TableGPT2: A Large Multimodal Model with Tabular Data Integration

The emergence of models like GPTs, Claude, LLaMA, and Qwen has reshaped AI applications, presenting vast new opportunities across industries. Yet, the integration of tabular data remains notably underdeveloped, despite its foundational role in numerous real-world domains. This gap is critical for three main reasons. First, database or data warehouse data integration is essential for advanced applications; second, the vast and largely untapped resource of tabular data offers immense potential for analysis; and third, the business intelligence domain specifically demands adaptable, precise solutions that many current LLMs may struggle to provide. In response, we introduce TableGPT2, a model rigorously pre-trained and fine-tuned with over 593.8K tables and 2.36M high-quality query-table-output tuples, a scale of table-related data unprecedented in prior research. This extensive training enables TableGPT2 to excel in table-centric tasks while maintaining strong general language and coding abilities. One of TableGPT2's key innovations is its novel table encoder, specifically designed to capture schema-level and cell-level information. This encoder strengthens the model's ability to handle ambiguous queries, missing column names, and irregular tables commonly encountered in real-world applications. Similar to visual language models, this pioneering approach integrates with the decoder to form a robust large multimodal model. We believe the results are compelling: over 23 benchmarking metrics, TableGPT2 achieves an average performance improvement of 35.20% in the 7B model and 49.32% in the 72B model over prior benchmark-neutral LLMs, with robust general-purpose capabilities intact.

CryoFM: A Flow-based Foundation Model for Cryo-EM Densities

Cryo-electron microscopy (cryo-EM) is a powerful technique in structural biology and drug discovery, enabling the study of biomolecules at high resolution. Significant advancements by structural biologists using cryo-EM have led to the production of over 38,626 protein density maps at various resolutions1. However, cryo-EM data processing algorithms have yet to fully benefit from our knowledge of biomolecular density maps, with only a few recent models being data-driven but limited to specific tasks. In this study, we present CryoFM, a foundation model designed as a generative model, learning the distribution of high-quality density maps and generalizing effectively to downstream tasks. Built on flow matching, CryoFM is trained to accurately capture the prior distribution of biomolecular density maps. Furthermore, we introduce a flow posterior sampling method that leverages CRYOFM as a flexible prior for several downstream tasks in cryo-EM and cryo-electron tomography (cryo-ET) without the need for fine-tuning, achieving state-of-the-art performance on most tasks and demonstrating its potential as a foundational model for broader applications in these fields.

Learning Submodular Sequencing from Samples

This paper addresses the problem of sequential submodular maximization: selecting and ranking items in a sequence to optimize some composite submodular function. In contrast to most of the previous works, which assume access to the utility function, we assume that we are given only a set of samples. Each sample includes a random sequence of items and its associated utility. We present an algorithm that, given polynomially many samples drawn from a two-stage uniform distribution, achieves an approximation ratio dependent on the curvature of individual submodular functions. Our results apply in a wide variety of real-world scenarios, such as ranking products in online retail platforms, where complete knowledge of the utility function is often impossible to obtain. Our algorithm gives an empirically useful solution in such contexts, thus proving that limited data can be of great use in sequencing tasks. From a technical perspective, our results extend prior work on ``optimization from samples'' by generalizing from optimizing a set function to a sequence-dependent function.

The Power of Second Chance: Personalized Submodular Maximization with Two Candidates

Most of existing studies on submodular maximization focus on selecting a subset of items that maximizes a \emph{single} submodular function. However, in many real-world scenarios, we might have multiple user-specific functions, each of which models the utility of a particular type of user. In these settings, our goal would be to choose a set of items that performs well across all the user-specific functions. One way to tackle this problem is to select a single subset that maximizes the sum of all of the user-specific functions. Although this aggregate approach is efficient in the sense that it avoids computation of sets for individual functions, it really misses the power of personalization - for it does not allow to choose different sets for different functions. In this paper, we introduce the problem of personalized submodular maximization with two candidate solutions. For any two candidate solutions, the utility of each user-specific function is defined as the better of these two candidates. Our objective is, therefore, to select the best set of two candidates that maximize the sum of utilities of all the user-specific functions. We have designed effective algorithms for this problem. We also discuss how our approach generalizes to multiple candidate solutions, increasing flexibility and personalization in our solution.

Size Aware Cross-shape Scribble Supervision for Medical Image Segmentation

Scribble supervision, a common form of weakly supervised learning, involves annotating pixels using hand-drawn curve lines, which helps reduce the cost of manual labelling. This technique has been widely used in medical image segmentation tasks to fasten network training. However, scribble supervision has limitations in terms of annotation consistency across samples and the availability of comprehensive groundtruth information. Additionally, it often grapples with the challenge of accommodating varying scale targets, particularly in the context of medical images. In this paper, we propose three novel methods to overcome these challenges, namely, 1) the cross-shape scribble annotation method; 2) the pseudo mask method based on cross shapes; and 3) the size-aware multi-branch method. The parameter and structure design are investigated in depth. Experimental results show that the proposed methods have achieved significant improvement in mDice scores across multiple polyp datasets. Notably, the combination of these methods outperforms the performance of state-of-the-art scribble supervision methods designed for medical image segmentation.

