RAG-GFM: Overcoming In-Memory Bottlenecks in Graph Foundation Models via Retrieval-Augmented Generation

Graph Foundation Models (GFMs) have emerged as a frontier in graph learning, which are expected to deliver transferable representations across diverse tasks. However, GFMs remain constrained by in-memory bottlenecks: they attempt to encode knowledge into model parameters, which limits semantic capacity, introduces heavy lossy compression with conflicts, and entangles graph representation with the knowledge in ways that hinder efficient adaptation, undermining scalability and interpretability. In this work,we propose RAG-GFM, a Retrieval-Augmented Generation aided Graph Foundation Model that offloads knowledge from parameters and complements parameterized learning. To externalize graph knowledge, we build a dual-modal unified retrieval module, where a semantic store from prefix-structured text and a structural store from centrality-based motif. To preserve heterogeneous information, we design a dual-view alignment objective that contrasts both modalities to capture both content and relational patterns. To enable efficient downstream adaptation, we perform in-context augmentation to enrich supporting instances with retrieved texts and motifs as contextual evidence. Extensive experiments on five benchmark graph datasets demonstrate that RAG-GFM consistently outperforms 13 state-of-the-art baselines in both cross-domain node and graph classification, achieving superior effectiveness and efficiency.

Overcoming In-Memory Bottlenecks in Graph Foundation Models via Retrieval-Augmented Generation

Graph Foundation Models (GFMs) have emerged as a frontier in graph learning, which are expected to deliver transferable representations across diverse tasks. However, GFMs remain constrained by in-memory bottlenecks: they attempt to encode knowledge into model parameters, which limits semantic capacity, introduces heavy lossy compression with conflicts, and entangles graph representation with the knowledge in ways that hinder efficient adaptation, undermining scalability and interpretability. In this work,we propose RAG-GFM, a Retrieval-Augmented Generation aided Graph Foundation Model that offloads knowledge from parameters and complements parameterized learning. To externalize graph knowledge, we build a dual-modal unified retrieval module, where a semantic store from prefix-structured text and a structural store from centrality-based motif. To preserve heterogeneous information, we design a dual-view alignment objective that contrasts both modalities to capture both content and relational patterns. To enable efficient downstream adaptation, we perform in-context augmentation to enrich supporting instances with retrieved texts and motifs as contextual evidence. Extensive experiments on five benchmark graph datasets demonstrate that RAG-GFM consistently outperforms 13 state-of-the-art baselines in both cross-domain node and graph classification, achieving superior effectiveness and efficiency.

Is the Information Bottleneck Robust Enough? Towards Label-Noise Resistant Information Bottleneck Learning

The Information Bottleneck (IB) principle facilitates effective representation learning by preserving label-relevant information while compressing irrelevant information. However, its strong reliance on accurate labels makes it inherently vulnerable to label noise, prevalent in real-world scenarios, resulting in significant performance degradation and overfitting. To address this issue, we propose LaT-IB, a novel Label-Noise ResistanT Information Bottleneck method which introduces a "Minimal-Sufficient-Clean" (MSC) criterion. Instantiated as a mutual information regularizer to retain task-relevant information while discarding noise, MSC addresses standard IB's vulnerability to noisy label supervision. To achieve this, LaT-IB employs a noise-aware latent disentanglement that decomposes the latent representation into components aligned with to the clean label space and the noise space. Theoretically, we first derive mutual information bounds for each component of our objective including prediction, compression, and disentanglement, and moreover prove that optimizing it encourages representations invariant to input noise and separates clean and noisy label information. Furthermore, we design a three-phase training framework: Warmup, Knowledge Injection and Robust Training, to progressively guide the model toward noise-resistant representations. Extensive experiments demonstrate that LaT-IB achieves superior robustness and efficiency under label noise, significantly enhancing robustness and applicability in real-world scenarios with label noise.

GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuning

Inspired by the remarkable success of foundation models in language and vision, Graph Foundation Models (GFMs) hold significant promise for broad applicability across diverse graph tasks and domains. However, existing GFMs struggle with unstable few-shot fine-tuning, where both performance and adaptation efficiency exhibit significant fluctuations caused by the randomness in the support sample selection and structural discrepancies between the pre-trained and target graphs. How to fine-tune GFMs robustly and efficiently to enable trustworthy knowledge transfer across domains and tasks is the major challenge. In this paper, we propose GRAVER, a novel Generative gRAph VocabulariEs for Robust GFM fine-tuning framework that tackles the aforementioned instability via generative augmentations. Specifically, to identify transferable units, we analyze and extract key class-specific subgraph patterns by ego-graph disentanglement and validate their transferability both theoretically and empirically. To enable effective pre-training across diverse domains, we leverage a universal task template based on ego-graph similarity and construct graph vocabularies via graphon-based generative experts. To facilitate robust and efficient prompt fine-tuning, we grave the support samples with in-context vocabularies, where the lightweight MoE-CoE network attentively routes knowledge from source domains. Extensive experiments demonstrate the superiority of GRAVER over effectiveness, robustness, and efficiency on downstream few-shot node and graph classification tasks compared with 15 state-of-the-art baselines.

Robust Graph Condensation via Classification Complexity Mitigation

Graph condensation (GC) has gained significant attention for its ability to synthesize smaller yet informative graphs. However, existing studies often overlook the robustness of GC in scenarios where the original graph is corrupted. In such cases, we observe that the performance of GC deteriorates significantly, while existing robust graph learning technologies offer only limited effectiveness. Through both empirical investigation and theoretical analysis, we reveal that GC is inherently an intrinsic-dimension-reducing process, synthesizing a condensed graph with lower classification complexity. Although this property is critical for effective GC performance, it remains highly vulnerable to adversarial perturbations. To tackle this vulnerability and improve GC robustness, we adopt the geometry perspective of graph data manifold and propose a novel Manifold-constrained Robust Graph Condensation framework named MRGC. Specifically, we introduce three graph data manifold learning modules that guide the condensed graph to lie within a smooth, low-dimensional manifold with minimal class ambiguity, thereby preserving the classification complexity reduction capability of GC and ensuring robust performance under universal adversarial attacks. Extensive experiments demonstrate the robustness of \ModelName\ across diverse attack scenarios.

Toward a Unified Geometry Understanding: Riemannian Diffusion Framework for Graph Generation and Prediction

Graph diffusion models have made significant progress in learning structured graph data and have demonstrated strong potential for predictive tasks. Existing approaches typically embed node, edge, and graph-level features into a unified latent space, modeling prediction tasks including classification and regression as a form of conditional generation. However, due to the non-Euclidean nature of graph data, features of different curvatures are entangled in the same latent space without releasing their geometric potential. To address this issue, we aim to construt an ideal Riemannian diffusion model to capture distinct manifold signatures of complex graph data and learn their distribution. This goal faces two challenges: numerical instability caused by exponential mapping during the encoding proces and manifold deviation during diffusion generation. To address these challenges, we propose GeoMancer: a novel Riemannian graph diffusion framework for both generation and prediction tasks. To mitigate numerical instability, we replace exponential mapping with an isometric-invariant Riemannian gyrokernel approach and decouple multi-level features onto their respective task-specific manifolds to learn optimal representations. To address manifold deviation, we introduce a manifold-constrained diffusion method and a self-guided strategy for unconditional generation, ensuring that the generated data remains aligned with the manifold signature. Extensive experiments validate the effectiveness of our approach, demonstrating superior performance across a variety of tasks.

Mitigating Message Imbalance in Fraud Detection with Dual-View Graph Representation Learning

Graph representation learning has become a mainstream method for fraud detection due to its strong expressive power, which focuses on enhancing node representations through improved neighborhood knowledge capture. However, the focus on local interactions leads to imbalanced transmission of global topological information and increased risk of node-specific information being overwhelmed during aggregation due to the imbalance between fraud and benign nodes. In this paper, we first summarize the impact of topology and class imbalance on downstream tasks in GNN-based fraud detection, as the problem of imbalanced supervisory messages is caused by fraudsters' topological behavior obfuscation and identity feature concealment. Based on statistical validation, we propose a novel dual-view graph representation learning method to mitigate Message imbalance in Fraud Detection(MimbFD). Specifically, we design a topological message reachability module for high-quality node representation learning to penetrate fraudsters' camouflage and alleviate insufficient propagation. Then, we introduce a local confounding debiasing module to adjust node representations, enhancing the stable association between node representations and labels to balance the influence of different classes. Finally, we conducted experiments on three public fraud datasets, and the results demonstrate that MimbFD exhibits outstanding performance in fraud detection.

