Horticultural Temporal Fruit Monitoring via 3D Instance Segmentation and Re-Identification using Point Clouds

Robotic fruit monitoring is a key step toward automated agricultural production systems. Robots can significantly enhance plant and temporal fruit monitoring by providing precise, high-throughput assessments that overcome the limitations of traditional manual methods. Fruit monitoring is a challenging task due to the significant variation in size, shape, orientation, and occlusion of fruits. Also, fruits may be harvested or newly grown between recording sessions. Most methods are 2D image-based and they lack the 3D structure, depth, and spatial information, which represent key aspects of fruit monitoring. 3D colored point clouds, instead, can offer this information but they introduce challenges such as their sparsity and irregularity. In this paper, we present a novel approach for temporal fruit monitoring that addresses point clouds collected in a greenhouse over time. Our method segments fruits using a learning-based instance segmentation approach directly on the point cloud. Each segmented fruit is processed by a 3D sparse convolutional neural network to extract descriptors, which are used in an attention-based matching network to associate fruits with their instances from previous data collections. Experimental results on a real dataset of strawberries demonstrate that our approach outperforms other methods for fruits re-identification over time, allowing for precise temporal fruit monitoring in real and complex scenarios.

AdaCropFollow: Self-Supervised Online Adaptation for Visual Under-Canopy Navigation

Under-canopy agricultural robots can enable various applications like precise monitoring, spraying, weeding, and plant manipulation tasks throughout the growing season. Autonomous navigation under the canopy is challenging due to the degradation in accuracy of RTK-GPS and the large variability in the visual appearance of the scene over time. In prior work, we developed a supervised learning-based perception system with semantic keypoint representation and deployed this in various field conditions. A large number of failures of this system can be attributed to the inability of the perception model to adapt to the domain shift encountered during deployment. In this paper, we propose a self-supervised online adaptation method for adapting the semantic keypoint representation using a visual foundational model, geometric prior, and pseudo labeling. Our preliminary experiments show that with minimal data and fine-tuning of parameters, the keypoint prediction model trained with labels on the source domain can be adapted in a self-supervised manner to various challenging target domains onboard the robot computer using our method. This can enable fully autonomous row-following capability in under-canopy robots across fields and crops without requiring human intervention.

Active Learning of Robot Vision Using Adaptive Path Planning

Robots need robust and flexible vision systems to perceive and reason about their environments beyond geometry. Most of such systems build upon deep learning approaches. As autonomous robots are commonly deployed in initially unknown environments, pre-training on static datasets cannot always capture the variety of domains and limits the robot's vision performance during missions. Recently, self-supervised as well as fully supervised active learning methods emerged to improve robotic vision. These approaches rely on large in-domain pre-training datasets or require substantial human labelling effort. To address these issues, we present a recent adaptive planning framework for efficient training data collection to substantially reduce human labelling requirements in semantic terrain monitoring missions. To this end, we combine high-quality human labels with automatically generated pseudo labels. Experimental results show that the framework reaches segmentation performance close to fully supervised approaches with drastically reduced human labelling effort while outperforming purely self-supervised approaches. We discuss the advantages and limitations of current methods and outline valuable future research avenues towards more robust and flexible robotic vision systems in unknown environments.

