HMSViT: A Hierarchical Masked Self-Supervised Vision Transformer for Corneal Nerve Segmentation and Diabetic Neuropathy Diagnosis

Diabetic Peripheral Neuropathy (DPN) affects nearly half of diabetes patients, requiring early detection. Corneal Confocal Microscopy (CCM) enables non-invasive diagnosis, but automated methods suffer from inefficient feature extraction, reliance on handcrafted priors, and data limitations. We propose HMSViT, a novel Hierarchical Masked Self-Supervised Vision Transformer (HMSViT) designed for corneal nerve segmentation and DPN diagnosis. Unlike existing methods, HMSViT employs pooling-based hierarchical and dual attention mechanisms with absolute positional encoding, enabling efficient multi-scale feature extraction by capturing fine-grained local details in early layers and integrating global context in deeper layers, all at a lower computational cost. A block-masked self supervised learning framework is designed for the HMSViT that reduces reliance on labelled data, enhancing feature robustness, while a multi-scale decoder is used for segmentation and classification by fusing hierarchical features. Experiments on clinical CCM datasets showed HMSViT achieves state-of-the-art performance, with 61.34% mIoU for nerve segmentation and 70.40% diagnostic accuracy, outperforming leading hierarchical models like the Swin Transformer and HiViT by margins of up to 6.39% in segmentation accuracy while using fewer parameters. Detailed ablation studies further reveal that integrating block-masked SSL with hierarchical multi-scale feature extraction substantially enhances performance compared to conventional supervised training. Overall, these comprehensive experiments confirm that HMSViT delivers excellent, robust, and clinically viable results, demonstrating its potential for scalable deployment in real-world diagnostic applications.

Deep Learning Meets Process-Based Models: A Hybrid Approach to Agricultural Challenges

Process-based models (PBMs) and deep learning (DL) are two key approaches in agricultural modelling, each offering distinct advantages and limitations. PBMs provide mechanistic insights based on physical and biological principles, ensuring interpretability and scientific rigour. However, they often struggle with scalability, parameterisation, and adaptation to heterogeneous environments. In contrast, DL models excel at capturing complex, nonlinear patterns from large datasets but may suffer from limited interpretability, high computational demands, and overfitting in data-scarce scenarios. This study presents a systematic review of PBMs, DL models, and hybrid PBM-DL frameworks, highlighting their applications in agricultural and environmental modelling. We classify hybrid PBM-DL approaches into DL-informed PBMs, where neural networks refine process-based models, and PBM-informed DL, where physical constraints guide deep learning predictions. Additionally, we conduct a case study on crop dry biomass prediction, comparing hybrid models against standalone PBMs and DL models under varying data quality, sample sizes, and spatial conditions. The results demonstrate that hybrid models consistently outperform traditional PBMs and DL models, offering greater robustness to noisy data and improved generalisation across unseen locations. Finally, we discuss key challenges, including model interpretability, scalability, and data requirements, alongside actionable recommendations for advancing hybrid modelling in agriculture. By integrating domain knowledge with AI-driven approaches, this study contributes to the development of scalable, interpretable, and reproducible agricultural models that support data-driven decision-making for sustainable agriculture.

TabulaTime: A Novel Multimodal Deep Learning Framework for Advancing Acute Coronary Syndrome Prediction through Environmental and Clinical Data Integration

Acute Coronary Syndromes (ACS), including ST-segment elevation myocardial infarctions (STEMI) and non-ST-segment elevation myocardial infarctions (NSTEMI), remain a leading cause of mortality worldwide. Traditional cardiovascular risk scores rely primarily on clinical data, often overlooking environmental influences like air pollution that significantly impact heart health. Moreover, integrating complex time-series environmental data with clinical records is challenging. We introduce TabulaTime, a multimodal deep learning framework that enhances ACS risk prediction by combining clinical risk factors with air pollution data. TabulaTime features three key innovations: First, it integrates time-series air pollution data with clinical tabular data to improve prediction accuracy. Second, its PatchRWKV module automatically extracts complex temporal patterns, overcoming limitations of traditional feature engineering while maintaining linear computational complexity. Third, attention mechanisms enhance interpretability by revealing interactions between clinical and environmental factors. Experimental results show that TabulaTime improves prediction accuracy by over 20% compared to conventional models such as CatBoost, Random Forest, and LightGBM, with air pollution data alone contributing over a 10% improvement. Feature importance analysis identifies critical predictors including previous angina, systolic blood pressure, PM10, and NO2. Overall, TabulaTime bridges clinical and environmental insights, supporting personalized prevention strategies and informing public health policies to mitigate ACS risk.

