Enhancing Text-to-SQL Capabilities of Large Language Models via Domain Database Knowledge Injection

Text-to-SQL is a subtask in semantic parsing that has seen rapid progress with the evolution of Large Language Models (LLMs). However, LLMs face challenges due to hallucination issues and a lack of domain-specific database knowledge(such as table schema and cell values). As a result, they can make errors in generating table names, columns, and matching values to the correct columns in SQL statements. This paper introduces a method of knowledge injection to enhance LLMs' ability to understand schema contents by incorporating prior knowledge. This approach improves their performance in Text-to-SQL tasks. Experimental results show that pre-training LLMs on domain-specific database knowledge and fine-tuning them on downstream Text-to-SQL tasks significantly improves the Execution Match (EX) and Exact Match (EM) metrics across various models. This effectively reduces errors in generating column names and matching values to the columns. Furthermore, the knowledge-injected models can be applied to many downstream Text-to-SQL tasks, demonstrating the generalizability of the approach presented in this paper.

The Quest for Early Detection of Retinal Disease: 3D CycleGAN-based Translation of Optical Coherence Tomography into Confocal Microscopy

Optical coherence tomography (OCT) and confocal microscopy are pivotal in retinal imaging, offering distinct advantages and limitations. In vivo OCT offers rapid, non-invasive imaging but can suffer from clarity issues and motion artifacts, while ex vivo confocal microscopy, providing high-resolution, cellular-detailed color images, is invasive and raises ethical concerns. To bridge the benefits of both modalities, we propose a novel framework based on unsupervised 3D CycleGAN for translating unpaired in vivo OCT to ex vivo confocal microscopy images. This marks the first attempt to exploit the inherent 3D information of OCT and translate it into the rich, detailed color domain of confocal microscopy. We also introduce a unique dataset, OCT2Confocal, comprising mouse OCT and confocal retinal images, facilitating the development of and establishing a benchmark for cross-modal image translation research. Our model has been evaluated both quantitatively and qualitatively, achieving Fr\'echet Inception Distance (FID) scores of 0.766 and Kernel Inception Distance (KID) scores as low as 0.153, and leading subjective Mean Opinion Scores (MOS). Our model demonstrated superior image fidelity and quality with limited data over existing methods. Our approach effectively synthesizes color information from 3D confocal images, closely approximating target outcomes and suggesting enhanced potential for diagnostic and monitoring applications in ophthalmology.

TaGAT: Topology-Aware Graph Attention Network For Multi-modal Retinal Image Fusion

In the realm of medical image fusion, integrating information from various modalities is crucial for improving diagnostics and treatment planning, especially in retinal health, where the important features exhibit differently in different imaging modalities. Existing deep learning-based approaches insufficiently focus on retinal image fusion, and thus fail to preserve enough anatomical structure and fine vessel details in retinal image fusion. To address this, we propose the Topology-Aware Graph Attention Network (TaGAT) for multi-modal retinal image fusion, leveraging a novel Topology-Aware Encoder (TAE) with Graph Attention Networks (GAT) to effectively enhance spatial features with retinal vasculature's graph topology across modalities. The TAE encodes the base and detail features, extracted via a Long-short Range (LSR) encoder from retinal images, into the graph extracted from the retinal vessel. Within the TAE, the GAT-based Graph Information Update (GIU) block dynamically refines and aggregates the node features to generate topology-aware graph features. The updated graph features with base and detail features are combined and decoded as a fused image. Our model outperforms state-of-the-art methods in Fluorescein Fundus Angiography (FFA) with Color Fundus (CF) and Optical Coherence Tomography (OCT) with confocal microscopy retinal image fusion. The source code can be accessed via https://github.com/xintian-99/TaGAT.

Hybrid Spatial-spectral Neural Network for Hyperspectral Image Denoising

Hyperspectral image (HSI) denoising is an essential procedure for HSI applications. Unfortunately, the existing Transformer-based methods mainly focus on non-local modeling, neglecting the importance of locality in image denoising. Moreover, deep learning methods employ complex spectral learning mechanisms, thus introducing large computation costs. To address these problems, we propose a hybrid spatial-spectral denoising network (HSSD), in which we design a novel hybrid dual-path network inspired by CNN and Transformer characteristics, leading to capturing both local and non-local spatial details while suppressing noise efficiently. Furthermore, to reduce computational complexity, we adopt a simple but effective decoupling strategy that disentangles the learning of space and spectral channels, where multilayer perception with few parameters is utilized to learn the global correlations among spectra. The synthetic and real experiments demonstrate that our proposed method outperforms state-of-the-art methods on spatial and spectral reconstruction. The code and details are available on https://github.com/HLImg/HSSD.

OCT2Confocal: 3D CycleGAN based Translation of Retinal OCT Images to Confocal Microscopy

Optical coherence tomography (OCT) and confocal microscopy are pivotal in retinal imaging, each presenting unique benefits and limitations. In vivo OCT offers rapid, non-invasive imaging but can be hampered by clarity issues and motion artifacts. Ex vivo confocal microscopy provides high-resolution, cellular detailed color images but is invasive and poses ethical concerns and potential tissue damage. To bridge these modalities, we developed a 3D CycleGAN framework for unsupervised translation of in vivo OCT to ex vivo confocal microscopy images. Applied to our OCT2Confocal dataset, this framework effectively translates between 3D medical data domains, capturing vascular, textural, and cellular details with precision. This marks the first attempt to exploit the inherent 3D information of OCT and translate it into the rich, detailed color domain of confocal microscopy. Assessed through quantitative and qualitative metrics, the 3D CycleGAN framework demonstrates commendable image fidelity and quality, outperforming existing methods despite the constraints of limited data. This non-invasive generation of retinal confocal images has the potential to further enhance diagnostic and monitoring capabilities in ophthalmology.

