LLASP: Fine-tuning Large Language Models for Answer Set Programming

Recently, Large Language Models (LLMs) have showcased their potential in various natural language processing tasks, including code generation. However, while significant progress has been made in adapting LLMs to generate code for several imperative programming languages and tasks, there remains a notable gap in their application to declarative formalisms, such as Answer Set Programming (ASP). In this paper, we move a step towards exploring the capabilities of LLMs for ASP code generation. First, we perform a systematic evaluation of several state-of-the-art LLMs. Despite their power in terms of number of parameters, training data and computational resources, empirical results demonstrate inadequate performances in generating correct ASP programs. Therefore, we propose LLASP, a fine-tuned lightweight model specifically trained to encode fundamental ASP program patterns. To this aim, we create an ad-hoc dataset covering a wide variety of fundamental problem specifications that can be encoded in ASP. Our experiments demonstrate that the quality of ASP programs generated by LLASP is remarkable. This holds true not only when compared to the non-fine-tuned counterpart but also when compared to the majority of eager LLM candidates, particularly from a semantic perspective. All the code and data used to perform the experiments are publicly available at https://anonymous.4open.science/r/LLASP-D86C/.

μ-Net: A Deep Learning-Based Architecture for μ-CT Segmentation

X-ray computed microtomography ({\mu}-CT) is a non-destructive technique that can generate high-resolution 3D images of the internal anatomy of medical and biological samples. These images enable clinicians to examine internal anatomy and gain insights into the disease or anatomical morphology. However, extracting relevant information from 3D images requires semantic segmentation of the regions of interest, which is usually done manually and results time-consuming and tedious. In this work, we propose a novel framework that uses a convolutional neural network (CNN) to automatically segment the full morphology of the heart of Carassius auratus. The framework employs an optimized 2D CNN architecture that can infer a 3D segmentation of the sample, avoiding the high computational cost of a 3D CNN architecture. We tackle the challenges of handling large and high-resoluted image data (over a thousand pixels in each dimension) and a small training database (only three samples) by proposing a standard protocol for data normalization and processing. Moreover, we investigate how the noise, contrast, and spatial resolution of the sample and the training of the architecture are affected by the reconstruction technique, which depends on the number of input images. Experiments show that our framework significantly reduces the time required to segment new samples, allowing a faster microtomography analysis of the Carassius auratus heart shape. Furthermore, our framework can work with any bio-image (biological and medical) from {\mu}-CT with high-resolution and small dataset size

Data Augmentation: a Combined Inductive-Deductive Approach featuring Answer Set Programming

Although the availability of a large amount of data is usually given for granted, there are relevant scenarios where this is not the case; for instance, in the biomedical/healthcare domain, some applications require to build huge datasets of proper images, but the acquisition of such images is often hard for different reasons (e.g., accessibility, costs, pathology-related variability), thus causing limited and usually imbalanced datasets. Hence, the need for synthesizing photo-realistic images via advanced Data Augmentation techniques is crucial. In this paper we propose a hybrid inductive-deductive approach to the problem; in particular, starting from a limited set of real labeled images, the proposed framework makes use of logic programs for declaratively specifying the structure of new images, that is guaranteed to comply with both a set of constraints coming from the domain knowledge and some specific desiderata. The resulting labeled images undergo a dedicated process based on Deep Learning in charge of creating photo-realistic images that comply with the generated label.

I-DLV-sr: A Stream Reasoning System based on I-DLV

We introduce a novel logic-based system for reasoning over data streams, which relies on a framework enabling a tight, fine-tuned interaction between Apache Flink and the I^2-DLV system. The architecture allows to take advantage from both the powerful distributed stream processing capabilities of Flink and the incremental reasoning capabilities of I^2-DLV based on overgrounding techniques. Besides the system architecture, we illustrate the supported input language and its modeling capabilities, and discuss the results of an experimental activity aimed at assessing the viability of the approach. This paper is under consideration in Theory and Practice of Logic Programming (TPLP).

How can we learn from challenges? A statistical approach to driving future algorithm development

Challenges have become the state-of-the-art approach to benchmark image analysis algorithms in a comparative manner. While the validation on identical data sets was a great step forward, results analysis is often restricted to pure ranking tables, leaving relevant questions unanswered. Specifically, little effort has been put into the systematic investigation on what characterizes images in which state-of-the-art algorithms fail. To address this gap in the literature, we (1) present a statistical framework for learning from challenges and (2) instantiate it for the specific task of instrument instance segmentation in laparoscopic videos. Our framework relies on the semantic meta data annotation of images, which serves as foundation for a General Linear Mixed Models (GLMM) analysis. Based on 51,542 meta data annotations performed on 2,728 images, we applied our approach to the results of the Robust Medical Instrument Segmentation Challenge (ROBUST-MIS) challenge 2019 and revealed underexposure, motion and occlusion of instruments as well as the presence of smoke or other objects in the background as major sources of algorithm failure. Our subsequent method development, tailored to the specific remaining issues, yielded a deep learning model with state-of-the-art overall performance and specific strengths in the processing of images in which previous methods tended to fail. Due to the objectivity and generic applicability of our approach, it could become a valuable tool for validation in the field of medical image analysis and beyond. and segmentation of small, crossing, moving and transparent instrument(s) (parts).