GP-GS: Gaussian Processes for Enhanced Gaussian Splatting

3D Gaussian Splatting has emerged as an efficient photorealistic novel view synthesis method. However, its reliance on sparse Structure-from-Motion (SfM) point clouds consistently compromises the scene reconstruction quality. To address these limitations, this paper proposes a novel 3D reconstruction framework Gaussian Processes Gaussian Splatting (GP-GS), where a multi-output Gaussian Process model is developed to achieve adaptive and uncertainty-guided densification of sparse SfM point clouds. Specifically, we propose a dynamic sampling and filtering pipeline that adaptively expands the SfM point clouds by leveraging GP-based predictions to infer new candidate points from the input 2D pixels and depth maps. The pipeline utilizes uncertainty estimates to guide the pruning of high-variance predictions, ensuring geometric consistency and enabling the generation of dense point clouds. The densified point clouds provide high-quality initial 3D Gaussians to enhance reconstruction performance. Extensive experiments conducted on synthetic and real-world datasets across various scales validate the effectiveness and practicality of the proposed framework.

WaveDiffUR: A diffusion SDE-based solver for ultra magnification super-resolution in remote sensing images

Deep neural networks have recently achieved significant advancements in remote sensing superresolu-tion (SR). However, most existing methods are limited to low magnification rates (e.g., 2 or 4) due to the escalating ill-posedness at higher magnification scales. To tackle this challenge, we redefine high-magnification SR as the ultra-resolution (UR) problem, reframing it as solving a conditional diffusion stochastic differential equation (SDE). In this context, we propose WaveDiffUR, a novel wavelet-domain diffusion UR solver that decomposes the UR process into sequential sub-processes addressing conditional wavelet components. WaveDiffUR iteratively reconstructs low-frequency wavelet details (ensuring global consistency) and high-frequency components (enhancing local fidelity) by incorporating pre-trained SR models as plug-and-play modules. This modularity mitigates the ill-posedness of the SDE and ensures scalability across diverse applications. To address limitations in fixed boundary conditions at extreme magnifications, we introduce the cross-scale pyramid (CSP) constraint, a dynamic and adaptive framework that guides WaveDiffUR in generating fine-grained wavelet details, ensuring consistent and high-fidelity outputs even at extreme magnification rates.

A Novel Spike Transformer Network for Depth Estimation from Event Cameras via Cross-modality Knowledge Distillation

Depth estimation is crucial for interpreting complex environments, especially in areas such as autonomous vehicle navigation and robotics. Nonetheless, obtaining accurate depth readings from event camera data remains a formidable challenge. Event cameras operate differently from traditional digital cameras, continuously capturing data and generating asynchronous binary spikes that encode time, location, and light intensity. Yet, the unique sampling mechanisms of event cameras render standard image based algorithms inadequate for processing spike data. This necessitates the development of innovative, spike-aware algorithms tailored for event cameras, a task compounded by the irregularity, continuity, noise, and spatial and temporal characteristics inherent in spiking data.Harnessing the strong generalization capabilities of transformer neural networks for spatiotemporal data, we propose a purely spike-driven spike transformer network for depth estimation from spiking camera data. To address performance limitations with Spiking Neural Networks (SNN), we introduce a novel single-stage cross-modality knowledge transfer framework leveraging knowledge from a large vision foundational model of artificial neural networks (ANN) (DINOv2) to enhance the performance of SNNs with limited data. Our experimental results on both synthetic and real datasets show substantial improvements over existing models, with notable gains in Absolute Relative and Square Relative errors (49% and 39.77% improvements over the benchmark model Spike-T, respectively). Besides accuracy, the proposed model also demonstrates reduced power consumptions, a critical factor for practical applications.

A Fast Fourier Convolutional Deep Neural Network For Accurate and Explainable Discrimination Of Wheat Yellow Rust And Nitrogen Deficiency From Sentinel-2 Time-Series Data