A Canonical Data Transformation for Achieving Inter- and Within-group Fairness

Increases in the deployment of machine learning algorithms for applications that deal with sensitive data have brought attention to the issue of fairness in machine learning. Many works have been devoted to applications that require different demographic groups to be treated fairly. However, algorithms that aim to satisfy inter-group fairness (also called group fairness) may inadvertently treat individuals within the same demographic group unfairly. To address this issue, we introduce a formal definition of within-group fairness that maintains fairness among individuals from within the same group. We propose a pre-processing framework to meet both inter- and within-group fairness criteria with little compromise in accuracy. The framework maps the feature vectors of members from different groups to an inter-group-fair canonical domain before feeding them into a scoring function. The mapping is constructed to preserve the relative relationship between the scores obtained from the unprocessed feature vectors of individuals from the same demographic group, guaranteeing within-group fairness. We apply this framework to the COMPAS risk assessment and Law School datasets and compare its performance in achieving inter-group and within-group fairness to two regularization-based methods.

Query Enhanced Knowledge-Intensive Conversation via Unsupervised Joint Modeling

The quality of knowledge retrieval is crucial in knowledge-intensive conversations. Two common strategies to improve the retrieval quality are finetuning the retriever or generating a self-contained query, while they encounter heavy burdens on expensive computation and elaborate annotations. In this paper, we propose an unsupervised query enhanced approach for knowledge-intensive conversations, namely QKConv. There are three modules in QKConv: a query generator, an off-the-shelf knowledge selector, and a response generator. Without extra supervision, the end-to-end joint training of QKConv explores multiple candidate queries and utilizes corresponding selected knowledge to yield the target response. To evaluate the effectiveness of the proposed method, we conducted comprehensive experiments on conversational question-answering, task-oriented dialogue, and knowledge-grounded conversation. Experimental results demonstrate that QKConv achieves state-of-the-art performance compared to unsupervised methods and competitive performance compared to supervised methods.

Q-TOD: A Query-driven Task-oriented Dialogue System

Existing pipelined task-oriented dialogue systems usually have difficulties adapting to unseen domains, whereas end-to-end systems are plagued by large-scale knowledge bases in practice. In this paper, we introduce a novel query-driven task-oriented dialogue system, namely Q-TOD. The essential information from the dialogue context is extracted into a query, which is further employed to retrieve relevant knowledge records for response generation. Firstly, as the query is in the form of natural language and not confined to the schema of the knowledge base, the issue of domain adaption is alleviated remarkably in Q-TOD. Secondly, as the query enables the decoupling of knowledge retrieval from the generation, Q-TOD gets rid of the issue of knowledge base scalability. To evaluate the effectiveness of the proposed Q-TOD, we collect query annotations for three publicly available task-oriented dialogue datasets. Comprehensive experiments verify that Q-TOD outperforms strong baselines and establishes a new state-of-the-art performance on these datasets.

Bi-directional Object-context Prioritization Learning for Saliency Ranking

The saliency ranking task is recently proposed to study the visual behavior that humans would typically shift their attention over different objects of a scene based on their degrees of saliency. Existing approaches focus on learning either object-object or object-scene relations. Such a strategy follows the idea of object-based attention in Psychology, but it tends to favor those objects with strong semantics (e.g., humans), resulting in unrealistic saliency ranking. We observe that spatial attention works concurrently with object-based attention in the human visual recognition system. During the recognition process, the human spatial attention mechanism would move, engage, and disengage from region to region (i.e., context to context). This inspires us to model the region-level interactions, in addition to the object-level reasoning, for saliency ranking. To this end, we propose a novel bi-directional method to unify spatial attention and object-based attention for saliency ranking. Our model includes two novel modules: (1) a selective object saliency (SOS) module that models objectbased attention via inferring the semantic representation of the salient object, and (2) an object-context-object relation (OCOR) module that allocates saliency ranks to objects by jointly modeling the object-context and context-object interactions of the salient objects. Extensive experiments show that our approach outperforms existing state-of-theart methods. Our code and pretrained model are available at https://github.com/GrassBro/OCOR.

Optimal Transport-based Graph Matching for 3D retinal OCT image registration

Registration of longitudinal optical coherence tomography (OCT) images assists disease monitoring and is essential in image fusion applications. Mouse retinal OCT images are often collected for longitudinal study of eye disease models such as uveitis, but their quality is often poor compared with human imaging. This paper presents a novel but efficient framework involving an optimal transport based graph matching (OT-GM) method for 3D mouse OCT image registration. We first perform registration of fundus-like images obtained by projecting all b-scans of a volume on a plane orthogonal to them, hereafter referred to as the x-y plane. We introduce Adaptive Weighted Vessel Graph Descriptors (AWVGD) and 3D Cube Descriptors (CD) to identify the correspondence between nodes of graphs extracted from segmented vessels within the OCT projection images. The AWVGD comprises scaling, translation and rotation, which are computationally efficient, whereas CD exploits 3D spatial and frequency domain information. The OT-GM method subsequently performs the correct alignment in the x-y plane. Finally, registration along the direction orthogonal to the x-y plane (the z-direction) is guided by the segmentation of two important anatomical features peculiar to mouse b-scans, the Internal Limiting Membrane (ILM) and the hyaloid remnant (HR). Both subjective and objective evaluation results demonstrate that our framework outperforms other well-established methods on mouse OCT images within a reasonable execution time.