MPBD-LSTM: A Predictive Model for Colorectal Liver Metastases Using Time Series Multi-phase Contrast-Enhanced CT Scans

Colorectal cancer is a prevalent form of cancer, and many patients develop colorectal cancer liver metastasis (CRLM) as a result. Early detection of CRLM is critical for improving survival rates. Radiologists usually rely on a series of multi-phase contrast-enhanced computed tomography (CECT) scans done during follow-up visits to perform early detection of the potential CRLM. These scans form unique five-dimensional data (time, phase, and axial, sagittal, and coronal planes in 3D CT). Most of the existing deep learning models can readily handle four-dimensional data (e.g., time-series 3D CT images) and it is not clear how well they can be extended to handle the additional dimension of phase. In this paper, we build a dataset of time-series CECT scans to aid in the early diagnosis of CRLM, and build upon state-of-the-art deep learning techniques to evaluate how to best predict CRLM. Our experimental results show that a multi-plane architecture based on 3D bi-directional LSTM, which we call MPBD-LSTM, works best, achieving an area under curve (AUC) of 0.79. On the other hand, analysis of the results shows that there is still great room for further improvement.

CardiacNet: Learning to Reconstruct Abnormalities for Cardiac Disease Assessment from Echocardiogram Videos

Echocardiogram video plays a crucial role in analysing cardiac function and diagnosing cardiac diseases. Current deep neural network methods primarily aim to enhance diagnosis accuracy by incorporating prior knowledge, such as segmenting cardiac structures or lesions annotated by human experts. However, diagnosing the inconsistent behaviours of the heart, which exist across both spatial and temporal dimensions, remains extremely challenging. For instance, the analysis of cardiac motion acquires both spatial and temporal information from the heartbeat cycle. To address this issue, we propose a novel reconstruction-based approach named CardiacNet to learn a better representation of local cardiac structures and motion abnormalities through echocardiogram videos. CardiacNet is accompanied by the Consistency Deformation Codebook (CDC) and the Consistency Deformed-Discriminator (CDD) to learn the commonalities across abnormal and normal samples by incorporating cardiac prior knowledge. In addition, we propose benchmark datasets named CardiacNet-PAH and CardiacNet-ASD to evaluate the effectiveness of cardiac disease assessment. In experiments, our CardiacNet can achieve state-of-the-art results in three different cardiac disease assessment tasks on public datasets CAMUS, EchoNet, and our datasets. The code and dataset are available at: https://github.com/xmed-lab/CardiacNet.

Contrastive Learning with Synthetic Positives

Contrastive learning with the nearest neighbor has proved to be one of the most efficient self-supervised learning (SSL) techniques by utilizing the similarity of multiple instances within the same class. However, its efficacy is constrained as the nearest neighbor algorithm primarily identifies ``easy'' positive pairs, where the representations are already closely located in the embedding space. In this paper, we introduce a novel approach called Contrastive Learning with Synthetic Positives (CLSP) that utilizes synthetic images, generated by an unconditional diffusion model, as the additional positives to help the model learn from diverse positives. Through feature interpolation in the diffusion model sampling process, we generate images with distinct backgrounds yet similar semantic content to the anchor image. These images are considered ``hard'' positives for the anchor image, and when included as supplementary positives in the contrastive loss, they contribute to a performance improvement of over 2\% and 1\% in linear evaluation compared to the previous NNCLR and All4One methods across multiple benchmark datasets such as CIFAR10, achieving state-of-the-art methods. On transfer learning benchmarks, CLSP outperforms existing SSL frameworks on 6 out of 8 downstream datasets. We believe CLSP establishes a valuable baseline for future SSL studies incorporating synthetic data in the training process.