Accurate and timely detection of plant stress is essential for yield protection, allowing better-targeted intervention strategies. Recent advances in remote sensing and deep learning have shown great potential for rapid non-invasive detection of plant stress in a fully automated and reproducible manner. However, the existing models always face several challenges: 1) computational inefficiency and the misclassifications between the different stresses with similar symptoms; and 2) the poor interpretability of the host-stress interaction. In this work, we propose a novel fast Fourier Convolutional Neural Network (FFDNN) for accurate and explainable detection of two plant stresses with similar symptoms (i.e. Wheat Yellow Rust And Nitrogen Deficiency). Specifically, unlike the existing CNN models, the main components of the proposed model include: 1) a fast Fourier convolutional block, a newly fast Fourier transformation kernel as the basic perception unit, to substitute the traditional convolutional kernel to capture both local and global responses to plant stress in various time-scale and improve computing efficiency with reduced learning parameters in Fourier domain; 2) Capsule Feature Encoder to encapsulate the extracted features into a series of vector features to represent part-to-whole relationship with the hierarchical structure of the host-stress interactions of the specific stress. In addition, in order to alleviate over-fitting, a photochemical vegetation indices-based filter is placed as pre-processing operator to remove the non-photochemical noises from the input Sentinel-2 time series.

A generic self-supervised learning (SSL) framework for representation learning from spectra-spatial feature of unlabeled remote sensing imagery

Remote sensing data has been widely used for various Earth Observation (EO) missions such as land use and cover classification, weather forecasting, agricultural management, and environmental monitoring. Most existing remote sensing data-based models are based on supervised learning that requires large and representative human-labelled data for model training, which is costly and time-consuming. Recently, self-supervised learning (SSL) enables the models to learn a representation from orders of magnitude more unlabelled data. This representation has been proven to boost the performance of downstream tasks and has potential for remote sensing applications. The success of SSL is heavily dependent on a pre-designed pretext task, which introduces an inductive bias into the model from a large amount of unlabelled data. Since remote sensing imagery has rich spectral information beyond the standard RGB colour space, the pretext tasks established in computer vision based on RGB images may not be straightforward to be extended to the multi/hyperspectral domain. To address this challenge, this work has designed a novel SSL framework that is capable of learning representation from both spectra-spatial information of unlabelled data. The framework contains two novel pretext tasks for object-based and pixel-based remote sensing data analysis methods, respectively. Through two typical downstream tasks evaluation (a multi-label land cover classification task on Sentienl-2 multispectral datasets and a ground soil parameter retrieval task on hyperspectral datasets), the results demonstrate that the representation obtained through the proposed SSL achieved a significant improvement in model performance.

A Generic Performance Model for Deep Learning in a Distributed Environment

Performance modelling of a deep learning application is essential to improve and quantify the efficiency of the model framework. However, existing performance models are mostly case-specific, with limited capability for the new deep learning frameworks/applications. In this paper, we propose a generic performance model of an application in a distributed environment with a generic expression of the application execution time that considers the influence of both intrinsic factors/operations (e.g. algorithmic parameters/internal operations) and extrinsic scaling factors (e.g. the number of processors, data chunks and batch size). We formulate it as a global optimization problem and solve it using regularization on a cost function and differential evolution algorithm to find the best-fit values of the constants in the generic expression to match the experimentally determined computation time. We have evaluated the proposed model on three deep learning frameworks (i.e., TensorFlow, MXnet, and Pytorch). The experimental results show that the proposed model can provide accurate performance predictions and interpretability. In addition, the proposed work can be applied to any distributed deep neural network without instrumenting the code and provides insight into the factors affecting performance and scalability.

sMRI-PatchNet: A novel explainable patch-based deep learning network for Alzheimer's disease diagnosis and discriminative atrophy localisation with Structural MRI

Structural magnetic resonance imaging (sMRI) can identify subtle brain changes due to its high contrast for soft tissues and high spatial resolution. It has been widely used in diagnosing neurological brain diseases, such as Alzheimer disease (AD). However, the size of 3D high-resolution data poses a significant challenge for data analysis and processing. Since only a few areas of the brain show structural changes highly associated with AD, the patch-based methods dividing the whole image data into several small regular patches have shown promising for more efficient sMRI-based image analysis. The major challenges of the patch-based methods on sMRI include identifying the discriminative patches, combining features from the discrete discriminative patches, and designing appropriate classifiers. This work proposes a novel patch-based deep learning network (sMRI-PatchNet) with explainable patch localisation and selection for AD diagnosis using sMRI. Specifically, it consists of two primary components: 1) A fast and efficient explainable patch selection mechanism for determining the most discriminative patches based on computing the SHapley Additive exPlanations (SHAP) contribution to a transfer learning model for AD diagnosis on massive medical data; and 2) A novel patch-based network for extracting deep features and AD classfication from the selected patches with position embeddings to retain position information, capable of capturing the global and local information of inter- and intra-patches. This method has been applied for the AD classification and the prediction of the transitional state moderate cognitive impairment (MCI) conversion with real datasets.