QCResUNet: Joint Subject-level and Voxel-level Segmentation Quality Prediction

Deep learning has made significant strides in automated brain tumor segmentation from magnetic resonance imaging (MRI) scans in recent years. However, the reliability of these tools is hampered by the presence of poor-quality segmentation outliers, particularly in out-of-distribution samples, making their implementation in clinical practice difficult. Therefore, there is a need for quality control (QC) to screen the quality of the segmentation results. Although numerous automatic QC methods have been developed for segmentation quality screening, most were designed for cardiac MRI segmentation, which involves a single modality and a single tissue type. Furthermore, most prior works only provided subject-level predictions of segmentation quality and did not identify erroneous parts segmentation that may require refinement. To address these limitations, we proposed a novel multi-task deep learning architecture, termed QCResUNet, which produces subject-level segmentation-quality measures as well as voxel-level segmentation error maps for each available tissue class. To validate the effectiveness of the proposed method, we conducted experiments on assessing its performance on evaluating the quality of two distinct segmentation tasks. First, we aimed to assess the quality of brain tumor segmentation results. For this task, we performed experiments on one internal and two external datasets. Second, we aimed to evaluate the segmentation quality of cardiac Magnetic Resonance Imaging (MRI) data from the Automated Cardiac Diagnosis Challenge. The proposed method achieved high performance in predicting subject-level segmentation-quality metrics and accurately identifying segmentation errors on a voxel basis. This has the potential to be used to guide human-in-the-loop feedback to improve segmentations in clinical settings.

Any3DIS: Class-Agnostic 3D Instance Segmentation by 2D Mask Tracking

Existing 3D instance segmentation methods frequently encounter issues with over-segmentation, leading to redundant and inaccurate 3D proposals that complicate downstream tasks. This challenge arises from their unsupervised merging approach, where dense 2D instance masks are lifted across frames into point clouds to form 3D candidate proposals without direct supervision. These candidates are then hierarchically merged based on heuristic criteria, often resulting in numerous redundant segments that fail to combine into precise 3D proposals. To overcome these limitations, we propose a 3D-Aware 2D Mask Tracking module that uses robust 3D priors from a 2D mask segmentation and tracking foundation model (SAM-2) to ensure consistent object masks across video frames. Rather than merging all visible superpoints across views to create a 3D mask, our 3D Mask Optimization module leverages a dynamic programming algorithm to select an optimal set of views, refining the superpoints to produce a final 3D proposal for each object. Our approach achieves comprehensive object coverage within the scene while reducing unnecessary proposals, which could otherwise impair downstream applications. Evaluations on ScanNet200 and ScanNet++ confirm the effectiveness of our method, with improvements across Class-Agnostic, Open-Vocabulary, and Open-Ended 3D Instance Segmentation tasks.

$\textit{lucie}$: An Improved Python Package for Loading Datasets from the UCI Machine Learning Repository

The University of California--Irvine (UCI) Machine Learning (ML) Repository (UCIMLR) is consistently cited as one of the most popular dataset repositories, hosting hundreds of high-impact datasets. However, a significant portion, including 28.4% of the top 250, cannot be imported via the $\textit{ucimlrepo}$ package that is provided and recommended by the UCIMLR website. Instead, they are hosted as .zip files, containing nonstandard formats that are difficult to import without additional ad hoc processing. To address this issue, here we present $\textit{lucie}$ -- $\underline{l}oad$ $\underline{U}niversity$ $\underline{C}alifornia$ $\underline{I}rvine$ $\underline{e}xamples$ -- a utility that automatically determines the data format and imports many of these previously non-importable datasets, while preserving as much of a tabular data structure as possible. $\textit{lucie}$ was designed using the top 100 most popular datasets and benchmarked on the next 130, where it resulted in a success rate of 95.4% vs. 73.1% for $\textit{ucimlrepo}$. $\textit{lucie}$ is available as a Python package on PyPI with 98% code coverage.

OpenSUN3D: 1st Workshop Challenge on Open-Vocabulary 3D Scene Understanding

This report provides an overview of the challenge hosted at the OpenSUN3D Workshop on Open-Vocabulary 3D Scene Understanding held in conjunction with ICCV 2023. The goal of this workshop series is to provide a platform for exploration and discussion of open-vocabulary 3D scene understanding tasks, including but not limited to segmentation, detection and mapping. We provide an overview of the challenge hosted at the workshop, present the challenge dataset, the evaluation methodology, and brief descriptions of the winning methods. For additional details, please see https://opensun3d.github.io/index_iccv23.html.