Mean Height Aided Post-Processing for Pedestrian Detection

The design of pedestrian detectors seldom considers the unique characteristics of this task and usually follows the common strategies for general object detection. To explore the potential of these characteristics, we take the perspective effect in pedestrian datasets as an example and propose the mean height aided suppression for post-processing. This method rejects predictions that fall at levels with a low possibility of containing any pedestrians or that have an abnormal height compared to the average. To achieve this, the existence score and mean height generators are proposed. Comprehensive experiments on various datasets and detectors are performed; the choice of hyper-parameters is discussed in depth. The proposed method is easy to implement and is plug-and-play. Results show that the proposed methods significantly improve detection accuracy when applied to different existing pedestrian detectors and datasets. The combination of mean height aided suppression with particular detectors outperforms state-of-the-art pedestrian detectors on Caltech and Citypersons datasets.

Submodular Participatory Budgeting

Participatory budgeting refers to the practice of allocating public resources by collecting and aggregating individual preferences. Most existing studies in this field often assume an additive utility function, where each individual holds a private utility for each candidate project, and the total utility of a set of funded projects is simply the sum of the utilities of all projects. We argue that this assumption does not always hold in reality. For example, building two playgrounds in the same neighborhood does not necessarily lead to twice the utility of building a single playground. To address this, we extend the existing study by proposing a submodular participatory budgeting problem, assuming that the utility function of each individual is a monotone and submodular function over funded projects. We propose and examine three preference elicitation methods, including \emph{ranking-by-marginal-values}, \emph{ranking-by-values} and \emph{threshold approval votes}, and analyze their performances in terms of distortion. Notably, if the utility function is addicative, our aggregation rule designed for threshold approval votes achieves a better distortion than the state-of-the-art approach.

Assortment Planning with Sponsored Products

In the rapidly evolving landscape of retail, assortment planning plays a crucial role in determining the success of a business. With the rise of sponsored products and their increasing prominence in online marketplaces, retailers face new challenges in effectively managing their product assortment in the presence of sponsored products. Remarkably, previous research in assortment planning largely overlooks the existence of sponsored products and their potential impact on overall recommendation effectiveness. Instead, they commonly make the simplifying assumption that all products are either organic or non-sponsored. This research gap underscores the necessity for a more thorough investigation of the assortment planning challenge when sponsored products are in play. We formulate the assortment planning problem in the presence of sponsored products as a combinatorial optimization task. The ultimate objective is to compute an assortment plan that optimizes expected revenue while considering the specific requirements of placing sponsored products strategically.

Non-monotone Sequential Submodular Maximization

In this paper, we study a fundamental problem in submodular optimization, which is called sequential submodular maximization. Specifically, we aim to select and rank a group of $k$ items from a ground set $V$ such that the weighted summation of $k$ (possibly non-monotone) submodular functions $f_1, \cdots ,f_k: 2^V \rightarrow \mathbb{R}^+$ is maximized, here each function $f_j$ takes the first $j$ items from this sequence as input. The existing research on sequential submodular maximization has predominantly concentrated on the monotone setting, assuming that the submodular functions are non-decreasing. However, in various real-world scenarios, like diversity-aware recommendation systems, adding items to an existing set might negatively impact the overall utility. In response, this paper pioneers the examination of the aforementioned problem with non-monotone submodular functions and offers effective solutions for both flexible and fixed length constraints, as well as a special case with identical utility functions. The empirical evaluations further validate the effectiveness of our proposed algorithms in the domain of video recommendations. The results of this research have implications in various fields, including recommendation systems and assortment optimization, where the ordering of items significantly impacts the overall value obtained.

TableGPT: Towards Unifying Tables, Nature Language and Commands into One GPT

Tables are prevalent in real-world databases, requiring significant time and effort for humans to analyze and manipulate. The advancements in large language models (LLMs) have made it possible to interact with tables using natural language input, bringing this capability closer to reality. In this paper, we present TableGPT, a unified fine-tuned framework that enables LLMs to understand and operate on tables using external functional commands. It introduces the capability to seamlessly interact with tables, enabling a wide range of functionalities such as question answering, data manipulation (e.g., insert, delete, query, and modify operations), data visualization, analysis report generation, and automated prediction. TableGPT aims to provide convenience and accessibility to users by empowering them to effortlessly leverage tabular data. At the core of TableGPT lies the novel concept of global tabular representations, which empowers LLMs to gain a comprehensive understanding of the entire table beyond meta-information. By jointly training LLMs on both table and text modalities, TableGPT achieves a deep understanding of tabular data and the ability to perform complex operations on tables through chain-of-command instructions. Importantly, TableGPT offers the advantage of being a self-contained system rather than relying on external API interfaces. Moreover, it supports efficient data process flow, query rejection (when appropriate) and private deployment, enabling faster domain data fine-tuning and ensuring data privacy, which enhances the framework's adaptability to specific use cases.