Revisiting Automatic Data Curation for Vision Foundation Models in Digital Pathology

Vision foundation models (FMs) are accelerating the development of digital pathology algorithms and transforming biomedical research. These models learn, in a self-supervised manner, to represent histological features in highly heterogeneous tiles extracted from whole-slide images (WSIs) of real-world patient samples. The performance of these FMs is significantly influenced by the size, diversity, and balance of the pre-training data. However, data selection has been primarily guided by expert knowledge at the WSI level, focusing on factors such as disease classification and tissue types, while largely overlooking the granular details available at the tile level. In this paper, we investigate the potential of unsupervised automatic data curation at the tile-level, taking into account 350 million tiles. Specifically, we apply hierarchical clustering trees to pre-extracted tile embeddings, allowing us to sample balanced datasets uniformly across the embedding space of the pretrained FM. We further identify these datasets are subject to a trade-off between size and balance, potentially compromising the quality of representations learned by FMs, and propose tailored batch sampling strategies to mitigate this effect. We demonstrate the effectiveness of our method through improved performance on a diverse range of clinically relevant downstream tasks.

OSLO-IC: On-the-Sphere Learned Omnidirectional Image Compression with Attention Modules and Spatial Context

Developing effective 360-degree (spherical) image compression techniques is crucial for technologies like virtual reality and automated driving. This paper advances the state-of-the-art in on-the-sphere learning (OSLO) for omnidirectional image compression framework by proposing spherical attention modules, residual blocks, and a spatial autoregressive context model. These improvements achieve a 23.1% bit rate reduction in terms of WS-PSNR BD rate. Additionally, we introduce a spherical transposed convolution operator for upsampling, which reduces trainable parameters by a factor of four compared to the pixel shuffling used in the OSLO framework, while maintaining similar compression performance. Therefore, in total, our proposed method offers significant rate savings with a smaller architecture and can be applied to any spherical convolutional application.

How compositional generalization and creativity improve as diffusion models are trained

Natural data is often organized as a hierarchical composition of features. How many samples do generative models need to learn the composition rules, so as to produce a combinatorial number of novel data? What signal in the data is exploited to learn? We investigate these questions both theoretically and empirically. Theoretically, we consider diffusion models trained on simple probabilistic context-free grammars - tree-like graphical models used to represent the structure of data such as language and images. We demonstrate that diffusion models learn compositional rules with the sample complexity required for clustering features with statistically similar context, a process similar to the word2vec algorithm. However, this clustering emerges hierarchically: higher-level, more abstract features associated with longer contexts require more data to be identified. This mechanism leads to a sample complexity that scales polynomially with the said context size. As a result, diffusion models trained on intermediate dataset size generate data coherent up to a certain scale, but that lacks global coherence. We test these predictions in different domains, and find remarkable agreement: both generated texts and images achieve progressively larger coherence lengths as the training time or dataset size grows. We discuss connections between the hierarchical clustering mechanism we introduce here and the renormalization group in physics.

NMT-Obfuscator Attack: Ignore a sentence in translation with only one word

Neural Machine Translation systems are used in diverse applications due to their impressive performance. However, recent studies have shown that these systems are vulnerable to carefully crafted small perturbations to their inputs, known as adversarial attacks. In this paper, we propose a new type of adversarial attack against NMT models. In this attack, we find a word to be added between two sentences such that the second sentence is ignored and not translated by the NMT model. The word added between the two sentences is such that the whole adversarial text is natural in the source language. This type of attack can be harmful in practical scenarios since the attacker can hide malicious information in the automatic translation made by the target NMT model. Our experiments show that different NMT models and translation tasks are vulnerable to this type of attack. Our attack can successfully force the NMT models to ignore the second part of the input in the translation for more than 50% of all cases while being able to maintain low perplexity for the whole input.

Graph-Dictionary Signal Model for Sparse Representations of Multivariate Data

Representing and exploiting multivariate signals require capturing complex relations between variables. We define a novel Graph-Dictionary signal model, where a finite set of graphs characterizes relationships in data distribution through a weighted sum of their Laplacians. We propose a framework to infer the graph dictionary representation from observed data, along with a bilinear generalization of the primal-dual splitting algorithm to solve the learning problem. Our new formulation allows to include a priori knowledge on signal properties, as well as on underlying graphs and their coefficients. We show the capability of our method to reconstruct graphs from signals in multiple synthetic settings, where our model outperforms previous baselines. Then, we exploit graph-dictionary representations in a motor imagery decoding task on brain activity data, where we classify imagined motion better than standard methods relying on many more features.

