Towards Understanding Fine-Tuning Mechanisms of LLMs via Circuit Analysis

Fine-tuning significantly improves the performance of Large Language Models (LLMs), yet its underlying mechanisms remain poorly understood. This paper aims to provide an in-depth interpretation of the fine-tuning process through circuit analysis, a popular tool in Mechanistic Interpretability (MI). Unlike previous studies \cite{prakash2024finetuningenhancesexistingmechanisms,chhabra2024neuroplasticity} that focus on tasks where pre-trained models already perform well, we develop a set of mathematical tasks where fine-tuning yields substantial performance gains, which are closer to the practical setting. In our experiments, we identify circuits at various checkpoints during fine-tuning and examine the interplay between circuit analysis, fine-tuning methods, and task complexities. First, we find that while circuits maintain high node similarity before and after fine-tuning, their edges undergo significant changes, which is in contrast to the previous work \cite{prakash2024finetuningenhancesexistingmechanisms,chhabra2024neuroplasticity} that show circuits only add some additional components after fine-tuning. Based on these observations, we develop a circuit-aware Low-Rank Adaptation (LoRA) method, which assigns ranks to layers based on edge changes in the circuits. Experimental results demonstrate that our circuit-based LoRA algorithm achieves an average performance improvement of 2.46\% over standard LoRA with similar parameter sizes. Furthermore, we explore how combining circuits from subtasks can enhance fine-tuning in compositional tasks, providing new insights into the design of such tasks and deepening the understanding of circuit dynamics and fine-tuning mechanisms.

Hyperspherical Energy Transformer with Recurrent Depth

Transformer-based foundation models have achieved unprecedented success with a gigantic amount of parameters and computational resources. Yet, the core building blocks of these models, the Transformer layers, and how they are arranged and configured are primarily engineered from the bottom up and driven by heuristics. For advancing next-generation architectures, it demands exploring a prototypical model that is amenable to high interpretability and of practical competence. To this end, we take a step from the top-down view and design neural networks from an energy minimization perspective. Specifically, to promote isotropic token distribution on the sphere, we formulate a modified Hopfield energy function on the subspace-embedded hypersphere, based on which Transformer layers with symmetric structures are designed as the iterative optimization for the energy function. By integrating layers with the same parameters, we propose \textit{Hyper-Spherical Energy Transformer} (Hyper-SET), an alternative to the vanilla Transformer with recurrent depth. This design inherently provides greater interpretability and allows for scaling to deeper layers without a significant increase in the number of parameters. We also empirically demonstrate that Hyper-SET achieves comparable or even superior performance on both synthetic and real-world tasks, such as solving Sudoku and masked image modeling, while utilizing fewer parameters.

Can Diffusion Models Learn Hidden Inter-Feature Rules Behind Images?

Despite the remarkable success of diffusion models (DMs) in data generation, they exhibit specific failure cases with unsatisfactory outputs. We focus on one such limitation: the ability of DMs to learn hidden rules between image features. Specifically, for image data with dependent features ($\mathbf{x}$) and ($\mathbf{y}$) (e.g., the height of the sun ($\mathbf{x}$) and the length of the shadow ($\mathbf{y}$)), we investigate whether DMs can accurately capture the inter-feature rule ($p(\mathbf{y}|\mathbf{x})$). Empirical evaluations on mainstream DMs (e.g., Stable Diffusion 3.5) reveal consistent failures, such as inconsistent lighting-shadow relationships and mismatched object-mirror reflections. Inspired by these findings, we design four synthetic tasks with strongly correlated features to assess DMs' rule-learning abilities. Extensive experiments show that while DMs can identify coarse-grained rules, they struggle with fine-grained ones. Our theoretical analysis demonstrates that DMs trained via denoising score matching (DSM) exhibit constant errors in learning hidden rules, as the DSM objective is not compatible with rule conformity. To mitigate this, we introduce a common technique - incorporating additional classifier guidance during sampling, which achieves (limited) improvements. Our analysis reveals that the subtle signals of fine-grained rules are challenging for the classifier to capture, providing insights for future exploration.

