IDentity with Locality: An ideal hash for gene sequence search

Gene sequence search is a fundamental operation in computational genomics. Due to the petabyte scale of genome archives, most gene search systems now use hashing-based data structures such as Bloom Filters (BF). The state-of-the-art systems such as Compact bit-slicing signature index (COBS) and Repeated And Merged Bloom filters (RAMBO) use BF with Random Hash (RH) functions for gene representation and identification. The standard recipe is to cast the gene search problem as a sequence of membership problems testing if each subsequent gene substring (called kmer) of Q is present in the set of kmers of the entire gene database D. We observe that RH functions, which are crucial to the memory and the computational advantage of BF, are also detrimental to the system performance of gene-search systems. While subsequent kmers being queried are likely very similar, RH, oblivious to any similarity, uniformly distributes the kmers to different parts of potentially large BF, thus triggering excessive cache misses and causing system slowdown. We propose a novel hash function called the Identity with Locality (IDL) hash family, which co-locates the keys close in input space without causing collisions. This approach ensures both cache locality and key preservation. IDL functions can be a drop-in replacement for RH functions and help improve the performance of information retrieval systems. We give a simple but practical construction of IDL function families and show that replacing the RH with IDL functions reduces cache misses by a factor of 5x, thus improving query and indexing times of SOTA methods such as COBS and RAMBO by factors up to 2x without compromising their quality. We also provide a theoretical analysis of the false positive rate of BF with IDL functions. Our hash function is the first study that bridges Locality Sensitive Hash (LSH) and RH to obtain cache efficiency.

Heterogeneous federated collaborative filtering using FAIR: Federated Averaging in Random Subspaces

Recommendation systems (RS) for items (e.g., movies, books) and ads are widely used to tailor content to users on various internet platforms. Traditionally, recommendation models are trained on a central server. However, due to rising concerns for data privacy and regulations like the GDPR, federated learning is an increasingly popular paradigm in which data never leaves the client device. Applying federated learning to recommendation models is non-trivial due to large embedding tables, which often exceed the memory constraints of most user devices. To include data from all devices in federated learning, we must enable collective training of embedding tables on devices with heterogeneous memory capacities. Current solutions to heterogeneous federated learning can only accommodate a small range of capacities and thus limit the number of devices that can participate in training. We present Federated Averaging in Random subspaces (FAIR), which allows arbitrary compression of embedding tables based on device capacity and ensures the participation of all devices in training. FAIR uses what we call consistent and collapsible subspaces defined by hashing-based random projections to jointly train large embedding tables while using varying amounts of compression on user devices. We evaluate FAIR on Neural Collaborative Filtering tasks with multiple datasets and verify that FAIR can gather and share information from a wide range of devices with varying capacities, allowing for seamless collaboration. We prove the convergence of FAIR in the homogeneous setting with non-i.i.d data distribution. Our code is open source at {https://github.com/apd10/FLCF}

In defense of parameter sharing for model-compression

When considering a model architecture, there are several ways to reduce its memory footprint. Historically, popular approaches included selecting smaller architectures and creating sparse networks through pruning. More recently, randomized parameter-sharing (RPS) methods have gained traction for model compression at start of training. In this paper, we comprehensively assess the trade-off between memory and accuracy across RPS, pruning techniques, and building smaller models. Our findings demonstrate that RPS, which is both data and model-agnostic, consistently outperforms/matches smaller models and all moderately informed pruning strategies, such as MAG, SNIP, SYNFLOW, and GRASP, across the entire compression range. This advantage becomes particularly pronounced in higher compression scenarios. Notably, even when compared to highly informed pruning techniques like Lottery Ticket Rewinding (LTR), RPS exhibits superior performance in high compression settings. This points out inherent capacity advantage that RPS enjoys over sparse models. Theoretically, we establish RPS as a superior technique in terms of memory-efficient representation when compared to pruning for linear models. This paper argues in favor of paradigm shift towards RPS based models. During our rigorous evaluation of RPS, we identified issues in the state-of-the-art RPS technique ROAST, specifically regarding stability (ROAST's sensitivity to initialization hyperparameters, often leading to divergence) and Pareto-continuity (ROAST's inability to recover the accuracy of the original model at zero compression). We provably address both of these issues. We refer to the modified RPS, which incorporates our improvements, as STABLE-RPS.