High-throughput 3D shape completion of potato tubers on a harvester

Potato yield is an important metric for farmers to further optimize their cultivation practices. Potato yield can be estimated on a harvester using an RGB-D camera that can estimate the three-dimensional (3D) volume of individual potato tubers. A challenge, however, is that the 3D shape derived from RGB-D images is only partially completed, underestimating the actual volume. To address this issue, we developed a 3D shape completion network, called CoRe++, which can complete the 3D shape from RGB-D images. CoRe++ is a deep learning network that consists of a convolutional encoder and a decoder. The encoder compresses RGB-D images into latent vectors that are used by the decoder to complete the 3D shape using the deep signed distance field network (DeepSDF). To evaluate our CoRe++ network, we collected partial and complete 3D point clouds of 339 potato tubers on an operational harvester in Japan. On the 1425 RGB-D images in the test set (representing 51 unique potato tubers), our network achieved a completion accuracy of 2.8 mm on average. For volumetric estimation, the root mean squared error (RMSE) was 22.6 ml, and this was better than the RMSE of the linear regression (31.1 ml) and the base model (36.9 ml). We found that the RMSE can be further reduced to 18.2 ml when performing the 3D shape completion in the center of the RGB-D image. With an average 3D shape completion time of 10 milliseconds per tuber, we can conclude that CoRe++ is both fast and accurate enough to be implemented on an operational harvester for high-throughput potato yield estimation. Our code, network weights and dataset are publicly available at https://github.com/UTokyo-FieldPhenomics-Lab/corepp.git.

A Dataset and Benchmark for Shape Completion of Fruits for Agricultural Robotics

As the population is expected to reach 10 billion by 2050, our agricultural production system needs to double its productivity despite a decline of human workforce in the agricultural sector. Autonomous robotic systems are one promising pathway to increase productivity by taking over labor-intensive manual tasks like fruit picking. To be effective, such systems need to monitor and interact with plants and fruits precisely, which is challenging due to the cluttered nature of agricultural environments causing, for example, strong occlusions. Thus, being able to estimate the complete 3D shapes of objects in presence of occlusions is crucial for automating operations such as fruit harvesting. In this paper, we propose the first publicly available 3D shape completion dataset for agricultural vision systems. We provide an RGB-D dataset for estimating the 3D shape of fruits. Specifically, our dataset contains RGB-D frames of single sweet peppers in lab conditions but also in a commercial greenhouse. For each fruit, we additionally collected high-precision point clouds that we use as ground truth. For acquiring the ground truth shape, we developed a measuring process that allows us to record data of real sweet pepper plants, both in the lab and in the greenhouse with high precision, and determine the shape of the sensed fruits. We release our dataset, consisting of almost 7000 RGB-D frames belonging to more than 100 different fruits. We provide segmented RGB-D frames, with camera instrinsics to easily obtain colored point clouds, together with the corresponding high-precision, occlusion-free point clouds obtained with a high-precision laser scanner. We additionally enable evaluation ofshape completion approaches on a hidden test set through a public challenge on a benchmark server.

Open-World Semantic Segmentation Including Class Similarity

Interpreting camera data is key for autonomously acting systems, such as autonomous vehicles. Vision systems that operate in real-world environments must be able to understand their surroundings and need the ability to deal with novel situations. This paper tackles open-world semantic segmentation, i.e., the variant of interpreting image data in which objects occur that have not been seen during training. We propose a novel approach that performs accurate closed-world semantic segmentation and, at the same time, can identify new categories without requiring any additional training data. Our approach additionally provides a similarity measure for every newly discovered class in an image to a known category, which can be useful information in downstream tasks such as planning or mapping. Through extensive experiments, we show that our model achieves state-of-the-art results on classes known from training data as well as for anomaly segmentation and can distinguish between different unknown classes.

Deep Reinforcement Learning with Dynamic Graphs for Adaptive Informative Path Planning

Autonomous robots are often employed for data collection due to their efficiency and low labour costs. A key task in robotic data acquisition is planning paths through an initially unknown environment to collect observations given platform-specific resource constraints, such as limited battery life. Adaptive online path planning in 3D environments is challenging due to the large set of valid actions and the presence of unknown occlusions. To address these issues, we propose a novel deep reinforcement learning approach for adaptively replanning robot paths to map targets of interest in unknown 3D environments. A key aspect of our approach is a dynamically constructed graph that restricts planning actions local to the robot, allowing us to quickly react to newly discovered obstacles and targets of interest. For replanning, we propose a new reward function that balances between exploring the unknown environment and exploiting online-collected data about the targets of interest. Our experiments show that our method enables more efficient target detection compared to state-of-the-art learning and non-learning baselines. We also show the applicability of our approach for orchard monitoring using an unmanned aerial vehicle in a photorealistic simulator.

