TPIE: Topology-Preserved Image Editing With Text Instructions

Preserving topological structures is important in real-world applications, particularly in sensitive domains such as healthcare and medicine, where the correctness of human anatomy is critical. However, most existing image editing models focus on manipulating intensity and texture features, often overlooking object geometry within images. To address this issue, this paper introduces a novel method, Topology-Preserved Image Editing with text instructions (TPIE), that for the first time ensures the topology and geometry remaining intact in edited images through text-guided generative diffusion models. More specifically, our method treats newly generated samples as deformable variations of a given input template, allowing for controllable and structure-preserving edits. Our proposed TPIE framework consists of two key modules: (i) an autoencoder-based registration network that learns latent representations of object transformations, parameterized by velocity fields, from pairwise training images; and (ii) a novel latent conditional geometric diffusion (LCDG) model efficiently capturing the data distribution of learned transformation features conditioned on custom-defined text instructions. We validate TPIE on a diverse set of 2D and 3D images and compare them with state-of-the-art image editing approaches. Experimental results show that our method outperforms other baselines in generating more realistic images with well-preserved topology. Our code will be made publicly available on Github.

Invariant Shape Representation Learning For Image Classification

Geometric shape features have been widely used as strong predictors for image classification. Nevertheless, most existing classifiers such as deep neural networks (DNNs) directly leverage the statistical correlations between these shape features and target variables. However, these correlations can often be spurious and unstable across different environments (e.g., in different age groups, certain types of brain changes have unstable relations with neurodegenerative disease); hence leading to biased or inaccurate predictions. In this paper, we introduce a novel framework that for the first time develops invariant shape representation learning (ISRL) to further strengthen the robustness of image classifiers. In contrast to existing approaches that mainly derive features in the image space, our model ISRL is designed to jointly capture invariant features in latent shape spaces parameterized by deformable transformations. To achieve this goal, we develop a new learning paradigm based on invariant risk minimization (IRM) to learn invariant representations of image and shape features across multiple training distributions/environments. By embedding the features that are invariant with regard to target variables in different environments, our model consistently offers more accurate predictions. We validate our method by performing classification tasks on both simulated 2D images, real 3D brain and cine cardiovascular magnetic resonance images (MRIs). Our code is publicly available at https://github.com/tonmoy-hossain/ISRL.

Learning Geodesics of Geometric Shape Deformations From Images

This paper presents a novel method, named geodesic deformable networks (GDN), that for the first time enables the learning of geodesic flows of deformation fields derived from images. In particular, the capability of our proposed GDN being able to predict geodesics is important for quantifying and comparing deformable shape presented in images. The geodesic deformations, also known as optimal transformations that align pairwise images, are often parameterized by a time sequence of smooth vector fields governed by nonlinear differential equations. A bountiful literature has been focusing on learning the initial conditions (e.g., initial velocity fields) based on registration networks. However, the definition of geodesics central to deformation-based shape analysis is blind to the networks. To address this problem, we carefully develop an efficient neural operator to treat the geodesics as unknown mapping functions learned from the latent deformation spaces. A composition of integral operators and smooth activation functions is then formulated to effectively approximate such mappings. In contrast to previous works, our GDN jointly optimizes a newly defined geodesic loss, which adds additional benefits to promote the network regularizability and generalizability. We demonstrate the effectiveness of GDN on both 2D synthetic data and 3D real brain magnetic resonance imaging (MRI).

Interior Object Geometry via Fitted Frames

We describe a representation targeted for anatomic objects which is designed to enable strong locational correspondence within object populations and thus to provide powerful object statistics. The method generates fitted frames on the boundary and in the interior of objects and produces alignment-free geometric features from them. It accomplishes this by understanding an object as the diffeomorphic deformation of an ellipsoid and using a skeletal representation fitted throughout the deformation to produce a model of the target object, where the object is provided initially in the form of a boundary mesh. Via classification performance on hippocampi shape between individuals with a disorder vs. others, we compare our method to two state-of-the-art methods for producing object representations that are intended to capture geometric correspondence across a population of objects and to yield geometric features useful for statistics, and we show improved classification performance by this new representation, which we call the evolutionary s-rep. The geometric features that are derived from each of the representations, especially via fitted frames, is discussed.

TLRN: Temporal Latent Residual Networks For Large Deformation Image Registration

This paper presents a novel approach, termed {\em Temporal Latent Residual Network (TLRN)}, to predict a sequence of deformation fields in time-series image registration. The challenge of registering time-series images often lies in the occurrence of large motions, especially when images differ significantly from a reference (e.g., the start of a cardiac cycle compared to the peak stretching phase). To achieve accurate and robust registration results, we leverage the nature of motion continuity and exploit the temporal smoothness in consecutive image frames. Our proposed TLRN highlights a temporal residual network with residual blocks carefully designed in latent deformation spaces, which are parameterized by time-sequential initial velocity fields. We treat a sequence of residual blocks over time as a dynamic training system, where each block is designed to learn the residual function between desired deformation features and current input accumulated from previous time frames. We validate the effectivenss of TLRN on both synthetic data and real-world cine cardiac magnetic resonance (CMR) image videos. Our experimental results shows that TLRN is able to achieve substantially improved registration accuracy compared to the state-of-the-art. Our code is publicly available at https://github.com/nellie689/TLRN.