Data-Algorithm-Architecture Co-Optimization for Fair Neural Networks on Skin Lesion Dataset

As Artificial Intelligence (AI) increasingly integrates into our daily lives, fairness has emerged as a critical concern, particularly in medical AI, where datasets often reflect inherent biases due to social factors like the underrepresentation of marginalized communities and socioeconomic barriers to data collection. Traditional approaches to mitigating these biases have focused on data augmentation and the development of fairness-aware training algorithms. However, this paper argues that the architecture of neural networks, a core component of Machine Learning (ML), plays a crucial role in ensuring fairness. We demonstrate that addressing fairness effectively requires a holistic approach that simultaneously considers data, algorithms, and architecture. Utilizing Automated ML (AutoML) technology, specifically Neural Architecture Search (NAS), we introduce a novel framework, BiaslessNAS, designed to achieve fair outcomes in analyzing skin lesion datasets. BiaslessNAS incorporates fairness considerations at every stage of the NAS process, leading to the identification of neural networks that are not only more accurate but also significantly fairer. Our experiments show that BiaslessNAS achieves a 2.55% increase in accuracy and a 65.50% improvement in fairness compared to traditional NAS methods, underscoring the importance of integrating fairness into neural network architecture for better outcomes in medical AI applications.

Invisible Backdoor Attack Through Singular Value Decomposition

With the widespread application of deep learning across various domains, concerns about its security have grown significantly. Among these, backdoor attacks pose a serious security threat to deep neural networks (DNNs). In recent years, backdoor attacks on neural networks have become increasingly sophisticated, aiming to compromise the security and trustworthiness of models by implanting hidden, unauthorized functionalities or triggers, leading to misleading predictions or behaviors. To make triggers less perceptible and imperceptible, various invisible backdoor attacks have been proposed. However, most of them only consider invisibility in the spatial domain, making it easy for recent defense methods to detect the generated toxic images.To address these challenges, this paper proposes an invisible backdoor attack called DEBA. DEBA leverages the mathematical properties of Singular Value Decomposition (SVD) to embed imperceptible backdoors into models during the training phase, thereby causing them to exhibit predefined malicious behavior under specific trigger conditions. Specifically, we first perform SVD on images, and then replace the minor features of trigger images with those of clean images, using them as triggers to ensure the effectiveness of the attack. As minor features are scattered throughout the entire image, the major features of clean images are preserved, making poisoned images visually indistinguishable from clean ones. Extensive experimental evaluations demonstrate that DEBA is highly effective, maintaining high perceptual quality and a high attack success rate for poisoned images. Furthermore, we assess the performance of DEBA under existing defense measures, showing that it is robust and capable of significantly evading and resisting the effects of these defense measures.

Towards Trustable Language Models: Investigating Information Quality of Large Language Models

Large language models (LLM) are generating information at a rapid pace, requiring users to increasingly rely and trust the data. Despite remarkable advances of LLM, Information generated by LLM is not completely trustworthy, due to challenges in information quality. Specifically, integrity of Information quality decreases due to unreliable, biased, tokenization during pre-training of LLM. Moreover, due to decreased information quality issues, has led towards hallucination, fabricated information. Unreliable information can lead towards flawed decisions in businesses, which impacts economic activity. In this work, we introduce novel mathematical information quality evaluation of LLM, we furthermore analyze and highlight information quality challenges, scaling laws to systematically scale language models.

GL-Fusion: Global-Local Fusion Network for Multi-view Echocardiogram Video Segmentation

Cardiac structure segmentation from echocardiogram videos plays a crucial role in diagnosing heart disease. The combination of multi-view echocardiogram data is essential to enhance the accuracy and robustness of automated methods. However, due to the visual disparity of the data, deriving cross-view context information remains a challenging task, and unsophisticated fusion strategies can even lower performance. In this study, we propose a novel Gobal-Local fusion (GL-Fusion) network to jointly utilize multi-view information globally and locally that improve the accuracy of echocardiogram analysis. Specifically, a Multi-view Global-based Fusion Module (MGFM) is proposed to extract global context information and to explore the cyclic relationship of different heartbeat cycles in an echocardiogram video. Additionally, a Multi-view Local-based Fusion Module (MLFM) is designed to extract correlations of cardiac structures from different views. Furthermore, we collect a multi-view echocardiogram video dataset (MvEVD) to evaluate our method. Our method achieves an 82.29% average dice score, which demonstrates a 7.83% improvement over the baseline method, and outperforms other existing state-of-the-art methods. To our knowledge, this is the first exploration of a multi-view method for echocardiogram video segmentation. Code available at: https://github.com/xmed-lab/GL-Fusion

