Abstract:The rapid advancement of scientific progress requires innovative tools that can accelerate discovery. While recent AI methods, particularly large language models (LLMs), have shown promise in tasks such as hypothesis generation and experimental design, they fall short in replicating the collaborative nature of real-world scientific practices, where diverse teams of experts work together to tackle complex problems. To address the limitation, we propose an LLM-based multi-agent system, i.e., Virtual Scientists (VirSci), designed to mimic the teamwork inherent in scientific research. VirSci organizes a team of agents to collaboratively generate, evaluate, and refine research ideas. Through comprehensive experiments, we demonstrate that this multi-agent approach outperforms the state-of-the-art method in producing novel and impactful scientific ideas, showing potential in aligning with key insights in the Science of Science field. Our findings suggest that integrating collaborative agents can lead to more innovative scientific outputs, offering a robust system for autonomous scientific discovery.
Abstract:With the rapid development of various sensing devices, spatiotemporal data is becoming increasingly important nowadays. However, due to sensing costs and privacy concerns, the collected data is often incomplete and coarse-grained, limiting its application to specific tasks. To address this, we propose a new task called spatiotemporal data reconstruction, which aims to infer complete and fine-grained data from sparse and coarse-grained observations. To achieve this, we introduce a two-stage data inference framework, DiffRecon, grounded in the Denoising Diffusion Probabilistic Model (DDPM). In the first stage, we present Diffusion-C, a diffusion model augmented by ST-PointFormer, a powerful encoder designed to leverage the spatial correlations between sparse data points. Following this, the second stage introduces Diffusion-F, which incorporates the proposed T-PatternNet to capture the temporal pattern within sequential data. Together, these two stages form an end-to-end framework capable of inferring complete, fine-grained data from incomplete and coarse-grained observations. We conducted experiments on multiple real-world datasets to demonstrate the superiority of our method.
Abstract:Mobile Crowd Sensing (MCS) is a promising paradigm that leverages mobile users and their smart portable devices to perform various real-world tasks. However, due to budget constraints and the inaccessibility of certain areas, Sparse MCS has emerged as a more practical alternative, collecting data from a limited number of target subareas and utilizing inference algorithms to complete the full sensing map. While existing approaches typically assume a time-discrete setting with data remaining constant within each sensing cycle, this simplification can introduce significant errors, especially when dealing with long cycles, as real-world sensing data often changes continuously. In this paper, we go from fine-grained completion, i.e., the subdivision of sensing cycles into minimal time units, towards a more accurate, time-continuous completion. We first introduce Deep Matrix Factorization (DMF) as a neural network-enabled framework and enhance it with a Recurrent Neural Network (RNN-DMF) to capture temporal correlations in these finer time slices. To further deal with the continuous data, we propose TIME-DMF, which captures temporal information across unequal intervals, enabling time-continuous completion. Additionally, we present the Query-Generate (Q-G) strategy within TIME-DMF to model the infinite states of continuous data. Extensive experiments across five types of sensing tasks demonstrate the effectiveness of our models and the advantages of time-continuous completion.
Abstract:Genomic selection (GS), as a critical crop breeding strategy, plays a key role in enhancing food production and addressing the global hunger crisis. The predominant approaches in GS currently revolve around employing statistical methods for prediction. However, statistical methods often come with two main limitations: strong statistical priors and linear assumptions. A recent trend is to capture the non-linear relationships between markers by deep learning. However, as crop datasets are commonly long sequences with limited samples, the robustness of deep learning models, especially Transformers, remains a challenge. In this work, to unleash the unexplored potential of attention mechanism for the task of interest, we propose a simple yet effective Transformer-based framework that enables end-to-end training of the whole sequence. Via experiments on rice3k and wheat3k datasets, we show that, with simple tricks such as k-mer tokenization and random masking, Transformer can achieve overall superior performance against seminal methods on GS tasks of interest.