LaMoD: Latent Motion Diffusion Model For Myocardial Strain Generation

Motion and deformation analysis of cardiac magnetic resonance (CMR) imaging videos is crucial for assessing myocardial strain of patients with abnormal heart functions. Recent advances in deep learning-based image registration algorithms have shown promising results in predicting motion fields from routinely acquired CMR sequences. However, their accuracy often diminishes in regions with subtle appearance change, with errors propagating over time. Advanced imaging techniques, such as displacement encoding with stimulated echoes (DENSE) CMR, offer highly accurate and reproducible motion data but require additional image acquisition, which poses challenges in busy clinical flows. In this paper, we introduce a novel Latent Motion Diffusion model (LaMoD) to predict highly accurate DENSE motions from standard CMR videos. More specifically, our method first employs an encoder from a pre-trained registration network that learns latent motion features (also considered as deformation-based shape features) from image sequences. Supervised by the ground-truth motion provided by DENSE, LaMoD then leverages a probabilistic latent diffusion model to reconstruct accurate motion from these extracted features. Experimental results demonstrate that our proposed method, LaMoD, significantly improves the accuracy of motion analysis in standard CMR images; hence improving myocardial strain analysis in clinical settings for cardiac patients. Our code will be publicly available on upon acceptance.

Multimodal Learning To Improve Cardiac Late Mechanical Activation Detection From Cine MR Images

This paper presents a multimodal deep learning framework that utilizes advanced image techniques to improve the performance of clinical analysis heavily dependent on routinely acquired standard images. More specifically, we develop a joint learning network that for the first time leverages the accuracy and reproducibility of myocardial strains obtained from Displacement Encoding with Stimulated Echo (DENSE) to guide the analysis of cine cardiac magnetic resonance (CMR) imaging in late mechanical activation (LMA) detection. An image registration network is utilized to acquire the knowledge of cardiac motions, an important feature estimator of strain values, from standard cine CMRs. Our framework consists of two major components: (i) a DENSE-supervised strain network leveraging latent motion features learned from a registration network to predict myocardial strains; and (ii) a LMA network taking advantage of the predicted strain for effective LMA detection. Experimental results show that our proposed work substantially improves the performance of strain analysis and LMA detection from cine CMR images, aligning more closely with the achievements of DENSE.

An end-to-end deep learning pipeline to derive blood input with partial volume corrections for automated parametric brain PET mapping

Dynamic 2-[18F] fluoro-2-deoxy-D-glucose positron emission tomography (dFDG-PET) for human brain imaging has considerable clinical potential, yet its utilization remains limited. A key challenge in the quantitative analysis of dFDG-PET is characterizing a patient-specific blood input function, traditionally reliant on invasive arterial blood sampling. This research introduces a novel approach employing non-invasive deep learning model-based computations from the internal carotid arteries (ICA) with partial volume (PV) corrections, thereby eliminating the need for invasive arterial sampling. We present an end-to-end pipeline incorporating a 3D U-Net based ICA-net for ICA segmentation, alongside a Recurrent Neural Network (RNN) based MCIF-net for the derivation of a model-corrected blood input function (MCIF) with PV corrections. The developed 3D U-Net and RNN was trained and validated using a 5-fold cross-validation approach on 50 human brain FDG PET datasets. The ICA-net achieved an average Dice score of 82.18% and an Intersection over Union of 68.54% across all tested scans. Furthermore, the MCIF-net exhibited a minimal root mean squared error of 0.0052. The application of this pipeline to ground truth data for dFDG-PET brain scans resulted in the precise localization of seizure onset regions, which contributed to a successful clinical outcome, with the patient achieving a seizure-free state after treatment. These results underscore the efficacy of the ICA-net and MCIF-net deep learning pipeline in learning the ICA structure's distribution and automating MCIF computation with PV corrections. This advancement marks a significant leap in non-invasive neuroimaging.

MGAug: Multimodal Geometric Augmentation in Latent Spaces of Image Deformations

Geometric transformations have been widely used to augment the size of training images. Existing methods often assume a unimodal distribution of the underlying transformations between images, which limits their power when data with multimodal distributions occur. In this paper, we propose a novel model, Multimodal Geometric Augmentation (MGAug), that for the first time generates augmenting transformations in a multimodal latent space of geometric deformations. To achieve this, we first develop a deep network that embeds the learning of latent geometric spaces of diffeomorphic transformations (a.k.a. diffeomorphisms) in a variational autoencoder (VAE). A mixture of multivariate Gaussians is formulated in the tangent space of diffeomorphisms and serves as a prior to approximate the hidden distribution of image transformations. We then augment the original training dataset by deforming images using randomly sampled transformations from the learned multimodal latent space of VAE. To validate the efficiency of our model, we jointly learn the augmentation strategy with two distinct domain-specific tasks: multi-class classification on 2D synthetic datasets and segmentation on real 3D brain magnetic resonance images (MRIs). We also compare MGAug with state-of-the-art transformation-based image augmentation algorithms. Experimental results show that our proposed approach outperforms all baselines by significantly improved prediction accuracy. Our code is publicly available at https://github.com/tonmoy-hossain/MGAug.

Implement services for business scenarios by combining basic emulators

This article mainly introduces how to use various basic emulators to form a combined emulator in the Jiutian Intelligence Network Simulation Platform to realize simulation service functions in different business scenarios. Among them, the combined emulator is included. The business scenarios include different practical applications such as multi-objective antenna optimization, high traffic of business, CSI (channel state information) compression feedback, etc.