Order Matters in Retrosynthesis: Structure-aware Generation via Reaction-Center-Guided Discrete Flow Matching

Template-free retrosynthesis methods treat the task as black-box sequence generation, limiting learning efficiency, while semi-template approaches rely on rigid reaction libraries that constrain generalization. We address this gap with a key insight: atom ordering in neural representations matters. Building on this insight, we propose a structure-aware template-free framework that encodes the two-stage nature of chemical reactions as a positional inductive bias. By placing reaction center atoms at the sequence head, our method transforms implicit chemical knowledge into explicit positional patterns that the model can readily capture. The proposed RetroDiT backbone, a graph transformer with rotary position embeddings, exploits this ordering to prioritize chemically critical regions. Combined with discrete flow matching, our approach decouples training from sampling and enables generation in 20--50 steps versus 500 for prior diffusion methods. Our method achieves state-of-the-art performance on both USPTO-50k (61.2% top-1) and the large-scale USPTO-Full (51.3% top-1) with predicted reaction centers. With oracle centers, performance reaches 71.1% and 63.4% respectively, surpassing foundation models trained on 10 billion reactions while using orders of magnitude less data. Ablation studies further reveal that structural priors outperform brute-force scaling: a 280K-parameter model with proper ordering matches a 65M-parameter model without it.

Ex-Omni: Enabling 3D Facial Animation Generation for Omni-modal Large Language Models

Omni-modal large language models (OLLMs) aim to unify multimodal understanding and generation, yet incorporating speech with 3D facial animation remains largely unexplored despite its importance for natural interaction. A key challenge arises from the representation mismatch between discrete, token-level semantic reasoning in LLMs and the dense, fine-grained temporal dynamics required for 3D facial motion, which makes direct modeling difficult to optimize under limited data. We propose Expressive Omni (Ex-Omni), an open-source omni-modal framework that augments OLLMs with speech-accompanied 3D facial animation. Ex-Omni reduces learning difficulty by decoupling semantic reasoning from temporal generation, leveraging speech units as temporal scaffolding and a unified token-as-query gated fusion (TQGF) mechanism for controlled semantic injection. We further introduce InstructEx, a dataset aims to facilitate augment OLLMs with speech-accompanied 3D facial animation. Extensive experiments demonstrate that Ex-Omni performs competitively against existing open-source OLLMs while enabling stable aligned speech and facial animation generation.

Towards Agentic Intelligence for Materials Science

The convergence of artificial intelligence and materials science presents a transformative opportunity, but achieving true acceleration in discovery requires moving beyond task-isolated, fine-tuned models toward agentic systems that plan, act, and learn across the full discovery loop. This survey advances a unique pipeline-centric view that spans from corpus curation and pretraining, through domain adaptation and instruction tuning, to goal-conditioned agents interfacing with simulation and experimental platforms. Unlike prior reviews, we treat the entire process as an end-to-end system to be optimized for tangible discovery outcomes rather than proxy benchmarks. This perspective allows us to trace how upstream design choices-such as data curation and training objectives-can be aligned with downstream experimental success through effective credit assignment. To bridge communities and establish a shared frame of reference, we first present an integrated lens that aligns terminology, evaluation, and workflow stages across AI and materials science. We then analyze the field through two focused lenses: From the AI perspective, the survey details LLM strengths in pattern recognition, predictive analytics, and natural language processing for literature mining, materials characterization, and property prediction; from the materials science perspective, it highlights applications in materials design, process optimization, and the acceleration of computational workflows via integration with external tools (e.g., DFT, robotic labs). Finally, we contrast passive, reactive approaches with agentic design, cataloging current contributions while motivating systems that pursue long-horizon goals with autonomy, memory, and tool use. This survey charts a practical roadmap towards autonomous, safety-aware LLM agents aimed at discovering novel and useful materials.

UM3: Unsupervised Map to Map Matching

Map-to-map matching is a critical task for aligning spatial data across heterogeneous sources, yet it remains challenging due to the lack of ground truth correspondences, sparse node features, and scalability demands. In this paper, we propose an unsupervised graph-based framework that addresses these challenges through three key innovations. First, our method is an unsupervised learning approach that requires no training data, which is crucial for large-scale map data where obtaining labeled training samples is challenging. Second, we introduce pseudo coordinates that capture the relative spatial layout of nodes within each map, which enhances feature discriminability and enables scale-invariant learning. Third, we design an mechanism to adaptively balance feature and geometric similarity, as well as a geometric-consistent loss function, ensuring robustness to noisy or incomplete coordinate data. At the implementation level, to handle large-scale maps, we develop a tile-based post-processing pipeline with overlapping regions and majority voting, which enables parallel processing while preserving boundary coherence. Experiments on real-world datasets demonstrate that our method achieves state-of-the-art accuracy in matching tasks, surpassing existing methods by a large margin, particularly in high-noise and large-scale scenarios. Our framework provides a scalable and practical solution for map alignment, offering a robust and efficient alternative to traditional approaches.

GLM-4.5: Agentic, Reasoning, and Coding (ARC) Foundation Models

We present GLM-4.5, an open-source Mixture-of-Experts (MoE) large language model with 355B total parameters and 32B activated parameters, featuring a hybrid reasoning method that supports both thinking and direct response modes. Through multi-stage training on 23T tokens and comprehensive post-training with expert model iteration and reinforcement learning, GLM-4.5 achieves strong performance across agentic, reasoning, and coding (ARC) tasks, scoring 70.1% on TAU-Bench, 91.0% on AIME 24, and 64.2% on SWE-bench Verified. With much fewer parameters than several competitors, GLM-4.5 ranks 3rd overall among all evaluated models and 2nd on agentic benchmarks. We release both GLM-4.5 (355B parameters) and a compact version, GLM-4.5-Air (106B parameters), to advance research in reasoning and agentic AI systems. Code, models, and more information are available at https://github.com/zai-org/GLM-4.5.

