A Learning Search Algorithm for the Restricted Longest Common Subsequence Problem

This paper addresses the Restricted Longest Common Subsequence (RLCS) problem, an extension of the well-known Longest Common Subsequence (LCS) problem. This problem has significant applications in bioinformatics, particularly for identifying similarities and discovering mutual patterns and important motifs among DNA, RNA, and protein sequences. Building on recent advancements in solving this problem through a general search framework, this paper introduces two novel heuristic approaches designed to enhance the search process by steering it towards promising regions in the search space. The first heuristic employs a probabilistic model to evaluate partial solutions during the search process. The second heuristic is based on a neural network model trained offline using a genetic algorithm. A key aspect of this approach is extracting problem-specific features of partial solutions and the complete problem instance. An effective hybrid method, referred to as the learning beam search, is developed by combining the trained neural network model with a beam search framework. An important contribution of this paper is found in the generation of real-world instances where scientific abstracts serve as input strings, and a set of frequently occurring academic words from the literature are used as restricted patterns. Comprehensive experimental evaluations demonstrate the effectiveness of the proposed approaches in solving the RLCS problem. Finally, an empirical explainability analysis is applied to the obtained results. In this way, key feature combinations and their respective contributions to the success or failure of the algorithms across different problem types are identified.

Accelerating the k-means++ Algorithm by Using Geometric Information

In this paper, we propose an acceleration of the exact k-means++ algorithm using geometric information, specifically the Triangle Inequality and additional norm filters, along with a two-step sampling procedure. Our experiments demonstrate that the accelerated version outperforms the standard k-means++ version in terms of the number of visited points and distance calculations, achieving greater speedup as the number of clusters increases. The version utilizing the Triangle Inequality is particularly effective for low-dimensional data, while the additional norm-based filter enhances performance in high-dimensional instances with greater norm variance among points. Additional experiments show the behavior of our algorithms when executed concurrently across multiple jobs and examine how memory performance impacts practical speedup.

Metaheuristics and Large Language Models Join Forces: Towards an Integrated Optimization Approach

Since the rise of Large Language Models (LLMs) a couple of years ago, researchers in metaheuristics (MHs) have wondered how to use their power in a beneficial way within their algorithms. This paper introduces a novel approach that leverages LLMs as pattern recognition tools to improve MHs. The resulting hybrid method, tested in the context of a social network-based combinatorial optimization problem, outperforms existing state-of-the-art approaches that combine machine learning with MHs regarding the obtained solution quality. By carefully designing prompts, we demonstrate that the output obtained from LLMs can be used as problem knowledge, leading to improved results. Lastly, we acknowledge LLMs' potential drawbacks and limitations and consider it essential to examine them to advance this type of research further.

Large Language Models for the Automated Analysis of Optimization Algorithms

The ability of Large Language Models (LLMs) to generate high-quality text and code has fuelled their rise in popularity. In this paper, we aim to demonstrate the potential of LLMs within the realm of optimization algorithms by integrating them into STNWeb. This is a web-based tool for the generation of Search Trajectory Networks (STNs), which are visualizations of optimization algorithm behavior. Although visualizations produced by STNWeb can be very informative for algorithm designers, they often require a certain level of prior knowledge to be interpreted. In an attempt to bridge this knowledge gap, we have incorporated LLMs, specifically GPT-4, into STNWeb to produce extensive written reports, complemented by automatically generated plots, thereby enhancing the user experience and reducing the barriers to the adoption of this tool by the research community. Moreover, our approach can be expanded to other tools from the optimization community, showcasing the versatility and potential of LLMs in this field.

Saliency-Driven Hierarchical Learned Image Coding for Machines

We propose to employ a saliency-driven hierarchical neural image compression network for a machine-to-machine communication scenario following the compress-then-analyze paradigm. By that, different areas of the image are coded at different qualities depending on whether salient objects are located in the corresponding area. Areas without saliency are transmitted in latent spaces of lower spatial resolution in order to reduce the bitrate. The saliency information is explicitly derived from the detections of an object detection network. Furthermore, we propose to add saliency information to the training process in order to further specialize the different latent spaces. All in all, our hierarchical model with all proposed optimizations achieves 77.1 % bitrate savings over the latest video coding standard VVC on the Cityscapes dataset and with Mask R-CNN as analysis network at the decoder side. Thereby, it also outperforms traditional, non-hierarchical compression networks.

