ClimateBench-M: A Multi-Modal Climate Data Benchmark with a Simple Generative Method

Climate science studies the structure and dynamics of Earth's climate system and seeks to understand how climate changes over time, where the data is usually stored in the format of time series, recording the climate features, geolocation, time attributes, etc. Recently, much research attention has been paid to the climate benchmarks. In addition to the most common task of weather forecasting, several pioneering benchmark works are proposed for extending the modality, such as domain-specific applications like tropical cyclone intensity prediction and flash flood damage estimation, or climate statement and confidence level in the format of natural language. To further motivate the artificial general intelligence development for climate science, in this paper, we first contribute a multi-modal climate benchmark, i.e., ClimateBench-M, which aligns (1) the time series climate data from ERA5, (2) extreme weather events data from NOAA, and (3) satellite image data from NASA HLS based on a unified spatial-temporal granularity. Second, under each data modality, we also propose a simple but strong generative method that could produce competitive performance in weather forecasting, thunderstorm alerts, and crop segmentation tasks in the proposed ClimateBench-M. The data and code of ClimateBench-M are publicly available at https://github.com/iDEA-iSAIL-Lab-UIUC/ClimateBench-M.

GTR: Graph-Table-RAG for Cross-Table Question Answering

Beyond pure text, a substantial amount of knowledge is stored in tables. In real-world scenarios, user questions often require retrieving answers that are distributed across multiple tables. GraphRAG has recently attracted much attention for enhancing LLMs' reasoning capabilities by organizing external knowledge to address ad-hoc and complex questions, exemplifying a promising direction for cross-table question answering. In this paper, to address the current gap in available data, we first introduce a multi-table benchmark, MutliTableQA, comprising 60k tables and 25k user queries collected from real-world sources. Then, we propose the first Graph-Table-RAG framework, namely GTR, which reorganizes table corpora into a heterogeneous graph, employs a hierarchical coarse-to-fine retrieval process to extract the most relevant tables, and integrates graph-aware prompting for downstream LLMs' tabular reasoning. Extensive experiments show that GTR exhibits superior cross-table question-answering performance while maintaining high deployment efficiency, demonstrating its real-world practical applicability.

Language in the Flow of Time: Time-Series-Paired Texts Weaved into a Unified Temporal Narrative

While many advances in time series models focus exclusively on numerical data, research on multimodal time series, particularly those involving contextual textual information commonly encountered in real-world scenarios, remains in its infancy. Consequently, effectively integrating the text modality remains challenging. In this work, we highlight an intuitive yet significant observation that has been overlooked by existing works: time-series-paired texts exhibit periodic properties that closely mirror those of the original time series. Building on this insight, we propose a novel framework, Texts as Time Series (TaTS), which considers the time-series-paired texts to be auxiliary variables of the time series. TaTS can be plugged into any existing numerical-only time series models and enable them to handle time series data with paired texts effectively. Through extensive experiments on both multimodal time series forecasting and imputation tasks across benchmark datasets with various existing time series models, we demonstrate that TaTS can enhance predictive performance and achieve outperformance without modifying model architectures.

PyG-SSL: A Graph Self-Supervised Learning Toolkit

Graph Self-Supervised Learning (SSL) has emerged as a pivotal area of research in recent years. By engaging in pretext tasks to learn the intricate topological structures and properties of graphs using unlabeled data, these graph SSL models achieve enhanced performance, improved generalization, and heightened robustness. Despite the remarkable achievements of these graph SSL methods, their current implementation poses significant challenges for beginners and practitioners due to the complex nature of graph structures, inconsistent evaluation metrics, and concerns regarding reproducibility hinder further progress in this field. Recognizing the growing interest within the research community, there is an urgent need for a comprehensive, beginner-friendly, and accessible toolkit consisting of the most representative graph SSL algorithms. To address these challenges, we present a Graph SSL toolkit named PyG-SSL, which is built upon PyTorch and is compatible with various deep learning and scientific computing backends. Within the toolkit, we offer a unified framework encompassing dataset loading, hyper-parameter configuration, model training, and comprehensive performance evaluation for diverse downstream tasks. Moreover, we provide beginner-friendly tutorials and the best hyper-parameters of each graph SSL algorithm on different graph datasets, facilitating the reproduction of results. The GitHub repository of the library is https://github.com/iDEA-iSAIL-Lab-UIUC/pyg-ssl.

APEX$^2$: Adaptive and Extreme Summarization for Personalized Knowledge Graphs

Knowledge graphs (KGs), which store an extensive number of relational facts, serve various applications. Recently, personalized knowledge graphs (PKGs) have emerged as a solution to optimize storage costs by customizing their content to align with users' specific interests within particular domains. In the real world, on one hand, user queries and their underlying interests are inherently evolving, requiring PKGs to adapt continuously; on the other hand, the summarization is constantly expected to be as small as possible in terms of storage cost. However, the existing PKG summarization methods implicitly assume that the user's interests are constant and do not shift. Furthermore, when the size constraint of PKG is extremely small, the existing methods cannot distinguish which facts are more of immediate interest and guarantee the utility of the summarized PKG. To address these limitations, we propose APEX$^2$, a highly scalable PKG summarization framework designed with robust theoretical guarantees to excel in adaptive summarization tasks with extremely small size constraints. To be specific, after constructing an initial PKG, APEX$^2$ continuously tracks the interest shift and adjusts the previous summary. We evaluate APEX$^2$ under an evolving query setting on benchmark KGs containing up to 12 million triples, summarizing with compression ratios $\leq 0.1\%$. The experiments show that APEX outperforms state-of-the-art baselines in terms of both query-answering accuracy and efficiency.

Can Graph Neural Networks Learn Language with Extremely Weak Text Supervision?