Masked Autoencoders Are Effective Tokenizers for Diffusion Models

Recent advances in latent diffusion models have demonstrated their effectiveness for high-resolution image synthesis. However, the properties of the latent space from tokenizer for better learning and generation of diffusion models remain under-explored. Theoretically and empirically, we find that improved generation quality is closely tied to the latent distributions with better structure, such as the ones with fewer Gaussian Mixture modes and more discriminative features. Motivated by these insights, we propose MAETok, an autoencoder (AE) leveraging mask modeling to learn semantically rich latent space while maintaining reconstruction fidelity. Extensive experiments validate our analysis, demonstrating that the variational form of autoencoders is not necessary, and a discriminative latent space from AE alone enables state-of-the-art performance on ImageNet generation using only 128 tokens. MAETok achieves significant practical improvements, enabling a gFID of 1.69 with 76x faster training and 31x higher inference throughput for 512x512 generation. Our findings show that the structure of the latent space, rather than variational constraints, is crucial for effective diffusion models. Code and trained models are released.

SWE-Fixer: Training Open-Source LLMs for Effective and Efficient GitHub Issue Resolution

Large Language Models (LLMs) have demonstrated remarkable proficiency across a variety of complex tasks. One significant application of LLMs is in tackling software engineering challenges, particularly in resolving real-world tasks on GitHub by fixing code based on the issues reported by the users. However, many current approaches rely on proprietary LLMs, which limits reproducibility, accessibility, and transparency. The critical components of LLMs for addressing software engineering issues and how their capabilities can be effectively enhanced remain unclear. To address these challenges, we introduce SWE-Fixer, a novel open-source LLM designed to effectively and efficiently resolve GitHub issues. SWE-Fixer comprises two essential modules: a code file retrieval module and a code editing module. The retrieval module employs BM25 along with a lightweight LLM model to achieve coarse-to-fine file retrieval. Subsequently, the code editing module utilizes the other LLM model to generate patches for the identified files. Then, to mitigate the lack of publicly available datasets, we compile an extensive dataset that includes 110K GitHub issues along with their corresponding patches, and train the two modules of SWE-Fixer separately. We assess our approach on the SWE-Bench Lite and Verified benchmarks, achieving state-of-the-art performance among open-source models with scores of 23.3% and 30.2%, respectively. These outcomes highlight the efficacy of our approach. We will make our model, dataset, and code publicly available at https://github.com/InternLM/SWE-Fixer.

Parallelized Autoregressive Visual Generation

Autoregressive models have emerged as a powerful approach for visual generation but suffer from slow inference speed due to their sequential token-by-token prediction process. In this paper, we propose a simple yet effective approach for parallelized autoregressive visual generation that improves generation efficiency while preserving the advantages of autoregressive modeling. Our key insight is that parallel generation depends on visual token dependencies-tokens with weak dependencies can be generated in parallel, while strongly dependent adjacent tokens are difficult to generate together, as their independent sampling may lead to inconsistencies. Based on this observation, we develop a parallel generation strategy that generates distant tokens with weak dependencies in parallel while maintaining sequential generation for strongly dependent local tokens. Our approach can be seamlessly integrated into standard autoregressive models without modifying the architecture or tokenizer. Experiments on ImageNet and UCF-101 demonstrate that our method achieves a 3.6x speedup with comparable quality and up to 9.5x speedup with minimal quality degradation across both image and video generation tasks. We hope this work will inspire future research in efficient visual generation and unified autoregressive modeling. Project page: https://epiphqny.github.io/PAR-project.

On the Feature Learning in Diffusion Models

The predominant success of diffusion models in generative modeling has spurred significant interest in understanding their theoretical foundations. In this work, we propose a feature learning framework aimed at analyzing and comparing the training dynamics of diffusion models with those of traditional classification models. Our theoretical analysis demonstrates that, under identical settings, diffusion models, due to the denoising objective, are encouraged to learn more balanced and comprehensive representations of the data. In contrast, neural networks with a similar architecture trained for classification tend to prioritize learning specific patterns in the data, often focusing on easy-to-learn components. To support these theoretical insights, we conduct several experiments on both synthetic and real-world datasets, which empirically validate our findings and highlight the distinct feature learning dynamics in diffusion models compared to classification.