An Efficient Merge Search Matheuristic for Maximising the Net Present Value of Project Schedules

Resource constrained project scheduling is an important combinatorial optimisation problem with many practical applications. With complex requirements such as precedence constraints, limited resources, and finance-based objectives, finding optimal solutions for large problem instances is very challenging even with well-customised meta-heuristics and matheuristics. To address this challenge, we propose a new math-heuristic algorithm based on Merge Search and parallel computing to solve the resource constrained project scheduling with the aim of maximising the net present value. This paper presents a novel matheuristic framework designed for resource constrained project scheduling, Merge search, which is a variable partitioning and merging mechanism to formulate restricted mixed integer programs with the aim of improving an existing pool of solutions. The solution pool is obtained via a customised parallel ant colony optimisation algorithm, which is also capable of generating high quality solutions on its own. The experimental results show that the proposed method outperforms the current state-of-the-art algorithms on known benchmark problem instances. Further analyses also demonstrate that the proposed algorithm is substantially more efficient compared to its counterparts in respect to its convergence properties when considering multiple cores.

Robust Deep Neural Object Detection and Segmentation for Automotive Driving Scenario with Compressed Image Data

Deep neural object detection or segmentation networks are commonly trained with pristine, uncompressed data. However, in practical applications the input images are usually deteriorated by compression that is applied to efficiently transmit the data. Thus, we propose to add deteriorated images to the training process in order to increase the robustness of the two state-of-the-art networks Faster and Mask R-CNN. Throughout our paper, we investigate an autonomous driving scenario by evaluating the newly trained models on the Cityscapes dataset that has been compressed with the upcoming video coding standard Versatile Video Coding (VVC). When employing the models that have been trained with the proposed method, the weighted average precision of the R-CNNs can be increased by up to 3.68 percentage points for compressed input images, which corresponds to bitrate savings of nearly 48 %.

Synergistic Team Composition: A Computational Approach to Foster Diversity in Teams

Co-operative learning in heterogeneous teams refers to learning methods in which teams are organised both to accomplish academic tasks and for individuals to gain knowledge. Competencies, personality and the gender of team members are key factors that influence team performance. Here, we introduce a team composition problem, the so-called synergistic team composition problem (STCP), which incorporates such key factors when arranging teams. Thus, the goal of the STCP is to partition a set of individuals into a set of synergistic teams: teams that are diverse in personality and gender and whose members cover all required competencies to complete a task. Furthermore, the STCP requires that all teams are balanced in that they are expected to exhibit similar performances when completing the task. We propose two efficient algorithms to solve the STCP. Our first algorithm is based on a linear programming formulation and is appropriate to solve small instances of the problem. Our second algorithm is an anytime heuristic that is effective for large instances of the STCP. Finally, we thoroughly study the computational properties of both algorithms in an educational context when grouping students in a classroom into teams using actual-world data.

Generic CP-Supported CMSA for Binary Integer Linear Programs

Construct, Merge, Solve and Adapt (CMSA) is a general hybrid metaheuristic for solving combinatorial optimization problems. At each iteration, CMSA (1) constructs feasible solutions to the tackled problem instance in a probabilistic way and (2) solves a reduced problem instance (if possible) to optimality. The construction of feasible solutions is hereby problem-specific, usually involving a fast greedy heuristic. The goal of this paper is to design a problem-agnostic CMSA variant whose exclusive input is an integer linear program (ILP). In order to reduce the complexity of this task, the current study is restricted to binary ILPs. In addition to a basic problem-agnostic CMSA variant, we also present an extended version that makes use of a constraint propagation engine for constructing solutions. The results show that our technique is able to match the upper bounds of the standalone application of CPLEX in the context of rather easy-to-solve instances, while it generally outperforms the standalone application of CPLEX in the context of hard instances. Moreover, the results indicate that the support of the constraint propagation engine is useful in the context of problems for which finding feasible solutions is rather difficult.

A Hybrid Evolutionary Algorithm Based on Solution Merging for the Longest Arc-Preserving Common Subsequence Problem

The longest arc-preserving common subsequence problem is an NP-hard combinatorial optimization problem from the field of computational biology. This problem finds applications, in particular, in the comparison of arc-annotated Ribonucleic acid (RNA) sequences. In this work we propose a simple, hybrid evolutionary algorithm to tackle this problem. The most important feature of this algorithm concerns a crossover operator based on solution merging. In solution merging, two or more solutions to the problem are merged, and an exact technique is used to find the best solution within this union. It is experimentally shown that the proposed algorithm outperforms a heuristic from the literature.