Controllable Logical Hypothesis Generation for Abductive Reasoning in Knowledge Graphs

Abductive reasoning in knowledge graphs aims to generate plausible logical hypotheses from observed entities, with broad applications in areas such as clinical diagnosis and scientific discovery. However, due to a lack of controllability, a single observation may yield numerous plausible but redundant or irrelevant hypotheses on large-scale knowledge graphs. To address this limitation, we introduce the task of controllable hypothesis generation to improve the practical utility of abductive reasoning. This task faces two key challenges when controlling for generating long and complex logical hypotheses: hypothesis space collapse and hypothesis oversensitivity. To address these challenges, we propose CtrlHGen, a Controllable logcial Hypothesis Generation framework for abductive reasoning over knowledge graphs, trained in a two-stage paradigm including supervised learning and subsequent reinforcement learning. To mitigate hypothesis space collapse, we design a dataset augmentation strategy based on sub-logical decomposition, enabling the model to learn complex logical structures by leveraging semantic patterns in simpler components. To address hypothesis oversensitivity, we incorporate smoothed semantic rewards including Dice and Overlap scores, and introduce a condition-adherence reward to guide the generation toward user-specified control constraints. Extensive experiments on three benchmark datasets demonstrate that our model not only better adheres to control conditions but also achieves superior semantic similarity performance compared to baselines.

An Out-Of-Distribution Membership Inference Attack Approach for Cross-Domain Graph Attacks

Graph Neural Network-based methods face privacy leakage risks due to the introduction of topological structures about the targets, which allows attackers to bypass the target's prior knowledge of the sensitive attributes and realize membership inference attacks (MIA) by observing and analyzing the topology distribution. As privacy concerns grow, the assumption of MIA, which presumes that attackers can obtain an auxiliary dataset with the same distribution, is increasingly deviating from reality. In this paper, we categorize the distribution diversity issue in real-world MIA scenarios as an Out-Of-Distribution (OOD) problem, and propose a novel Graph OOD Membership Inference Attack (GOOD-MIA) to achieve cross-domain graph attacks. Specifically, we construct shadow subgraphs with distributions from different domains to model the diversity of real-world data. We then explore the stable node representations that remain unchanged under external influences and consider eliminating redundant information from confounding environments and extracting task-relevant key information to more clearly distinguish between the characteristics of training data and unseen data. This OOD-based design makes cross-domain graph attacks possible. Finally, we perform risk extrapolation to optimize the attack's domain adaptability during attack inference to generalize the attack to other domains. Experimental results demonstrate that GOOD-MIA achieves superior attack performance in datasets designed for multiple domains.

Galaxy Walker: Geometry-aware VLMs For Galaxy-scale Understanding

Modern vision-language models (VLMs) develop patch embedding and convolution backbone within vector space, especially Euclidean ones, at the very founding. When expanding VLMs to a galaxy scale for understanding astronomical phenomena, the integration of spherical space for planetary orbits and hyperbolic spaces for black holes raises two formidable challenges. a) The current pre-training model is confined to Euclidean space rather than a comprehensive geometric embedding. b) The predominant architecture lacks suitable backbones for anisotropic physical geometries. In this paper, we introduced Galaxy-Walker, a geometry-aware VLM, for the universe-level vision understanding tasks. We proposed the geometry prompt that generates geometry tokens by random walks across diverse spaces on a multi-scale physical graph, along with a geometry adapter that compresses and reshapes the space anisotropy in a mixture-of-experts manner. Extensive experiments demonstrate the effectiveness of our approach, with Galaxy-Walker achieving state-of-the-art performance in both galaxy property estimation ($R^2$ scores up to $0.91$) and morphology classification tasks (up to $+0.17$ F1 improvement in challenging features), significantly outperforming both domain-specific models and general-purpose VLMs.