Scissorhands: Exploiting the Persistence of Importance Hypothesis for LLM KV Cache Compression at Test Time

Large language models(LLMs) have sparked a new wave of exciting AI applications. Hosting these models at scale requires significant memory resources. One crucial memory bottleneck for the deployment stems from the context window. It is commonly recognized that model weights are memory hungry; however, the size of key-value embedding stored during the generation process (KV cache) can easily surpass the model size. The enormous size of the KV cache puts constraints on the inference batch size, which is crucial for high throughput inference workload. Inspired by an interesting observation of the attention scores, we hypothesize the persistence of importance: only pivotal tokens, which had a substantial influence at one step, will significantly influence future generations. Based on our empirical verification and theoretical analysis around this hypothesis, we propose Scissorhands, a system that maintains the memory usage of the KV cache at a fixed budget without finetuning the model. In essence, Scissorhands manages the KV cache by storing the pivotal tokens with a higher probability. We validate that Scissorhands reduces the inference memory usage of the KV cache by up to 5X without compromising model quality. We further demonstrate that Scissorhands can be combined with 4-bit quantization, traditionally used to compress model weights, to achieve up to 20X compression.

The trade-offs of model size in large recommendation models : A 10000 $\times$ compressed criteo-tb DLRM model

Embedding tables dominate industrial-scale recommendation model sizes, using up to terabytes of memory. A popular and the largest publicly available machine learning MLPerf benchmark on recommendation data is a Deep Learning Recommendation Model (DLRM) trained on a terabyte of click-through data. It contains 100GB of embedding memory (25+Billion parameters). DLRMs, due to their sheer size and the associated volume of data, face difficulty in training, deploying for inference, and memory bottlenecks due to large embedding tables. This paper analyzes and extensively evaluates a generic parameter sharing setup (PSS) for compressing DLRM models. We show theoretical upper bounds on the learnable memory requirements for achieving $(1 \pm \epsilon)$ approximations to the embedding table. Our bounds indicate exponentially fewer parameters suffice for good accuracy. To this end, we demonstrate a PSS DLRM reaching 10000$\times$ compression on criteo-tb without losing quality. Such a compression, however, comes with a caveat. It requires 4.5 $\times$ more iterations to reach the same saturation quality. The paper argues that this tradeoff needs more investigations as it might be significantly favorable. Leveraging the small size of the compressed model, we show a 4.3$\times$ improvement in training latency leading to similar overall training times. Thus, in the tradeoff between system advantage of a small DLRM model vs. slower convergence, we show that scales are tipped towards having a smaller DLRM model, leading to faster inference, easier deployment, and similar training times.

Efficient model compression with Random Operation Access Specific Tile (ROAST) hashing

Advancements in deep learning are often associated with increasing model sizes. The model size dramatically affects the deployment cost and latency of deep models. For instance, models like BERT cannot be deployed on edge devices and mobiles due to their sheer size. As a result, most advances in Deep Learning are yet to reach the edge. Model compression has sought much-deserved attention in literature across natural language processing, vision, and recommendation domains. This paper proposes a model-agnostic, cache-friendly model compression approach: Random Operation Access Specific Tile (ROAST) hashing. ROAST collapses the parameters by clubbing them through a lightweight mapping. Notably, while clubbing these parameters, ROAST utilizes cache hierarchies by aligning the memory access pattern with the parameter access pattern. ROAST is up to $\sim 25 \times$ faster to train and $\sim 50 \times$ faster to infer than the popular parameter sharing method HashedNet. Additionally, ROAST introduces global weight sharing, which is empirically and theoretically superior to local weight sharing in HashedNet, and can be of independent interest in itself. With ROAST, we present the first compressed BERT, which is $100\times - 1000\times$ smaller but does not result in quality degradation. These compression levels on universal architecture like transformers are promising for the future of SOTA model deployment on resource-constrained devices like mobile and edge devices

Random Offset Block Embedding Array (ROBE) for CriteoTB Benchmark MLPerf DLRM Model : 1000$\times$ Compression and 2.7$\times$ Faster Inference

