WIMMICS
Abstract:This paper revisits our pipeline called Syllogistic Evaluation Framework-Common Logic Grammar Construction (SEF-CLGC). We combine formal logical notations with Small Language Models (SLMs) to evaluate reasoning performance on the SemEval-2026 Task 11 Subtask 1: Disentangling Content and Formal Reasoning in Large Language Models. Our experiments show that by relying solely on SLMs, trained on a combination of natural and symbolic languages, our best model achieves a content score of 27.80% on the task while significantly lowering the content bias in reasoning.
Abstract:Embedding models (KGEMs) constitute the main link prediction approach to complete knowledge graphs. Standard evaluation protocols emphasize rank-based metrics such as MRR or Hits@$K$, but usually overlook the influence of random seeds on result stability. Moreover, these metrics conceal potential instabilities in individual predictions and in the organization of embedding spaces. In this work, we conduct a systematic stability analysis of multiple KGEMs across several datasets. We find that high-performance models actually produce divergent predictions at the triple level and highly variable embedding spaces. By isolating stochastic factors (i.e., initialization, triple ordering, negative sampling, dropout, hardware), we show that each independently induces instability of comparable magnitude. Furthermore, for a given model, hyperparameter configurations with better MRR are not guaranteed to be more stable. Moreover, voting, albeit a known remediation mechanism, only provides a limited enhancement of stability. These findings highlight critical limitations of current benchmarking protocols, and raise concerns about the reliability of KGEMs for knowledge graph completion.
Abstract:Emerging digital technologies are exacerbating the existing divide in Open Access Data (OAD) between high-and low-resource languages, excluding many communities from the global digital transformation. Multilingual Linked Open Data Knowledge Graphs (LOD KGs) could contribute to mitigating this divide through cross-lingual transfer; however, no clear quantitative definition of low-resource languages has yet been established in the context of LOD KGs. In this poster, we present a methodology to analyze the distribution of languages across LOD KGs and propose a preliminary multi-level categorization based on DBpedia, BabelNet, and Wikidata. This categorization is leveraged to bring a formal definition of low-, high-, and medium-resource languages that could be later leveraged to select cross-lingual transfer candidates.
Abstract:Over the last decade, knowledge graphs have multiplied, grown, and evolved on the World Wide Web, and the advent of new standards, vocabularies, and application domains has accelerated this trend. IndeGx is a framework leveraging an extensible base of rules to index the content of KGs and the capacities of their SPARQL endpoints. In this article, we show how knowledge representation (KR) and reasoning methods and techniques can be used in a reflexive manner to index and characterize existing knowledge graphs (KG) with respect to their usage of KR methods and techniques. We extended IndeGx with a fully ontology-oriented modeling and processing approach to do so. Using SPARQL rules and an OWL RL ontology of the indexing domain, IndeGx can now build and reason over an index of the contents and characteristics of an open collection of public knowledge graphs. Our extension of the framework relies on a declarative representation of procedural knowledge and collaborative environments (e.g., GitHub) to provide an agile, customizable, and expressive KR approach for building and maintaining such an index of knowledge graphs in the wild. In doing so, we help anyone answer the question of what knowledge is out there in the world wild Semantic Web in general, and we also help our community monitor which KR research results are used in practice. In particular, this article provides a snapshot of the state of the Semantic Web regarding supported standard languages, ontology usage, and diverse quality evaluations by applying this method to a collection of over 300 open knowledge graph endpoints.
Abstract:Knowledge graphs (KGs) have become ubiquitous publicly available knowledge sources, and are nowadays covering an ever increasing array of domains. However, not all knowledge represented is useful or pertaining when considering a new application or specific task. Also, due to their increasing size, handling large KGs in their entirety entails scalability issues. These two aspects asks for efficient methods to extract subgraphs of interest from existing KGs. To this aim, we introduce KGPrune, a Web Application that, given seed entities of interest and properties to traverse, extracts their neighboring subgraphs from Wikidata. To avoid topical drift, KGPrune relies on a frugal pruning algorithm based on analogical reasoning to only keep relevant neighbors while pruning irrelevant ones. The interest of KGPrune is illustrated by two concrete applications, namely, bootstrapping an enterprise KG and extracting knowledge related to looted artworks.