EVA-MILP: Towards Standardized Evaluation of MILP Instance Generation

Mixed-Integer Linear Programming (MILP) is fundamental to solving complex decision-making problems. The proliferation of MILP instance generation methods, driven by machine learning's demand for diverse optimization datasets and the limitations of static benchmarks, has significantly outpaced standardized evaluation techniques. Consequently, assessing the fidelity and utility of synthetic MILP instances remains a critical, multifaceted challenge. This paper introduces a comprehensive benchmark framework designed for the systematic and objective evaluation of MILP instance generation methods. Our framework provides a unified and extensible methodology, assessing instance quality across crucial dimensions: mathematical validity, structural similarity, computational hardness, and utility in downstream machine learning tasks. A key innovation is its in-depth analysis of solver-internal features -- particularly by comparing distributions of key solver outputs including root node gap, heuristic success rates, and cut plane usage -- leveraging the solver's dynamic solution behavior as an `expert assessment' to reveal nuanced computational resemblances. By offering a structured approach with clearly defined solver-independent and solver-dependent metrics, our benchmark aims to facilitate robust comparisons among diverse generation techniques, spur the development of higher-quality instance generators, and ultimately enhance the reliability of research reliant on synthetic MILP data. The framework's effectiveness in systematically comparing the fidelity of instance sets is demonstrated using contemporary generative models.

Importance Weighted Score Matching for Diffusion Samplers with Enhanced Mode Coverage

Training neural samplers directly from unnormalized densities without access to target distribution samples presents a significant challenge. A critical desideratum in these settings is achieving comprehensive mode coverage, ensuring the sampler captures the full diversity of the target distribution. However, prevailing methods often circumvent the lack of target data by optimizing reverse KL-based objectives. Such objectives inherently exhibit mode-seeking behavior, potentially leading to incomplete representation of the underlying distribution. While alternative approaches strive for better mode coverage, they typically rely on implicit mechanisms like heuristics or iterative refinement. In this work, we propose a principled approach for training diffusion-based samplers by directly targeting an objective analogous to the forward KL divergence, which is conceptually known to encourage mode coverage. We introduce \textit{Importance Weighted Score Matching}, a method that optimizes this desired mode-covering objective by re-weighting the score matching loss using tractable importance sampling estimates, thereby overcoming the absence of target distribution data. We also provide theoretical analysis of the bias and variance for our proposed Monte Carlo estimator and the practical loss function used in our method. Experiments on increasingly complex multi-modal distributions, including 2D Gaussian Mixture Models with up to 120 modes and challenging particle systems with inherent symmetries -- demonstrate that our approach consistently outperforms existing neural samplers across all distributional distance metrics, achieving state-of-the-art results on all benchmarks.

Neural Graduated Assignment for Maximum Common Edge Subgraphs

The Maximum Common Edge Subgraph (MCES) problem is a crucial challenge with significant implications in domains such as biology and chemistry. Traditional approaches, which include transformations into max-clique and search-based algorithms, suffer from scalability issues when dealing with larger instances. This paper introduces ``Neural Graduated Assignment'' (NGA), a simple, scalable, unsupervised-training-based method that addresses these limitations by drawing inspiration from the classical Graduated Assignment (GA) technique. Central to NGA is stacking of neural components that closely resemble the GA process, but with the reparameterization of learnable temperature into higher dimension. We further theoretically analyze the learning dynamics of NGA, showing its design leads to fast convergence, better exploration-exploitation tradeoff, and ability to escape local optima. Extensive experiments across MCES computation, graph similarity estimation, and graph retrieval tasks reveal that NGA not only significantly improves computation time and scalability on large instances but also enhances performance compared to existing methodologies. The introduction of NGA marks a significant advancement in the computation of MCES and offers insights into other assignment problems.

Secrets of GFlowNets' Learning Behavior: A Theoretical Study

Generative Flow Networks (GFlowNets) have emerged as a powerful paradigm for generating composite structures, demonstrating considerable promise across diverse applications. While substantial progress has been made in exploring their modeling validity and connections to other generative frameworks, the theoretical understanding of their learning behavior remains largely uncharted. In this work, we present a rigorous theoretical investigation of GFlowNets' learning behavior, focusing on four fundamental dimensions: convergence, sample complexity, implicit regularization, and robustness. By analyzing these aspects, we seek to elucidate the intricate mechanisms underlying GFlowNet's learning dynamics, shedding light on its strengths and limitations. Our findings contribute to a deeper understanding of the factors influencing GFlowNet performance and provide insights into principled guidelines for their effective design and deployment. This study not only bridges a critical gap in the theoretical landscape of GFlowNets but also lays the foundation for their evolution as a reliable and interpretable framework for generative modeling. Through this, we aspire to advance the theoretical frontiers of GFlowNets and catalyze their broader adoption in the AI community.

GraphOmni: A Comprehensive and Extendable Benchmark Framework for Large Language Models on Graph-theoretic Tasks

In this paper, we presented GraphOmni, a comprehensive benchmark framework for systematically evaluating the graph reasoning capabilities of LLMs. By analyzing critical dimensions, including graph types, serialization formats, and prompt schemes, we provided extensive insights into the strengths and limitations of current LLMs. Our empirical findings emphasize that no single serialization or prompting strategy consistently outperforms others. Motivated by these insights, we propose a reinforcement learning-based approach that dynamically selects the best serialization-prompt pairings, resulting in significant accuracy improvements. GraphOmni's modular and extensible design establishes a robust foundation for future research, facilitating advancements toward general-purpose graph reasoning models.