Transforming Science with Large Language Models: A Survey on AI-assisted Scientific Discovery, Experimentation, Content Generation, and Evaluation

With the advent of large multimodal language models, science is now at a threshold of an AI-based technological transformation. Recently, a plethora of new AI models and tools has been proposed, promising to empower researchers and academics worldwide to conduct their research more effectively and efficiently. This includes all aspects of the research cycle, especially (1) searching for relevant literature; (2) generating research ideas and conducting experimentation; generating (3) text-based and (4) multimodal content (e.g., scientific figures and diagrams); and (5) AI-based automatic peer review. In this survey, we provide an in-depth overview over these exciting recent developments, which promise to fundamentally alter the scientific research process for good. Our survey covers the five aspects outlined above, indicating relevant datasets, methods and results (including evaluation) as well as limitations and scope for future research. Ethical concerns regarding shortcomings of these tools and potential for misuse (fake science, plagiarism, harms to research integrity) take a particularly prominent place in our discussion. We hope that our survey will not only become a reference guide for newcomers to the field but also a catalyst for new AI-based initiatives in the area of "AI4Science".

Transforming Scholarly Landscapes: Influence of Large Language Models on Academic Fields beyond Computer Science

Large Language Models (LLMs) have ushered in a transformative era in Natural Language Processing (NLP), reshaping research and extending NLP's influence to other fields of study. However, there is little to no work examining the degree to which LLMs influence other research fields. This work empirically and systematically examines the influence and use of LLMs in fields beyond NLP. We curate $106$ LLMs and analyze $\sim$$148k$ papers citing LLMs to quantify their influence and reveal trends in their usage patterns. Our analysis reveals not only the increasing prevalence of LLMs in non-CS fields but also the disparities in their usage, with some fields utilizing them more frequently than others since 2018, notably Linguistics and Engineering together accounting for $\sim$$45\%$ of LLM citations. Our findings further indicate that most of these fields predominantly employ task-agnostic LLMs, proficient in zero or few-shot learning without requiring further fine-tuning, to address their domain-specific problems. This study sheds light on the cross-disciplinary impact of NLP through LLMs, providing a better understanding of the opportunities and challenges.

The Nature of NLP: Analyzing Contributions in NLP Papers

Natural Language Processing (NLP) is a dynamic, interdisciplinary field that integrates intellectual traditions from computer science, linguistics, social science, and more. Despite its established presence, the definition of what constitutes NLP research remains debated. In this work, we quantitatively investigate what constitutes NLP by examining research papers. For this purpose, we propose a taxonomy and introduce NLPContributions, a dataset of nearly $2k$ research paper abstracts, expertly annotated to identify scientific contributions and classify their types according to this taxonomy. We also propose a novel task to automatically identify these elements, for which we train a strong baseline on our dataset. We present experimental results from this task and apply our model to $\sim$$29k$ NLP research papers to analyze their contributions, aiding in the understanding of the nature of NLP research. Our findings reveal a rising involvement of machine learning in NLP since the early nineties, alongside a declining focus on adding knowledge about language or people; again, in post-2020, there has been a resurgence of focus on language and people. We hope this work will spark discussions on our community norms and inspire efforts to consciously shape the future.

SciDoc2Diagrammer-MAF: Towards Generation of Scientific Diagrams from Documents guided by Multi-Aspect Feedback Refinement

Automating the creation of scientific diagrams from academic papers can significantly streamline the development of tutorials, presentations, and posters, thereby saving time and accelerating the process. Current text-to-image models struggle with generating accurate and visually appealing diagrams from long-context inputs. We propose SciDoc2Diagram, a task that extracts relevant information from scientific papers and generates diagrams, along with a benchmarking dataset, SciDoc2DiagramBench. We develop a multi-step pipeline SciDoc2Diagrammer that generates diagrams based on user intentions using intermediate code generation. We observed that initial diagram drafts were often incomplete or unfaithful to the source, leading us to develop SciDoc2Diagrammer-Multi-Aspect-Feedback (MAF), a refinement strategy that significantly enhances factual correctness and visual appeal and outperforms existing models on both automatic and human judgement.

Grounding Fallacies Misrepresenting Scientific Publications in Evidence

Health-related misinformation claims often falsely cite a credible biomedical publication as evidence, which superficially appears to support the false claim. The publication does not really support the claim, but a reader could believe it thanks to the use of logical fallacies. Here, we aim to detect and to highlight such fallacies, which requires carefully assessing the exact content of the misrepresented publications. To achieve this, we introduce MissciPlus, an extension of the fallacy detection dataset Missci. MissciPlus builds on Missci by grounding the applied fallacies in real-world passages from misrepresented studies. This creates a realistic test-bed for detecting and verbalizing these fallacies under real-world input conditions, and enables novel passage-retrieval tasks. MissciPlus is the first logical fallacy dataset which pairs the real-world misrepresented evidence with incorrect claims, identical to the input to evidence-based fact-checking models. With MissciPlus, we i) benchmark retrieval models in identifying passages that support claims only when fallacies are applied, ii) evaluate how well LLMs articulate fallacious reasoning from misrepresented scientific passages, and iii) assess the effectiveness of fact-checking models in refuting claims that misrepresent biomedical research. Our findings show that current fact-checking models struggle to use relevant passages from misrepresented publications to refute misinformation. Moreover, these passages can mislead LLMs into accepting false claims as true.

