Society of Medical Simplifiers

Medical text simplification is crucial for making complex biomedical literature more accessible to non-experts. Traditional methods struggle with the specialized terms and jargon of medical texts, lacking the flexibility to adapt the simplification process dynamically. In contrast, recent advancements in large language models (LLMs) present unique opportunities by offering enhanced control over text simplification through iterative refinement and collaboration between specialized agents. In this work, we introduce the Society of Medical Simplifiers, a novel LLM-based framework inspired by the "Society of Mind" (SOM) philosophy. Our approach leverages the strengths of LLMs by assigning five distinct roles, i.e., Layperson, Simplifier, Medical Expert, Language Clarifier, and Redundancy Checker, organized into interaction loops. This structure allows the agents to progressively improve text simplification while maintaining the complexity and accuracy of the original content. Evaluations on the Cochrane text simplification dataset demonstrate that our framework is on par with or outperforms state-of-the-art methods, achieving superior readability and content preservation through controlled simplification processes.

SciGisPy: a Novel Metric for Biomedical Text Simplification via Gist Inference Score

Biomedical literature is often written in highly specialized language, posing significant comprehension challenges for non-experts. Automatic text simplification (ATS) offers a solution by making such texts more accessible while preserving critical information. However, evaluating ATS for biomedical texts is still challenging due to the limitations of existing evaluation metrics. General-domain metrics like SARI, BLEU, and ROUGE focus on surface-level text features, and readability metrics like FKGL and ARI fail to account for domain-specific terminology or assess how well the simplified text conveys core meanings (gist). To address this, we introduce SciGisPy, a novel evaluation metric inspired by Gist Inference Score (GIS) from Fuzzy-Trace Theory (FTT). SciGisPy measures how well a simplified text facilitates the formation of abstract inferences (gist) necessary for comprehension, especially in the biomedical domain. We revise GIS for this purpose by introducing domain-specific enhancements, including semantic chunking, Information Content (IC) theory, and specialized embeddings, while removing unsuitable indexes. Our experimental evaluation on the Cochrane biomedical text simplification dataset demonstrates that SciGisPy outperforms the original GIS formulation, with a significant increase in correctly identified simplified texts (84% versus 44.8%). The results and a thorough ablation study confirm that SciGisPy better captures the essential meaning of biomedical content, outperforming existing approaches.

TACO: Topics in Algorithmic COde generation dataset

We introduce TACO, an open-source, large-scale code generation dataset, with a focus on the optics of algorithms, designed to provide a more challenging training dataset and evaluation benchmark in the field of code generation models. TACO includes competition-level programming questions that are more challenging, to enhance or evaluate problem understanding and reasoning abilities in real-world programming scenarios. There are 25433 and 1000 coding problems in training and test set, as well as up to 1.55 million diverse solution answers. Moreover, each TACO problem includes several fine-grained labels such as task topics, algorithms, programming skills, and difficulty levels, providing a more precise reference for the training and evaluation of code generation models. The dataset and evaluation scripts are available on Hugging Face Hub (https://huggingface.co/datasets/BAAI/TACO) and Github (https://github.com/FlagOpen/TACO).

DPFNet: A Dual-branch Dilated Network with Phase-aware Fourier Convolution for Low-light Image Enhancement

Low-light image enhancement is a classical computer vision problem aiming to recover normal-exposure images from low-light images. However, convolutional neural networks commonly used in this field are good at sampling low-frequency local structural features in the spatial domain, which leads to unclear texture details of the reconstructed images. To alleviate this problem, we propose a novel module using the Fourier coefficients, which can recover high-quality texture details under the constraint of semantics in the frequency phase and supplement the spatial domain. In addition, we design a simple and efficient module for the image spatial domain using dilated convolutions with different receptive fields to alleviate the loss of detail caused by frequent downsampling. We integrate the above parts into an end-to-end dual branch network and design a novel loss committee and an adaptive fusion module to guide the network to flexibly combine spatial and frequency domain features to generate more pleasing visual effects. Finally, we evaluate the proposed network on public benchmarks. Extensive experimental results show that our method outperforms many existing state-of-the-art ones, showing outstanding performance and potential.

M2TS: Multi-Scale Multi-Modal Approach Based on Transformer for Source Code Summarization

Source code summarization aims to generate natural language descriptions of code snippets. Many existing studies learn the syntactic and semantic knowledge of code snippets from their token sequences and Abstract Syntax Trees (ASTs). They use the learned code representations as input to code summarization models, which can accordingly generate summaries describing source code. Traditional models traverse ASTs as sequences or split ASTs into paths as input. However, the former loses the structural properties of ASTs, and the latter destroys the overall structure of ASTs. Therefore, comprehensively capturing the structural features of ASTs in learning code representations for source code summarization remains a challenging problem to be solved. In this paper, we propose M2TS, a Multi-scale Multi-modal approach based on Transformer for source code Summarization. M2TS uses a multi-scale AST feature extraction method, which can extract the structures of ASTs more completely and accurately at multiple local and global levels. To complement missing semantic information in ASTs, we also obtain code token features, and further combine them with the extracted AST features using a cross modality fusion method that not only fuses the syntactic and contextual semantic information of source code, but also highlights the key features of each modality. We conduct experiments on two Java and one Python datasets, and the experimental results demonstrate that M2TS outperforms current state-of-the-art methods. We release our code at https://github.com/TranSMS/M2TS.

TreeBERT: A Tree-Based Pre-Trained Model for Programming Language

Source code can be parsed into the abstract syntax tree (AST) based on defined syntax rules. However, in pre-training, little work has considered the incorporation of tree structure into the learning process. In this paper, we present TreeBERT, a tree-based pre-trained model for improving programming language-oriented generation tasks. To utilize tree structure, TreeBERT represents the AST corresponding to the code as a set of composition paths and introduces node position embedding. The model is trained by tree masked language modeling (TMLM) and node order prediction (NOP) with a hybrid objective. TMLM uses a novel masking strategy designed according to the tree's characteristics to help the model understand the AST and infer the missing semantics of the AST. With NOP, TreeBERT extracts the syntactical structure by learning the order constraints of nodes in AST. We pre-trained TreeBERT on datasets covering multiple programming languages. On code summarization and code documentation tasks, TreeBERT outperforms other pre-trained models and state-of-the-art models designed for these tasks. Furthermore, TreeBERT performs well when transferred to the pre-trained unseen programming language.

Embedding API Dependency Graph for Neural Code Generation

The problem of code generation from textual program descriptions has long been viewed as a grand challenge in software engineering. In recent years, many deep learning based approaches have been proposed, which can generate a sequence of code from a sequence of textual program description. However, the existing approaches ignore the global relationships among API methods, which are important for understanding the usage of APIs. In this paper, we propose to model the dependencies among API methods as an API dependency graph (ADG) and incorporate the graph embedding into a sequence-to-sequence (Seq2Seq) model. In addition to the existing encoder-decoder structure, a new module named ``embedder" is introduced. In this way, the decoder can utilize both global structural dependencies and textual program description to predict the target code. We conduct extensive code generation experiments on three public datasets and in two programming languages (Python and Java). Our proposed approach, called ADG-Seq2Seq, yields significant improvements over existing state-of-the-art methods and maintains its performance as the length of the target code increases. Extensive ablation tests show that the proposed ADG embedding is effective and outperforms the baselines.