Real-Time Diagnostic Integrity Meets Efficiency: A Novel Platform-Agnostic Architecture for Physiological Signal Compression

Head-based signals such as EEG, EMG, EOG, and ECG collected by wearable systems will play a pivotal role in clinical diagnosis, monitoring, and treatment of important brain disorder diseases. However, the real-time transmission of the significant corpus physiological signals over extended periods consumes substantial power and time, limiting the viability of battery-dependent physiological monitoring wearables. This paper presents a novel deep-learning framework employing a variational autoencoder (VAE) for physiological signal compression to reduce wearables' computational complexity and energy consumption. Our approach achieves an impressive compression ratio of 1:293 specifically for spectrogram data, surpassing state-of-the-art compression techniques such as JPEG2000, H.264, Direct Cosine Transform (DCT), and Huffman Encoding, which do not excel in handling physiological signals. We validate the efficacy of the compressed algorithms using collected physiological signals from real patients in the Hospital and deploy the solution on commonly used embedded AI chips (i.e., ARM Cortex V8 and Jetson Nano). The proposed framework achieves a 91% seizure detection accuracy using XGBoost, confirming the approach's reliability, practicality, and scalability.

An Unobtrusive and Lightweight Ear-worn System for Continuous Epileptic Seizure Detection

Epilepsy is one of the most common neurological diseases globally, affecting around 50 million people worldwide. Fortunately, up to 70 percent of people with epilepsy could live seizure-free if properly diagnosed and treated, and a reliable technique to monitor the onset of seizures could improve the quality of life of patients who are constantly facing the fear of random seizure attacks. The scalp-based EEG test, despite being the gold standard for diagnosing epilepsy, is costly, necessitates hospitalization, demands skilled professionals for operation, and is discomforting for users. In this paper, we propose EarSD, a novel lightweight, unobtrusive, and socially acceptable ear-worn system to detect epileptic seizure onsets by measuring the physiological signals from behind the user's ears. EarSD includes an integrated custom-built sensing, computing, and communication PCB to collect and amplify the signals of interest, remove the noises caused by motion artifacts and environmental impacts, and stream the data wirelessly to the computer or mobile phone nearby, where data are uploaded to the host computer for further processing. We conducted both in-lab and in-hospital experiments with epileptic seizure patients who were hospitalized for seizure studies. The preliminary results confirm that EarSD can detect seizures with up to 95.3 percent accuracy by just using classical machine learning algorithms.

TabIQA: Table Questions Answering on Business Document Images

Table answering questions from business documents has many challenges that require understanding tabular structures, cross-document referencing, and additional numeric computations beyond simple search queries. This paper introduces a novel pipeline, named TabIQA, to answer questions about business document images. TabIQA combines state-of-the-art deep learning techniques 1) to extract table content and structural information from images and 2) to answer various questions related to numerical data, text-based information, and complex queries from structured tables. The evaluation results on VQAonBD 2023 dataset demonstrate the effectiveness of TabIQA in achieving promising performance in answering table-related questions. The TabIQA repository is available at https://github.com/phucty/itabqa.

Rethinking Image-based Table Recognition Using Weakly Supervised Methods

Most of the previous methods for table recognition rely on training datasets containing many richly annotated table images. Detailed table image annotation, e.g., cell or text bounding box annotation, however, is costly and often subjective. In this paper, we propose a weakly supervised model named WSTabNet for table recognition that relies only on HTML (or LaTeX) code-level annotations of table images. The proposed model consists of three main parts: an encoder for feature extraction, a structure decoder for generating table structure, and a cell decoder for predicting the content of each cell in the table. Our system is trained end-to-end by stochastic gradient descent algorithms, requiring only table images and their ground-truth HTML (or LaTeX) representations. To facilitate table recognition with deep learning, we create and release WikiTableSet, the largest publicly available image-based table recognition dataset built from Wikipedia. WikiTableSet contains nearly 4 million English table images, 590K Japanese table images, and 640k French table images with corresponding HTML representation and cell bounding boxes. The extensive experiments on WikiTableSet and two large-scale datasets: FinTabNet and PubTabNet demonstrate that the proposed weakly supervised model achieves better, or similar accuracies compared to the state-of-the-art models on all benchmark datasets.

TabEAno: Table to Knowledge Graph Entity Annotation

In the Open Data era, a large number of table resources have been made available on the Web and data portals. However, it is difficult to directly utilize such data due to the ambiguity of entities, name variations, heterogeneous schema, missing, or incomplete metadata. To address these issues, we propose a novel approach, namely TabEAno, to semantically annotate table rows toward knowledge graph entities. Specifically, we introduce a "two-cells" lookup strategy bases on the assumption that there is an existing logical relation occurring in the knowledge graph between the two closed cells in the same row of the table. Despite the simplicity of the approach, TabEAno outperforms the state of the art approaches in the two standard datasets e.g, T2D, Limaye with, and in the large-scale Wikipedia tables dataset.

MTab: Matching Tabular Data to Knowledge Graph using Probability Models

This paper presents the design of our system, namely MTab, for Semantic Web Challenge on Tabular Data to Knowledge Graph Matching (SemTab 2019). MTab combines the voting algorithm and the probability models to solve critical problems of the matching tasks. Results on SemTab 2019 show that MTab obtains promising performance for the three matching tasks.