A Course Shared Task on Evaluating LLM Output for Clinical Questions

This paper presents a shared task that we organized at the Foundations of Language Technology (FoLT) course in 2023/2024 at the Technical University of Darmstadt, which focuses on evaluating the output of Large Language Models (LLMs) in generating harmful answers to health-related clinical questions. We describe the task design considerations and report the feedback we received from the students. We expect the task and the findings reported in this paper to be relevant for instructors teaching natural language processing (NLP) and designing course assignments.

Systematic Task Exploration with LLMs: A Study in Citation Text Generation

Large language models (LLMs) bring unprecedented flexibility in defining and executing complex, creative natural language generation (NLG) tasks. Yet, this flexibility brings new challenges, as it introduces new degrees of freedom in formulating the task inputs and instructions and in evaluating model performance. To facilitate the exploration of creative NLG tasks, we propose a three-component research framework that consists of systematic input manipulation, reference data, and output measurement. We use this framework to explore citation text generation -- a popular scholarly NLP task that lacks consensus on the task definition and evaluation metric and has not yet been tackled within the LLM paradigm. Our results highlight the importance of systematically investigating both task instruction and input configuration when prompting LLMs, and reveal non-trivial relationships between different evaluation metrics used for citation text generation. Additional human generation and human evaluation experiments provide new qualitative insights into the task to guide future research in citation text generation. We make our code and data publicly available.

WikiContradict: A Benchmark for Evaluating LLMs on Real-World Knowledge Conflicts from Wikipedia

Retrieval-augmented generation (RAG) has emerged as a promising solution to mitigate the limitations of large language models (LLMs), such as hallucinations and outdated information. However, it remains unclear how LLMs handle knowledge conflicts arising from different augmented retrieved passages, especially when these passages originate from the same source and have equal trustworthiness. In this work, we conduct a comprehensive evaluation of LLM-generated answers to questions that have varying answers based on contradictory passages from Wikipedia, a dataset widely regarded as a high-quality pre-training resource for most LLMs. Specifically, we introduce WikiContradict, a benchmark consisting of 253 high-quality, human-annotated instances designed to assess LLM performance when augmented with retrieved passages containing real-world knowledge conflicts. We benchmark a diverse range of both closed and open-source LLMs under different QA scenarios, including RAG with a single passage, and RAG with 2 contradictory passages. Through rigorous human evaluations on a subset of WikiContradict instances involving 5 LLMs and over 3,500 judgements, we shed light on the behaviour and limitations of these models. For instance, when provided with two passages containing contradictory facts, all models struggle to generate answers that accurately reflect the conflicting nature of the context, especially for implicit conflicts requiring reasoning. Since human evaluation is costly, we also introduce an automated model that estimates LLM performance using a strong open-source language model, achieving an F-score of 0.8. Using this automated metric, we evaluate more than 1,500 answers from seven LLMs across all WikiContradict instances. To facilitate future work, we release WikiContradict on: https://ibm.biz/wikicontradict.

Missci: Reconstructing Fallacies in Misrepresented Science

Health-related misinformation on social networks can lead to poor decision-making and real-world dangers. Such misinformation often misrepresents scientific publications and cites them as "proof" to gain perceived credibility. To effectively counter such claims automatically, a system must explain how the claim was falsely derived from the cited publication. Current methods for automated fact-checking or fallacy detection neglect to assess the (mis)used evidence in relation to misinformation claims, which is required to detect the mismatch between them. To address this gap, we introduce Missci, a novel argumentation theoretical model for fallacious reasoning together with a new dataset for real-world misinformation detection that misrepresents biomedical publications. Unlike previous fallacy detection datasets, Missci (i) focuses on implicit fallacies between the relevant content of the cited publication and the inaccurate claim, and (ii) requires models to verbalize the fallacious reasoning in addition to classifying it. We present Missci as a dataset to test the critical reasoning abilities of large language models (LLMs), that are required to reconstruct real-world fallacious arguments, in a zero-shot setting. We evaluate two representative LLMs and the impact of different levels of detail about the fallacy classes provided to the LLM via prompts. Our experiments and human evaluation show promising results for GPT 4, while also demonstrating the difficulty of this task.

Holmes: Benchmark the Linguistic Competence of Language Models

We introduce Holmes, a benchmark to assess the linguistic competence of language models (LMs) - their ability to grasp linguistic phenomena. Unlike prior prompting-based evaluations, Holmes assesses the linguistic competence of LMs via their internal representations using classifier-based probing. In doing so, we disentangle specific phenomena (e.g., part-of-speech of words) from other cognitive abilities, like following textual instructions, and meet recent calls to assess LMs' linguistic competence in isolation. Composing Holmes, we review over 250 probing studies and feature more than 200 datasets to assess syntax, morphology, semantics, reasoning, and discourse phenomena. Analyzing over 50 LMs reveals that, aligned with known trends, their linguistic competence correlates with model size. However, surprisingly, model architecture and instruction tuning also significantly influence performance, particularly in morphology and syntax. Finally, we propose FlashHolmes, a streamlined version of Holmes designed to lower the high computation load while maintaining high-ranking precision.