Abstract:Knowledge graphs (KGs) comprise entities interconnected by relations of different semantic meanings. KGs are being used in a wide range of applications. However, they inherently suffer from incompleteness, i.e. entities or facts about entities are missing. Consequently, a larger body of works focuses on the completion of missing information in KGs, which is commonly referred to as link prediction (LP). This task has traditionally and extensively been studied in the transductive setting, where all entities and relations in the testing set are observed during training. Recently, several works have tackled the LP task under more challenging settings, where entities and relations in the test set may be unobserved during training, or appear in only a few facts. These works are known as inductive, few-shot, and zero-shot link prediction. In this work, we conduct a systematic review of existing works in this area. A thorough analysis leads us to point out the undesirable existence of diverging terminologies and task definitions for the aforementioned settings, which further limits the possibility of comparison between recent works. We consequently aim at dissecting each setting thoroughly, attempting to reveal its intrinsic characteristics. A unifying nomenclature is ultimately proposed to refer to each of them in a simple and consistent manner.

Abstract:The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven, as they produce and consume vast amounts of scientific data, much of which is intrinsically relational and graph-structured. The volume of data and the complexity of scientific concepts and relations referred to therein promote the application of advanced knowledge-driven technologies for managing and interpreting data, with the ultimate aim to advance scientific discovery. In this survey and position paper, we discuss recent developments and advances in the use of graph-based technologies in life sciences and set out a vision for how these technologies will impact these fields into the future. We focus on three broad topics: the construction and management of Knowledge Graphs (KGs), the use of KGs and associated technologies in the discovery of new knowledge, and the use of KGs in artificial intelligence applications to support explanations (explainable AI). We select a few exemplary use cases for each topic, discuss the challenges and open research questions within these topics, and conclude with a perspective and outlook that summarizes the overarching challenges and their potential solutions as a guide for future research.
Abstract:Knowledge graphs (KGs) have emerged as a prominent data representation and management paradigm. Being usually underpinned by a schema (e.g. an ontology), KGs capture not only factual information but also contextual knowledge. In some tasks, a few KGs established themselves as standard benchmarks. However, recent works outline that relying on a limited collection of datasets is not sufficient to assess the generalization capability of an approach. In some data-sensitive fields such as education or medicine, access to public datasets is even more limited. To remedy the aforementioned issues, we release PyGraft, a Python-based tool that generates highly customized, domain-agnostic schemas and knowledge graphs. The synthesized schemas encompass various RDFS and OWL constructs, while the synthesized KGs emulate the characteristics and scale of real-world KGs. Logical consistency of the generated resources is ultimately ensured by running a description logic (DL) reasoner. By providing a way of generating both a schema and KG in a single pipeline, PyGraft's aim is to empower the generation of a more diverse array of KGs for benchmarking novel approaches in areas such as graph-based machine learning (ML), or more generally KG processing. In graph-based ML in particular, this should foster a more holistic evaluation of model performance and generalization capability, thereby going beyond the limited collection of available benchmarks. PyGraft is available at: https://github.com/nicolas-hbt/pygraft.




Abstract:Knowledge Graph Construction (KGC) can be seen as an iterative process starting from a high quality nucleus that is refined by knowledge extraction approaches in a virtuous loop. Such a nucleus can be obtained from knowledge existing in an open KG like Wikidata. However, due to the size of such generic KGs, integrating them as a whole may entail irrelevant content and scalability issues. We propose an analogy-based approach that starts from seed entities of interest in a generic KG, and keeps or prunes their neighboring entities. We evaluate our approach on Wikidata through two manually labeled datasets that contain either domain-homogeneous or -heterogeneous seed entities. We empirically show that our analogy-based approach outperforms LSTM, Random Forest, SVM, and MLP, with a drastically lower number of parameters. We also evaluate its generalization potential in a transfer learning setting. These results advocate for the further integration of analogy-based inference in tasks related to the KG lifecycle.




Abstract:Knowledge graph embedding models (KGEMs) have gained considerable traction in recent years. These models learn a vector representation of knowledge graph entities and relations, a.k.a. knowledge graph embeddings (KGEs). Learning versatile KGEs is desirable as it makes them useful for a broad range of tasks. However, KGEMs are usually trained for a specific task, which makes their embeddings task-dependent. In parallel, the widespread assumption that KGEMs actually create a semantic representation of the underlying entities and relations (e.g., project similar entities closer than dissimilar ones) has been challenged. In this work, we design heuristics for generating protographs -- small, modified versions of a KG that leverage schema-based information. The learnt protograph-based embeddings are meant to encapsulate the semantics of a KG, and can be leveraged in learning KGEs that, in turn, also better capture semantics. Extensive experiments on various evaluation benchmarks demonstrate the soundness of this approach, which we call Modular and Agnostic SCHema-based Integration of protograph Embeddings (MASCHInE). In particular, MASCHInE helps produce more versatile KGEs that yield substantially better performance for entity clustering and node classification tasks. For link prediction, using MASCHInE has little impact on rank-based performance but increases the number of semantically valid predictions.