Unsupervised Pre-Training for 3D Leaf Instance Segmentation

Crops for food, feed, fiber, and fuel are key natural resources for our society. Monitoring plants and measuring their traits is an important task in agriculture often referred to as plant phenotyping. Traditionally, this task is done manually, which is time- and labor-intensive. Robots can automate phenotyping providing reproducible and high-frequency measurements. Today's perception systems use deep learning to interpret these measurements, but require a substantial amount of annotated data to work well. Obtaining such labels is challenging as it often requires background knowledge on the side of the labelers. This paper addresses the problem of reducing the labeling effort required to perform leaf instance segmentation on 3D point clouds, which is a first step toward phenotyping in 3D. Separating all leaves allows us to count them and compute relevant traits as their areas, lengths, and widths. We propose a novel self-supervised task-specific pre-training approach to initialize the backbone of a network for leaf instance segmentation. We also introduce a novel automatic postprocessing that considers the difficulty of correctly segmenting the points close to the stem, where all the leaves petiole overlap. The experiments presented in this paper suggest that our approach boosts the performance over all the investigated scenarios. We also evaluate the embeddings to assess the quality of the fully unsupervised approach and see a higher performance of our domain-specific postprocessing.

BonnBeetClouds3D: A Dataset Towards Point Cloud-based Organ-level Phenotyping of Sugar Beet Plants under Field Conditions

Agricultural production is facing severe challenges in the next decades induced by climate change and the need for sustainability, reducing its impact on the environment. Advancements in field management through non-chemical weeding by robots in combination with monitoring of crops by autonomous unmanned aerial vehicles (UAVs) and breeding of novel and more resilient crop varieties are helpful to address these challenges. The analysis of plant traits, called phenotyping, is an essential activity in plant breeding, it however involves a great amount of manual labor. With this paper, we address the problem of automatic fine-grained organ-level geometric analysis needed for precision phenotyping. As the availability of real-world data in this domain is relatively scarce, we propose a novel dataset that was acquired using UAVs capturing high-resolution images of a real breeding trial containing 48 plant varieties and therefore covering great morphological and appearance diversity. This enables the development of approaches for autonomous phenotyping that generalize well to different varieties. Based on overlapping high-resolution images from multiple viewing angles, we compute photogrammetric dense point clouds and provide detailed and accurate point-wise labels for plants, leaves, and salient points as the tip and the base. Additionally, we include measurements of phenotypic traits performed by experts from the German Federal Plant Variety Office on the real plants, allowing the evaluation of new approaches not only on segmentation and keypoint detection but also directly on the downstream tasks. The provided labeled point clouds enable fine-grained plant analysis and support further progress in the development of automatic phenotyping approaches, but also enable further research in surface reconstruction, point cloud completion, and semantic interpretation of point clouds.

Semi-Supervised Active Learning for Semantic Segmentation in Unknown Environments Using Informative Path Planning

Semantic segmentation enables robots to perceive and reason about their environments beyond geometry. Most of such systems build upon deep learning approaches. As autonomous robots are commonly deployed in initially unknown environments, pre-training on static datasets cannot always capture the variety of domains and limits the robot's perception performance during missions. Recently, self-supervised and fully supervised active learning methods emerged to improve a robot's vision. These approaches rely on large in-domain pre-training datasets or require substantial human labelling effort. We propose a planning method for semi-supervised active learning of semantic segmentation that substantially reduces human labelling requirements compared to fully supervised approaches. We leverage an adaptive map-based planner guided towards the frontiers of unexplored space with high model uncertainty collecting training data for human labelling. A key aspect of our approach is to combine the sparse high-quality human labels with pseudo labels automatically extracted from highly certain environment map areas. Experimental results show that our method reaches segmentation performance close to fully supervised approaches with drastically reduced human labelling effort while outperforming self-supervised approaches.