scAgent: Universal Single-Cell Annotation via a LLM Agent

Cell type annotation is critical for understanding cellular heterogeneity. Based on single-cell RNA-seq data and deep learning models, good progress has been made in annotating a fixed number of cell types within a specific tissue. However, universal cell annotation, which can generalize across tissues, discover novel cell types, and extend to novel cell types, remains less explored. To fill this gap, this paper proposes scAgent, a universal cell annotation framework based on Large Language Models (LLMs). scAgent can identify cell types and discover novel cell types in diverse tissues; furthermore, it is data efficient to learn novel cell types. Experimental studies in 160 cell types and 35 tissues demonstrate the superior performance of scAgent in general cell-type annotation, novel cell discovery, and extensibility to novel cell type.

Effective and Efficient Cross-City Traffic Knowledge Transfer A Privacy-Preserving Perspective

Traffic prediction targets forecasting future traffic conditions using historical traffic data, serving a critical role in urban computing and transportation management. To mitigate the scarcity of traffic data while maintaining data privacy, numerous Federated Traffic Knowledge Transfer (FTT) approaches have been developed, which use transfer learning and federated learning to transfer traffic knowledge from data-rich cities to data-scarce cities, enhancing traffic prediction capabilities for the latter. However, current FTT approaches face challenges such as privacy leakage, cross-city data distribution discrepancies, low data quality, and inefficient knowledge transfer, limiting their privacy protection, effectiveness, robustness, and efficiency in real-world applications. To this end, we propose FedTT, an effective, efficient, and privacy-aware cross-city traffic knowledge transfer framework that transforms the traffic data domain from the data-rich cities and trains traffic models using the transformed data for the data-scarce cities. First, to safeguard data privacy, we propose a traffic secret transmission method that securely transmits and aggregates traffic domain-transformed data from source cities using a lightweight secret aggregation approach. Second, to mitigate the impact of traffic data distribution discrepancies on model performance, we introduce a traffic domain adapter to uniformly transform traffic data from the source cities' domains to that of the target city. Third, to improve traffic data quality, we design a traffic view imputation method to fill in and predict missing traffic data. Finally, to enhance transfer efficiency, FedTT is equipped with a federated parallel training method that enables the simultaneous training of multiple modules. Extensive experiments using 4 real-life datasets demonstrate that FedTT outperforms the 14 state-of-the-art baselines.

AIstorian lets AI be a historian: A KG-powered multi-agent system for accurate biography generation

Huawei has always been committed to exploring the AI application in historical research. Biography generation, as a specialized form of abstractive summarization, plays a crucial role in historical research but faces unique challenges that existing large language models (LLMs) struggle to address. These challenges include maintaining stylistic adherence to historical writing conventions, ensuring factual fidelity, and handling fragmented information across multiple documents. We present AIstorian, a novel end-to-end agentic system featured with a knowledge graph (KG)-powered retrieval-augmented generation (RAG) and anti-hallucination multi-agents. Specifically, AIstorian introduces an in-context learning based chunking strategy and a KG-based index for accurate and efficient reference retrieval. Meanwhile, AIstorian orchestrates multi-agents to conduct on-the-fly hallucination detection and error-type-aware correction. Additionally, to teach LLMs a certain language style, we finetune LLMs based on a two-step training approach combining data augmentation-enhanced supervised fine-tuning with stylistic preference optimization. Extensive experiments on a real-life historical Jinshi dataset demonstrate that AIstorian achieves a 3.8x improvement in factual accuracy and a 47.6% reduction in hallucination rate compared to existing baselines. The data and code are available at: https://github.com/ZJU-DAILY/AIstorian.

G-Boost: Boosting Private SLMs with General LLMs

Due to the limited computational resources, most Large Language Models (LLMs) developers can only fine-tune Small Language Models (SLMs) on their own data. These private SLMs typically have limited effectiveness. To boost the performance of private SLMs, this paper proposes to ask general LLMs for help. The general LLMs can be APIs or larger LLMs whose inference cost the developers can afford. Specifically, we propose the G-Boost framework where a private SLM adaptively performs collaborative inference with a general LLM under the guide of process reward. Experiments demonstrate that our framework can significantly boost the performance of private SLMs.

Snoopy: Effective and Efficient Semantic Join Discovery via Proxy Columns

Semantic join discovery, which aims to find columns in a table repository with high semantic joinabilities to a query column, is crucial for dataset discovery. Existing methods can be divided into two categories: cell-level methods and column-level methods. However, neither of them ensures both effectiveness and efficiency simultaneously. Cell-level methods, which compute the joinability by counting cell matches between columns, enjoy ideal effectiveness but suffer poor efficiency. In contrast, column-level methods, which determine joinability only by computing the similarity of column embeddings, enjoy proper efficiency but suffer poor effectiveness due to the issues occurring in their column embeddings: (i) semantics-joinability-gap, (ii) size limit, and (iii) permutation sensitivity. To address these issues, this paper proposes to compute column embeddings via proxy columns; furthermore, a novel column-level semantic join discovery framework, Snoopy, is presented, leveraging proxy-column-based embeddings to bridge effectiveness and efficiency. Specifically, the proposed column embeddings are derived from the implicit column-to-proxy-column relationships, which are captured by the lightweight approximate-graph-matching-based column projection.To acquire good proxy columns for guiding the column projection, we introduce a rank-aware contrastive learning paradigm. Extensive experiments on four real-world datasets demonstrate that Snoopy outperforms SOTA column-level methods by 16% in Recall@25 and 10% in NDCG@25, and achieves superior efficiency--being at least 5 orders of magnitude faster than cell-level solutions, and 3.5x faster than existing column-level methods.

How Much Can Time-related Features Enhance Time Series Forecasting?