LiNeS: Post-training Layer Scaling Prevents Forgetting and Enhances Model Merging

Large pre-trained models exhibit impressive zero-shot performance across diverse tasks, but fine-tuning often leads to catastrophic forgetting, where improvements on a target domain degrade generalization on other tasks. To address this challenge, we introduce LiNeS, Layer-increasing Network Scaling, a post-training editing technique designed to preserve pre-trained generalization while enhancing fine-tuned task performance. LiNeS scales parameter updates linearly based on their layer depth within the network, maintaining shallow layers close to their pre-trained values to preserve general features while allowing deeper layers to retain task-specific representations. We further extend this approach to multi-task model merging scenarios, where layer-wise scaling of merged parameters reduces negative task interference. LiNeS demonstrates significant improvements in both single-task and multi-task settings across various benchmarks in vision and natural language processing. It mitigates forgetting, enhances out-of-distribution generalization, integrates seamlessly with existing multi-task model merging baselines improving their performance across benchmarks and model sizes, and can boost generalization when merging LLM policies aligned with different rewards via RLHF. Importantly, our method is simple to implement and complementary to many existing techniques.

Deep End-to-End Survival Analysis with Temporal Consistency

In this study, we present a novel Survival Analysis algorithm designed to efficiently handle large-scale longitudinal data. Our approach draws inspiration from Reinforcement Learning principles, particularly the Deep Q-Network paradigm, extending Temporal Learning concepts to Survival Regression. A central idea in our method is temporal consistency, a hypothesis that past and future outcomes in the data evolve smoothly over time. Our framework uniquely incorporates temporal consistency into large datasets by providing a stable training signal that captures long-term temporal relationships and ensures reliable updates. Additionally, the method supports arbitrarily complex architectures, enabling the modeling of intricate temporal dependencies, and allows for end-to-end training. Through numerous experiments we provide empirical evidence demonstrating our framework's ability to exploit temporal consistency across datasets of varying sizes. Moreover, our algorithm outperforms benchmarks on datasets with long sequences, demonstrating its ability to capture long-term patterns. Finally, ablation studies show how our method enhances training stability.

DeFoG: Discrete Flow Matching for Graph Generation

Graph generation is fundamental in diverse scientific applications, due to its ability to reveal the underlying distribution of complex data, and eventually generate new, realistic data points. Despite the success of diffusion models in this domain, those face limitations in sampling efficiency and flexibility, stemming from the tight coupling between the training and sampling stages. To address this, we propose DeFoG, a novel framework using discrete flow matching for graph generation. DeFoG employs a flow-based approach that features an efficient linear interpolation noising process and a flexible denoising process based on a continuous-time Markov chain formulation. We leverage an expressive graph transformer and ensure desirable node permutation properties to respect graph symmetry. Crucially, our framework enables a disentangled design of the training and sampling stages, enabling more effective and efficient optimization of model performance. We navigate this design space by introducing several algorithmic improvements that boost the model performance, consistently surpassing existing diffusion models. We also theoretically demonstrate that, for general discrete data, discrete flow models can faithfully replicate the ground truth distribution - a result that naturally extends to graph data and reinforces DeFoG's foundations. Extensive experiments show that DeFoG achieves state-of-the-art results on synthetic and molecular datasets, improving both training and sampling efficiency over diffusion models, and excels in conditional generation on a digital pathology dataset.

Sequential Representation Learning via Static-Dynamic Conditional Disentanglement

This paper explores self-supervised disentangled representation learning within sequential data, focusing on separating time-independent and time-varying factors in videos. We propose a new model that breaks the usual independence assumption between those factors by explicitly accounting for the causal relationship between the static/dynamic variables and that improves the model expressivity through additional Normalizing Flows. A formal definition of the factors is proposed. This formalism leads to the derivation of sufficient conditions for the ground truth factors to be identifiable, and to the introduction of a novel theoretically grounded disentanglement constraint that can be directly and efficiently incorporated into our new framework. The experiments show that the proposed approach outperforms previous complex state-of-the-art techniques in scenarios where the dynamics of a scene are influenced by its content.

PriPHiT: Privacy-Preserving Hierarchical Training of Deep Neural Networks

The training phase of deep neural networks requires substantial resources and as such is often performed on cloud servers. However, this raises privacy concerns when the training dataset contains sensitive content, e.g., face images. In this work, we propose a method to perform the training phase of a deep learning model on both an edge device and a cloud server that prevents sensitive content being transmitted to the cloud while retaining the desired information. The proposed privacy-preserving method uses adversarial early exits to suppress the sensitive content at the edge and transmits the task-relevant information to the cloud. This approach incorporates noise addition during the training phase to provide a differential privacy guarantee. We extensively test our method on different facial datasets with diverse face attributes using various deep learning architectures, showcasing its outstanding performance. We also demonstrate the effectiveness of privacy preservation through successful defenses against different white-box and deep reconstruction attacks.