While great success has been achieved in building vision models with Contrastive Language-Image Pre-training (CLIP) over Internet-scale image-text pairs, building transferable Graph Neural Networks (GNNs) with CLIP pipeline is challenging because of three fundamental issues: the scarcity of labeled data and text supervision, different levels of downstream tasks, and the conceptual gaps between domains. In this work, to address these issues, we leverage multi-modal prompt learning to effectively adapt pre-trained GNN to downstream tasks and data, given only a few semantically labeled samples, each with extremely weak text supervision. Our new paradigm embeds the graphs directly in the same space as the Large Language Models (LLMs) by learning both graph prompts and text prompts simultaneously. To accomplish this, we improve state-of-the-art graph prompt method, and then propose the first graph-language multi-modal prompt learning approach for exploiting the knowledge in pre-trained models. Notably, due to the insufficient supervision for fine-tuning, in our paradigm, the pre-trained GNN and the LLM are kept frozen, so the learnable parameters are much fewer than fine-tuning any pre-trained model. Through extensive experiments on real-world datasets, we demonstrate the superior performance of our paradigm in few-shot, multi-task-level, and cross-domain settings. Moreover, we build the first CLIP-style zero-shot classification prototype that can generalize GNNs to unseen classes with extremely weak text supervision.

Provably Extending PageRank-based Local Clustering Algorithm to Weighted Directed Graphs with Self-Loops and to Hypergraphs

Local clustering aims to find a compact cluster near the given starting instances. This work focuses on graph local clustering, which has broad applications beyond graphs because of the internal connectivities within various modalities. While most existing studies on local graph clustering adopt the discrete graph setting (i.e., unweighted graphs without self-loops), real-world graphs can be more complex. In this paper, we extend the non-approximating Andersen-Chung-Lang ("ACL") algorithm beyond discrete graphs and generalize its quadratic optimality to a wider range of graphs, including weighted, directed, and self-looped graphs and hypergraphs. Specifically, leveraging PageRank, we propose two algorithms: GeneralACL for graphs and HyperACL for hypergraphs. We theoretically prove that, under two mild conditions, both algorithms can identify a quadratically optimal local cluster in terms of conductance with at least 1/2 probability. On the property of hypergraphs, we address a fundamental gap in the literature by defining conductance for hypergraphs from the perspective of hypergraph random walks. Additionally, we provide experiments to validate our theoretical findings.

PageRank Bandits for Link Prediction

Link prediction is a critical problem in graph learning with broad applications such as recommender systems and knowledge graph completion. Numerous research efforts have been directed at solving this problem, including approaches based on similarity metrics and Graph Neural Networks (GNN). However, most existing solutions are still rooted in conventional supervised learning, which makes it challenging to adapt over time to changing customer interests and to address the inherent dilemma of exploitation versus exploration in link prediction. To tackle these challenges, this paper reformulates link prediction as a sequential decision-making process, where each link prediction interaction occurs sequentially. We propose a novel fusion algorithm, PRB (PageRank Bandits), which is the first to combine contextual bandits with PageRank for collaborative exploitation and exploration. We also introduce a new reward formulation and provide a theoretical performance guarantee for PRB. Finally, we extensively evaluate PRB in both online and offline settings, comparing it with bandit-based and graph-based methods. The empirical success of PRB demonstrates the value of the proposed fusion approach. Our code is released at https://github.com/jiaruzouu/PRB.

Hypergraphs as Weighted Directed Self-Looped Graphs: Spectral Properties, Clustering, Cheeger Inequality

Hypergraphs naturally arise when studying group relations and have been widely used in the field of machine learning. There has not been a unified formulation of hypergraphs, yet the recently proposed edge-dependent vertex weights (EDVW) modeling is one of the most generalized modeling methods of hypergraphs, i.e., most existing hypergraphs can be formulated as EDVW hypergraphs without any information loss to the best of our knowledge. However, the relevant algorithmic developments on EDVW hypergraphs remain nascent: compared to spectral graph theories, the formulations are incomplete, the spectral clustering algorithms are not well-developed, and one result regarding hypergraph Cheeger Inequality is even incorrect. To this end, deriving a unified random walk-based formulation, we propose our definitions of hypergraph Rayleigh Quotient, NCut, boundary/cut, volume, and conductance, which are consistent with the corresponding definitions on graphs. Then, we prove that the normalized hypergraph Laplacian is associated with the NCut value, which inspires our HyperClus-G algorithm for spectral clustering on EDVW hypergraphs. Finally, we prove that HyperClus-G can always find an approximately linearly optimal partitioning in terms of Both NCut and conductance. Additionally, we provide extensive experiments to validate our theoretical findings from an empirical perspective.

Learning Graph Quantized Tokenizers for Transformers

Transformers serve as the backbone architectures of Foundational Models, where a domain-specific tokenizer helps them adapt to various domains. Graph Transformers (GTs) have recently emerged as a leading model in geometric deep learning, outperforming Graph Neural Networks (GNNs) in various graph learning tasks. However, the development of tokenizers for graphs has lagged behind other modalities, with existing approaches relying on heuristics or GNNs co-trained with Transformers. To address this, we introduce GQT (\textbf{G}raph \textbf{Q}uantized \textbf{T}okenizer), which decouples tokenizer training from Transformer training by leveraging multi-task graph self-supervised learning, yielding robust and generalizable graph tokens. Furthermore, the GQT utilizes Residual Vector Quantization (RVQ) to learn hierarchical discrete tokens, resulting in significantly reduced memory requirements and improved generalization capabilities. By combining the GQT with token modulation, a Transformer encoder achieves state-of-the-art performance on 16 out of 18 benchmarks, including large-scale homophilic and heterophilic datasets. The code is available at: https://github.com/limei0307/graph-tokenizer