Recent advancements in long-term time series forecasting (LTSF) have primarily focused on capturing cross-time and cross-variate (channel) dependencies within historical data. However, a critical aspect often overlooked by many existing methods is the explicit incorporation of \textbf{time-related features} (e.g., season, month, day of the week, hour, minute), which are essential components of time series data. The absence of this explicit time-related encoding limits the ability of current models to capture cyclical or seasonal trends and long-term dependencies, especially with limited historical input. To address this gap, we introduce a simple yet highly efficient module designed to encode time-related features, Time Stamp Forecaster (TimeSter), thereby enhancing the backbone's forecasting performance. By integrating TimeSter with a linear backbone, our model, TimeLinear, significantly improves the performance of a single linear projector, reducing MSE by an average of 23\% on benchmark datasets such as Electricity and Traffic. Notably, TimeLinear achieves these gains while maintaining exceptional computational efficiency, delivering results that are on par with or exceed state-of-the-art models, despite using a fraction of the parameters.

Navigating the Risks: A Survey of Security, Privacy, and Ethics Threats in LLM-Based Agents

With the continuous development of large language models (LLMs), transformer-based models have made groundbreaking advances in numerous natural language processing (NLP) tasks, leading to the emergence of a series of agents that use LLMs as their control hub. While LLMs have achieved success in various tasks, they face numerous security and privacy threats, which become even more severe in the agent scenarios. To enhance the reliability of LLM-based applications, a range of research has emerged to assess and mitigate these risks from different perspectives. To help researchers gain a comprehensive understanding of various risks, this survey collects and analyzes the different threats faced by these agents. To address the challenges posed by previous taxonomies in handling cross-module and cross-stage threats, we propose a novel taxonomy framework based on the sources and impacts. Additionally, we identify six key features of LLM-based agents, based on which we summarize the current research progress and analyze their limitations. Subsequently, we select four representative agents as case studies to analyze the risks they may face in practical use. Finally, based on the aforementioned analyses, we propose future research directions from the perspectives of data, methodology, and policy, respectively.

An Interactive Multi-modal Query Answering System with Retrieval-Augmented Large Language Models

Retrieval-augmented Large Language Models (LLMs) have reshaped traditional query-answering systems, offering unparalleled user experiences. However, existing retrieval techniques often struggle to handle multi-modal query contexts. In this paper, we present an interactive Multi-modal Query Answering (MQA) system, empowered by our newly developed multi-modal retrieval framework and navigation graph index, integrated with cutting-edge LLMs. It comprises five core components: Data Preprocessing, Vector Representation, Index Construction, Query Execution, and Answer Generation, all orchestrated by a dedicated coordinator to ensure smooth data flow from input to answer generation. One notable aspect of MQA is its utilization of contrastive learning to assess the significance of different modalities, facilitating precise measurement of multi-modal information similarity. Furthermore, the system achieves efficient retrieval through our advanced navigation graph index, refined using computational pruning techniques. Another highlight of our system is its pluggable processing framework, allowing seamless integration of embedding models, graph indexes, and LLMs. This flexibility provides users diverse options for gaining insights from their multi-modal knowledge base. A preliminary video introduction of MQA is available at https://youtu.be/xvUuo2ZIqWk.

A Benchmark Study of Deep-RL Methods for Maximum Coverage Problems over Graphs

Recent years have witnessed a growing trend toward employing deep reinforcement learning (Deep-RL) to derive heuristics for combinatorial optimization (CO) problems on graphs. Maximum Coverage Problem (MCP) and its probabilistic variant on social networks, Influence Maximization (IM), have been particularly prominent in this line of research. In this paper, we present a comprehensive benchmark study that thoroughly investigates the effectiveness and efficiency of five recent Deep-RL methods for MCP and IM. These methods were published in top data science venues, namely S2V-DQN, Geometric-QN, GCOMB, RL4IM, and LeNSE. Our findings reveal that, across various scenarios, the Lazy Greedy algorithm consistently outperforms all Deep-RL methods for MCP. In the case of IM, theoretically sound algorithms like IMM and OPIM demonstrate superior performance compared to Deep-RL methods in most scenarios. Notably, we observe an abnormal phenomenon in IM problem where Deep-RL methods slightly outperform IMM and OPIM when the influence spread nearly does not increase as the budget increases. Furthermore, our experimental results highlight common issues when applying Deep-RL methods to MCP and IM in practical settings. Finally, we discuss potential avenues for improving Deep-RL methods. Our benchmark study sheds light on potential challenges in current deep reinforcement learning research for solving combinatorial optimization problems.

Deep Learning for Trajectory Data Management and Mining: A Survey and Beyond

Trajectory computing is a pivotal domain encompassing trajectory data management and mining, garnering widespread attention due to its crucial role in various practical applications such as location services, urban traffic, and public safety. Traditional methods, focusing on simplistic spatio-temporal features, face challenges of complex calculations, limited scalability, and inadequate adaptability to real-world complexities. In this paper, we present a comprehensive review of the development and recent advances in deep learning for trajectory computing (DL4Traj). We first define trajectory data and provide a brief overview of widely-used deep learning models. Systematically, we explore deep learning applications in trajectory management (pre-processing, storage, analysis, and visualization) and mining (trajectory-related forecasting, trajectory-related recommendation, trajectory classification, travel time estimation, anomaly detection, and mobility generation). Notably, we encapsulate recent advancements in Large Language Models (LLMs) that hold the potential to augment trajectory computing. Additionally, we summarize application scenarios, public datasets, and toolkits. Finally, we outline current challenges in DL4Traj research and propose future directions. Relevant papers and open-source resources have been collated and are continuously updated at: \href{https://github.com/yoshall/Awesome-Trajectory-Computing}{DL4Traj Repo}.