synthesizing brain MRI, leveraging brain and tumor anatomies as conditioning inputs. To achieve this, we introduce two key modules: Tumor+Structure Aggregation (TSA) and Topology-Guided Anatomy Preservation (TGAP). TSA integrates diverse anatomical structures with tumor information, forming a comprehensive conditioning mechanism for the diffusion process. TGAP enforces topological consistency during reverse denoising diffusion process; both these modules ensure that the generated image respects anatomical integrity. Experimental results demonstrate that BrainMRDiff surpasses existing baselines, achieving performance improvements of 23.33% on the BraTS-AG dataset and 33.33% on the BraTS-Met dataset. Code will be made publicly available soon.

RF-BayesPhysNet: A Bayesian rPPG Uncertainty Estimation Method for Complex Scenarios

Remote photoplethysmography (rPPG) technology infers heart rate by capturing subtle color changes in facial skin using a camera, demonstrating great potential in non-contact heart rate measurement. However, measurement accuracy significantly decreases in complex scenarios such as lighting changes and head movements compared to ideal laboratory conditions. Existing deep learning models often neglect the quantification of measurement uncertainty, limiting their credibility in dynamic scenes. To address the issue of insufficient rPPG measurement reliability in complex scenarios, this paper introduces Bayesian neural networks to the rPPG field for the first time, proposing the Robust Fusion Bayesian Physiological Network (RF-BayesPhysNet), which can model both aleatoric and epistemic uncertainty. It leverages variational inference to balance accuracy and computational efficiency. Due to the current lack of uncertainty estimation metrics in the rPPG field, this paper also proposes a new set of methods, using Spearman correlation coefficient, prediction interval coverage, and confidence interval width, to measure the effectiveness of uncertainty estimation methods under different noise conditions. Experiments show that the model, with only double the parameters compared to traditional network models, achieves a MAE of 2.56 on the UBFC-RPPG dataset, surpassing most models. It demonstrates good uncertainty estimation capability in no-noise and low-noise conditions, providing prediction confidence and significantly enhancing robustness in real-world applications. We have open-sourced the code at https://github.com/AIDC-rPPG/RF-Net

Learning Bijective Surface Parameterization for Inferring Signed Distance Functions from Sparse Point Clouds with Grid Deformation

Inferring signed distance functions (SDFs) from sparse point clouds remains a challenge in surface reconstruction. The key lies in the lack of detailed geometric information in sparse point clouds, which is essential for learning a continuous field. To resolve this issue, we present a novel approach that learns a dynamic deformation network to predict SDFs in an end-to-end manner. To parameterize a continuous surface from sparse points, we propose a bijective surface parameterization (BSP) that learns the global shape from local patches. Specifically, we construct a bijective mapping for sparse points from the parametric domain to 3D local patches, integrating patches into the global surface. Meanwhile, we introduce grid deformation optimization (GDO) into the surface approximation to optimize the deformation of grid points and further refine the parametric surfaces. Experimental results on synthetic and real scanned datasets demonstrate that our method significantly outperforms the current state-of-the-art methods. Project page: https://takeshie.github.io/Bijective-SDF

Sharpening Neural Implicit Functions with Frequency Consolidation Priors

Signed Distance Functions (SDFs) are vital implicit representations to represent high fidelity 3D surfaces. Current methods mainly leverage a neural network to learn an SDF from various supervisions including signed distances, 3D point clouds, or multi-view images. However, due to various reasons including the bias of neural network on low frequency content, 3D unaware sampling, sparsity in point clouds, or low resolutions of images, neural implicit representations still struggle to represent geometries with high frequency components like sharp structures, especially for the ones learned from images or point clouds. To overcome this challenge, we introduce a method to sharpen a low frequency SDF observation by recovering its high frequency components, pursuing a sharper and more complete surface. Our key idea is to learn a mapping from a low frequency observation to a full frequency coverage in a data-driven manner, leading to a prior knowledge of shape consolidation in the frequency domain, dubbed frequency consolidation priors. To better generalize a learned prior to unseen shapes, we introduce to represent frequency components as embeddings and disentangle the embedding of the low frequency component from the embedding of the full frequency component. This disentanglement allows the prior to generalize on an unseen low frequency observation by simply recovering its full frequency embedding through a test-time self-reconstruction. Our evaluations under widely used benchmarks or real scenes show that our method can recover high frequency component and produce more accurate surfaces than the latest methods. The code, data, and pre-trained models are available at \url{https://github.com/chenchao15/FCP}.

Efficient Event-based Semantic Segmentation with Spike-driven Lightweight Transformer-based Networks

Event-based semantic segmentation has great potential in autonomous driving and robotics due to the advantages of event cameras, such as high dynamic range, low latency, and low power cost. Unfortunately, current artificial neural network (ANN)-based segmentation methods suffer from high computational demands, the requirements for image frames, and massive energy consumption, limiting their efficiency and application on resource-constrained edge/mobile platforms. To address these problems, we introduce SLTNet, a spike-driven lightweight transformer-based network designed for event-based semantic segmentation. Specifically, SLTNet is built on efficient spike-driven convolution blocks (SCBs) to extract rich semantic features while reducing the model's parameters. Then, to enhance the long-range contextural feature interaction, we propose novel spike-driven transformer blocks (STBs) with binary mask operations. Based on these basic blocks, SLTNet employs a high-efficiency single-branch architecture while maintaining the low energy consumption of the Spiking Neural Network (SNN). Finally, extensive experiments on DDD17 and DSEC-Semantic datasets demonstrate that SLTNet outperforms state-of-the-art (SOTA) SNN-based methods by at least 7.30% and 3.30% mIoU, respectively, with extremely 5.48x lower energy consumption and 1.14x faster inference speed.