Deep learning for recommendation data is the one of the most pervasive and challenging AI workload in recent times. State-of-the-art recommendation models are one of the largest models rivalling the likes of GPT-3 and Switch Transformer. Challenges in deep learning recommendation models (DLRM) stem from learning dense embeddings for each of the categorical values. These embedding tables in industrial scale models can be as large as hundreds of terabytes. Such large models lead to a plethora of engineering challenges, not to mention prohibitive communication overheads, and slower training and inference times. Of these, slower inference time directly impacts user experience. Model compression for DLRM is gaining traction and the community has recently shown impressive compression results. In this paper, we present Random Offset Block Embedding Array (ROBE) as a low memory alternative to embedding tables which provide orders of magnitude reduction in memory usage while maintaining accuracy and boosting execution speed. ROBE is a simple fundamental approach in improving both cache performance and the variance of randomized hashing, which could be of independent interest in itself. We demonstrate that we can successfully train DLRM models with same accuracy while using $1000 \times$ less memory. A $1000\times$ compressed model directly results in faster inference without any engineering. In particular, we show that we can train DLRM model using ROBE Array of size 100MB on a single GPU to achieve AUC of 0.8025 or higher as required by official MLPerf CriteoTB benchmark DLRM model of 100GB while achieving about $2.7\times$ (170\%) improvement in inference throughput.

Beyond Convolutions: A Novel Deep Learning Approach for Raw Seismic Data Ingestion

Traditional seismic processing workflows (SPW) are expensive, requiring over a year of human and computational effort. Deep learning (DL) based data-driven seismic workflows (DSPW) hold the potential to reduce these timelines to a few minutes. Raw seismic data (terabytes) and required subsurface prediction (gigabytes) are enormous. This large-scale, spatially irregular time-series data poses seismic data ingestion (SDI) as an unconventional yet fundamental problem in DSPW. Current DL research is limited to small-scale simplified synthetic datasets as they treat seismic data like images and process them with convolution networks. Real seismic data, however, is at least 5D. Applying 5D convolutions to this scale is computationally prohibitive. Moreover, raw seismic data is highly unstructured and hence inherently non-image like. We propose a fundamental shift to move away from convolutions and introduce SESDI: Set Embedding based SDI approach. SESDI first breaks down the mammoth task of large-scale prediction into an efficient compact auxiliary task. SESDI gracefully incorporates irregularities in data with its novel model architecture. We believe SESDI is the first successful demonstration of end-to-end learning on real seismic data. SESDI achieves SSIM of over 0.8 on velocity inversion task on real proprietary data from the Gulf of Mexico and outperforms the state-of-the-art U-Net model on synthetic datasets.

Semantically Constrained Memory Allocation (SCMA) for Embedding in Efficient Recommendation Systems

Deep learning-based models are utilized to achieve state-of-the-art performance for recommendation systems. A key challenge for these models is to work with millions of categorical classes or tokens. The standard approach is to learn end-to-end, dense latent representations or embeddings for each token. The resulting embeddings require large amounts of memory that blow up with the number of tokens. Training and inference with these models create storage, and memory bandwidth bottlenecks leading to significant computing and energy consumption when deployed in practice. To this end, we present the problem of \textit{Memory Allocation} under budget for embeddings and propose a novel formulation of memory shared embedding, where memory is shared in proportion to the overlap in semantic information. Our formulation admits a practical and efficient randomized solution with Locality sensitive hashing based Memory Allocation (LMA). We demonstrate a significant reduction in the memory footprint while maintaining performance. In particular, our LMA embeddings achieve the same performance compared to standard embeddings with a 16$\times$ reduction in memory footprint. Moreover, LMA achieves an average improvement of over 0.003 AUC across different memory regimes than standard DLRM models on Criteo and Avazu datasets

Density Sketches for Sampling and Estimation

We introduce Density sketches (DS): a succinct online summary of the data distribution. DS can accurately estimate point wise probability density. Interestingly, DS also provides a capability to sample unseen novel data from the underlying data distribution. Thus, analogous to popular generative models, DS allows us to succinctly replace the real-data in almost all machine learning pipelines with synthetic examples drawn from the same distribution as the original data. However, unlike generative models, which do not have any statistical guarantees, DS leads to theoretically sound asymptotically converging consistent estimators of the underlying density function. Density sketches also have many appealing properties making them ideal for large-scale distributed applications. DS construction is an online algorithm. The sketches are additive, i.e., the sum of two sketches is the sketch of the combined data. These properties allow data to be collected from distributed sources, compressed into a density sketch, efficiently transmitted in the sketch form to a central server, merged, and re-sampled into a synthetic database for modeling applications. Thus, density sketches can potentially revolutionize how we store, communicate, and distribute data.