Beyond Surface Structure: A Causal Assessment of LLMs' Comprehension Ability

Large language models (LLMs) have shown remarkable capability in natural language tasks, yet debate persists on whether they truly comprehend deep structure (i.e., core semantics) or merely rely on surface structure (e.g., presentation format). Prior studies observe that LLMs' performance declines when intervening on surface structure, arguing their success relies on surface structure recognition. However, surface structure sensitivity does not prevent deep structure comprehension. Rigorously evaluating LLMs' capability requires analyzing both, yet deep structure is often overlooked. To this end, we assess LLMs' comprehension ability using causal mediation analysis, aiming to fully discover the capability of using both deep and surface structures. Specifically, we formulate the comprehension of deep structure as direct causal effect (DCE) and that of surface structure as indirect causal effect (ICE), respectively. To address the non-estimability of original DCE and ICE -- stemming from the infeasibility of isolating mutual influences of deep and surface structures, we develop the corresponding quantifiable surrogates, including approximated DCE (ADCE) and approximated ICE (AICE). We further apply the ADCE to evaluate a series of mainstream LLMs, showing that most of them exhibit deep structure comprehension ability, which grows along with the prediction accuracy. Comparing ADCE and AICE demonstrates closed-source LLMs rely more on deep structure, while open-source LLMs are more surface-sensitive, which decreases with model scale. Theoretically, ADCE is a bidirectional evaluation, which measures both the sufficiency and necessity of deep structure changes in causing output variations, thus offering a more comprehensive assessment than accuracy, a common evaluation in LLMs. Our work provides new insights into LLMs' deep structure comprehension and offers novel methods for LLMs evaluation.

An In-depth Investigation of Sparse Rate Reduction in Transformer-like Models

Deep neural networks have long been criticized for being black-box. To unveil the inner workings of modern neural architectures, a recent work \cite{yu2024white} proposed an information-theoretic objective function called Sparse Rate Reduction (SRR) and interpreted its unrolled optimization as a Transformer-like model called Coding Rate Reduction Transformer (CRATE). However, the focus of the study was primarily on the basic implementation, and whether this objective is optimized in practice and its causal relationship to generalization remain elusive. Going beyond this study, we derive different implementations by analyzing layer-wise behaviors of CRATE, both theoretically and empirically. To reveal the predictive power of SRR on generalization, we collect a set of model variants induced by varied implementations and hyperparameters and evaluate SRR as a complexity measure based on its correlation with generalization. Surprisingly, we find out that SRR has a positive correlation coefficient and outperforms other baseline measures, such as path-norm and sharpness-based ones. Furthermore, we show that generalization can be improved using SRR as regularization on benchmark image classification datasets. We hope this paper can shed light on leveraging SRR to design principled models and study their generalization ability.

How Does Critical Batch Size Scale in Pre-training?

Training large-scale models under given resources requires careful design of parallelism strategies. In particular, the efficiency notion of critical batch size, concerning the compromise between time and compute, marks the threshold beyond which greater data parallelism leads to diminishing returns. To operationalize it, we propose a measure of CBS and pre-train a series of auto-regressive language models, ranging from 85 million to 1.2 billion parameters, on the C4 dataset. Through extensive hyper-parameter sweeps and careful control on factors such as batch size, momentum, and learning rate along with its scheduling, we systematically investigate the impact of scale on CBS. Then we fit scaling laws with respect to model and data sizes to decouple their effects. Overall, our results demonstrate that CBS scales primarily with data size rather than model size, a finding we justify theoretically through the analysis of infinite-width limits of neural networks and infinite-dimensional least squares regression. Of independent interest, we highlight the importance of common hyper-parameter choices and strategies for studying large-scale pre-training beyond fixed training durations.