ROUTE: Robust Multitask Tuning and Collaboration for Text-to-SQL

Despite the significant advancements in Text-to-SQL (Text2SQL) facilitated by large language models (LLMs), the latest state-of-the-art techniques are still trapped in the in-context learning of closed-source LLMs (e.g., GPT-4), which limits their applicability in open scenarios. To address this challenge, we propose a novel RObust mUltitask Tuning and collaboration mEthod (ROUTE) to improve the comprehensive capabilities of open-source LLMs for Text2SQL, thereby providing a more practical solution. Our approach begins with multi-task supervised fine-tuning (SFT) using various synthetic training data related to SQL generation. Unlike existing SFT-based Text2SQL methods, we introduced several additional SFT tasks, including schema linking, noise correction, and continuation writing. Engaging in a variety of SQL generation tasks enhances the model's understanding of SQL syntax and improves its ability to generate high-quality SQL queries. Additionally, inspired by the collaborative modes of LLM agents, we introduce a Multitask Collaboration Prompting (MCP) strategy. This strategy leverages collaboration across several SQL-related tasks to reduce hallucinations during SQL generation, thereby maximizing the potential of enhancing Text2SQL performance through explicit multitask capabilities. Extensive experiments and in-depth analyses have been performed on eight open-source LLMs and five widely-used benchmarks. The results demonstrate that our proposal outperforms the latest Text2SQL methods and yields leading performance.

TopoCellGen: Generating Histopathology Cell Topology with a Diffusion Model

Accurately modeling multi-class cell topology is crucial in digital pathology, as it provides critical insights into tissue structure and pathology. The synthetic generation of cell topology enables realistic simulations of complex tissue environments, enhances downstream tasks by augmenting training data, aligns more closely with pathologists' domain knowledge, and offers new opportunities for controlling and generalizing the tumor microenvironment. In this paper, we propose a novel approach that integrates topological constraints into a diffusion model to improve the generation of realistic, contextually accurate cell topologies. Our method refines the simulation of cell distributions and interactions, increasing the precision and interpretability of results in downstream tasks such as cell detection and classification. To assess the topological fidelity of generated layouts, we introduce a new metric, Topological Frechet Distance (TopoFD), which overcomes the limitations of traditional metrics like FID in evaluating topological structure. Experimental results demonstrate the effectiveness of our approach in generating multi-class cell layouts that capture intricate topological relationships.

MERGE: Multi-faceted Hierarchical Graph-based GNN for Gene Expression Prediction from Whole Slide Histopathology Images

Recent advances in Spatial Transcriptomics (ST) pair histology images with spatially resolved gene expression profiles, enabling predictions of gene expression across different tissue locations based on image patches. This opens up new possibilities for enhancing whole slide image (WSI) prediction tasks with localized gene expression. However, existing methods fail to fully leverage the interactions between different tissue locations, which are crucial for accurate joint prediction. To address this, we introduce MERGE (Multi-faceted hiErarchical gRaph for Gene Expressions), which combines a multi-faceted hierarchical graph construction strategy with graph neural networks (GNN) to improve gene expression predictions from WSIs. By clustering tissue image patches based on both spatial and morphological features, and incorporating intra- and inter-cluster edges, our approach fosters interactions between distant tissue locations during GNN learning. As an additional contribution, we evaluate different data smoothing techniques that are necessary to mitigate artifacts in ST data, often caused by technical imperfections. We advocate for adopting gene-aware smoothing methods that are more biologically justified. Experimental results on gene expression prediction show that our GNN method outperforms state-of-the-art techniques across multiple metrics.

FedAH: Aggregated Head for Personalized Federated Learning

Recently, Federated Learning (FL) has gained popularity for its privacy-preserving and collaborative learning capabilities. Personalized Federated Learning (PFL), building upon FL, aims to address the issue of statistical heterogeneity and achieve personalization. Personalized-head-based PFL is a common and effective PFL method that splits the model into a feature extractor and a head, where the feature extractor is collaboratively trained and shared, while the head is locally trained and not shared. However, retaining the head locally, although achieving personalization, prevents the model from learning global knowledge in the head, thus affecting the performance of the personalized model. To solve this problem, we propose a novel PFL method called Federated Learning with Aggregated Head (FedAH), which initializes the head with an Aggregated Head at each iteration. The key feature of FedAH is to perform element-level aggregation between the local model head and the global model head to introduce global information from the global model head. To evaluate the effectiveness of FedAH, we conduct extensive experiments on five benchmark datasets in the fields of computer vision and natural language processing. FedAH outperforms ten state-of-the-art FL methods in terms of test accuracy by 2.87%. Additionally, FedAH maintains its advantage even in scenarios where some clients drop out unexpectedly. Our code is open-accessed at https://github.com/heyuepeng/FedAH.

RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency

Spatial transcriptomics (ST) provides essential spatial context by mapping gene expression within tissue, enabling detailed study of cellular heterogeneity and tissue organization. However, aligning ST data with histology images poses challenges due to inherent spatial distortions and modality-specific variations. Existing methods largely rely on direct alignment, which often fails to capture complex cross-modal relationships. To address these limitations, we propose a novel framework that aligns gene and image features using a ranking-based alignment loss, preserving relative similarity across modalities and enabling robust multi-scale alignment. To further enhance the alignment's stability, we employ self-supervised knowledge distillation with a teacher-student network architecture, effectively mitigating disruptions from high dimensionality, sparsity, and noise in gene expression data. Extensive experiments on gene expression prediction and survival analysis demonstrate our framework's effectiveness, showing improved alignment and predictive performance over existing methods and establishing a robust tool for gene-guided image representation learning in digital pathology.