A Machine Learning guided Rewriting Approach for ASP Logic Programs

Answer Set Programming (ASP) is a declarative logic formalism that allows to encode computational problems via logic programs. Despite the declarative nature of the formalism, some advanced expertise is required, in general, for designing an ASP encoding that can be efficiently evaluated by an actual ASP system. A common way for trying to reduce the burden of manually tweaking an ASP program consists in automatically rewriting the input encoding according to suitable techniques, for producing alternative, yet semantically equivalent, ASP programs. However, rewriting does not always grant benefits in terms of performance; hence, proper means are needed for predicting their effects with this respect. In this paper we describe an approach based on Machine Learning (ML) to automatically decide whether to rewrite. In particular, given an ASP program and a set of input facts, our approach chooses whether and how to rewrite input rules based on a set of features measuring their structural properties and domain information. To this end, a Multilayer Perceptrons model has then been trained to guide the ASP grounder I-DLV on rewriting input rules. We report and discuss the results of an experimental evaluation over a prototypical implementation.

ASP-Core-2 Input Language Format

Standardization of solver input languages has been a main driver for the growth of several areas within knowledge representation and reasoning, fostering the exploitation in actual applications. In this document we present the ASP-Core-2 standard input language for Answer Set Programming, which has been adopted in ASP Competition events since 2013.

A Logic-Based Framework Leveraging Neural Networks for Studying the Evolution of Neurological Disorders

Deductive formalisms have been strongly developed in recent years; among them, Answer Set Programming (ASP) gained some momentum, and has been lately fruitfully employed in many real-world scenarios. Nonetheless, in spite of a large number of success stories in relevant application areas, and even in industrial contexts, deductive reasoning cannot be considered the ultimate, comprehensive solution to AI; indeed, in several contexts, other approaches result to be more useful. Typical Bioinformatics tasks, for instance classification, are currently carried out mostly by Machine Learning (ML) based solutions. In this paper, we focus on the relatively new problem of analyzing the evolution of neurological disorders. In this context, ML approaches already demonstrated to be a viable solution for classification tasks; here, we show how ASP can play a relevant role in the brain evolution simulation task. In particular, we propose a general and extensible framework to support physicians and researchers at understanding the complex mechanisms underlying neurological disorders. The framework relies on a combined use of ML and ASP, and is general enough to be applied in several other application scenarios, which are outlined in the paper.

Incremental Answer Set Programming with Overgrounding

Repeated executions of reasoning tasks for varying inputs are necessary in many applicative settings, such as stream reasoning. In this context, we propose an incremental grounding approach for the answer set semantics. We focus on the possibility of generating incrementally larger ground logic programs equivalent to a given non-ground one; so called overgrounded programs can be reused in combination with deliberately many different sets of inputs. Updating overgrounded programs requires a small effort, thus making the instantiation of logic programs considerably faster when grounding is repeated on a series of inputs similar to each other. Notably, the proposed approach works "under the hood", relieving designers of logic programs from controlling technical aspects of grounding engines and answer set systems. In this work we present the theoretical basis of the proposed incremental grounding technique, we illustrate the consequent repeated evaluation strategy and report about our experiments. This paper is under consideration in Theory and Practice of Logic Programming (TPLP).

Optimizing Answer Set Computation via Heuristic-Based Decomposition

Answer Set Programming (ASP) is a purely declarative formalism developed in the field of logic programming and nonmonotonic reasoning: computational problems are encoded by logic programs whose answer sets, corresponding to solutions, are computed by an ASP system. Different, semantically equivalent, programs can be defined for the same problem; however, performance of systems evaluating them might significantly vary. We propose an approach for automatically transforming an input logic program into an equivalent one that can be evaluated more efficiently. One can make use of existing tree-decomposition techniques for rewriting selected rules into a set of multiple ones; the idea is to guide and adaptively apply them on the basis of proper new heuristics, to obtain a smart rewriting algorithm to be integrated into an ASP system. The method is rather general: it can be adapted to any system and implement different preference policies. Furthermore, we define a set of new heuristics tailored at optimizing grounding, one of the main phases of the ASP computation; we use them in order to implement the approach into the ASP system DLV, in particular into its grounding subsystem I-DLV, and carry out an extensive experimental activity for assessing the impact of the proposal. Under consideration in Theory and Practice of Logic Programming (TPLP).