GraphEcho: Graph-Driven Unsupervised Domain Adaptation for Echocardiogram Video Segmentation

Echocardiogram video segmentation plays an important role in cardiac disease diagnosis. This paper studies the unsupervised domain adaption (UDA) for echocardiogram video segmentation, where the goal is to generalize the model trained on the source domain to other unlabelled target domains. Existing UDA segmentation methods are not suitable for this task because they do not model local information and the cyclical consistency of heartbeat. In this paper, we introduce a newly collected CardiacUDA dataset and a novel GraphEcho method for cardiac structure segmentation. Our GraphEcho comprises two innovative modules, the Spatial-wise Cross-domain Graph Matching (SCGM) and the Temporal Cycle Consistency (TCC) module, which utilize prior knowledge of echocardiogram videos, i.e., consistent cardiac structure across patients and centers and the heartbeat cyclical consistency, respectively. These two modules can better align global and local features from source and target domains, improving UDA segmentation results. Experimental results showed that our GraphEcho outperforms existing state-of-the-art UDA segmentation methods. Our collected dataset and code will be publicly released upon acceptance. This work will lay a new and solid cornerstone for cardiac structure segmentation from echocardiogram videos. Code and dataset are available at: https://github.com/xmed-lab/GraphEcho

BNS-Net: A Dual-channel Sarcasm Detection Method Considering Behavior-level and Sentence-level Conflicts

Sarcasm detection is a binary classification task that aims to determine whether a given utterance is sarcastic. Over the past decade, sarcasm detection has evolved from classical pattern recognition to deep learning approaches, where features such as user profile, punctuation and sentiment words have been commonly employed for sarcasm detection. In real-life sarcastic expressions, behaviors without explicit sentimental cues often serve as carriers of implicit sentimental meanings. Motivated by this observation, we proposed a dual-channel sarcasm detection model named BNS-Net. The model considers behavior and sentence conflicts in two channels. Channel 1: Behavior-level Conflict Channel reconstructs the text based on core verbs while leveraging the modified attention mechanism to highlight conflict information. Channel 2: Sentence-level Conflict Channel introduces external sentiment knowledge to segment the text into explicit and implicit sentences, capturing conflicts between them. To validate the effectiveness of BNS-Net, several comparative and ablation experiments are conducted on three public sarcasm datasets. The analysis and evaluation of experimental results demonstrate that the BNS-Net effectively identifies sarcasm in text and achieves the state-of-the-art performance.

How to Efficiently Adapt Large Segmentation Model(SAM) to Medical Images

The emerging scale segmentation model, Segment Anything (SAM), exhibits impressive capabilities in zero-shot segmentation for natural images. However, when applied to medical images, SAM suffers from noticeable performance drop. To make SAM a real ``foundation model" for the computer vision community, it is critical to find an efficient way to customize SAM for medical image dataset. In this work, we propose to freeze SAM encoder and finetune a lightweight task-specific prediction head, as most of weights in SAM are contributed by the encoder. In addition, SAM is a promptable model, while prompt is not necessarily available in all application cases, and precise prompts for multiple class segmentation are also time-consuming. Therefore, we explore three types of prompt-free prediction heads in this work, include ViT, CNN, and linear layers. For ViT head, we remove the prompt tokens in the mask decoder of SAM, which is named AutoSAM. AutoSAM can also generate masks for different classes with one single inference after modification. To evaluate the label-efficiency of our finetuning method, we compare the results of these three prediction heads on a public medical image segmentation dataset with limited labeled data. Experiments demonstrate that finetuning SAM significantly improves its performance on medical image dataset, even with just one labeled volume. Moreover, AutoSAM and CNN prediction head also has better segmentation accuracy than training from scratch and self-supervised learning approaches when there is a shortage of annotations.