Abstract:Body composition analysis is vital in assessing health conditions such as obesity, sarcopenia, and metabolic syndromes. MRI provides detailed images of skeletal muscle (SKM), visceral adipose tissue (VAT), and subcutaneous adipose tissue (SAT), but their manual segmentation is labor-intensive and limits clinical applicability. This study validates an automated tool for MRI-based 2D body composition analysis- (Data Analysis Facilitation Suite (DAFS) Express), comparing its automated measurements with expert manual segmentations using UK Biobank data. A cohort of 399 participants from the UK Biobank dataset was selected, yielding 423 single L3 slices for analysis. DAFS Express performed automated segmentations of SKM, VAT, and SAT, which were then manually corrected by expert raters for validation. Evaluation metrics included Jaccard coefficients, Dice scores, Intraclass Correlation Coefficients (ICCs), and Bland-Altman Plots to assess segmentation agreement and reliability. High agreements were observed between automated and manual segmentations with mean Jaccard scores: SKM 99.03%, VAT 95.25%, and SAT 99.57%; and mean Dice scores: SKM 99.51%, VAT 97.41%, and SAT 99.78%. Cross-sectional area comparisons showed consistent measurements with automated methods closely matching manual measurements for SKM and SAT, and slightly higher values for VAT (SKM: Auto 132.51 cm^2, Manual 132.36 cm^2; VAT: Auto 137.07 cm^2, Manual 134.46 cm^2; SAT: Auto 203.39 cm^2, Manual 202.85 cm^2). ICCs confirmed strong reliability (SKM: 0.998, VAT: 0.994, SAT: 0.994). Bland-Altman plots revealed minimal biases, and boxplots illustrated distribution similarities across SKM, VAT, and SAT areas. On average DAFS Express took 18 seconds per DICOM. This underscores its potential to streamline image analysis processes in research and clinical settings, enhancing diagnostic accuracy and efficiency.
Abstract:Countless disasters have resulted from climate change, causing severe damage to infrastructure and the economy. These disasters have significant societal impacts, necessitating mental health services for the millions affected. To prepare for and respond effectively to such events, it is important to understand people's emotions and the life incidents they experience before and after a disaster strikes. In this case study, we collected a dataset of approximately 400,000 public tweets related to the storm. Using a BERT-based model, we predicted the emotions associated with each tweet. To efficiently identify these topics, we utilized the Latent Dirichlet Allocation (LDA) technique for topic modeling, which allowed us to bypass manual content analysis and extract meaningful patterns from the data. However, rather than stopping at topic identification like previous methods \cite{math11244910}, we further refined our analysis by integrating Graph Neural Networks (GNN) and Large Language Models (LLM). The GNN was employed to generate embeddings and construct a similarity graph of the tweets, which was then used to optimize clustering. Subsequently, we used an LLM to automatically generate descriptive names for each event cluster, offering critical insights for disaster preparedness and response strategies.
Abstract:In today's rapidly evolving landscape of Artificial Intelligence, large language models (LLMs) have emerged as a vibrant research topic. LLMs find applications in various fields and contribute significantly. Despite their powerful language capabilities, similar to pre-trained language models (PLMs), LLMs still face challenges in remembering events, incorporating new information, and addressing domain-specific issues or hallucinations. To overcome these limitations, researchers have proposed Retrieval-Augmented Generation (RAG) techniques, some others have proposed the integration of LLMs with Knowledge Graphs (KGs) to provide factual context, thereby improving performance and delivering more accurate feedback to user queries. Education plays a crucial role in human development and progress. With the technology transformation, traditional education is being replaced by digital or blended education. Therefore, educational data in the digital environment is increasing day by day. Data in higher education institutions are diverse, comprising various sources such as unstructured/structured text, relational databases, web/app-based API access, etc. Constructing a Knowledge Graph from these cross-data sources is not a simple task. This article proposes a method for automatically constructing a Knowledge Graph from multiple data sources and discusses some initial applications (experimental trials) of KG in conjunction with LLMs for question-answering tasks.
Abstract:This paper presents a deep learning-based system for efficient automatic case summarization. Leveraging state-of-the-art natural language processing techniques, the system offers both supervised and unsupervised methods to generate concise and relevant summaries of lengthy legal case documents. The user-friendly interface allows users to browse the system's database of legal case documents, select their desired case, and choose their preferred summarization method. The system generates comprehensive summaries for each subsection of the legal text as well as an overall summary. This demo streamlines legal case document analysis, potentially benefiting legal professionals by reducing workload and increasing efficiency. Future work will focus on refining summarization techniques and exploring the application of our methods to other types of legal texts.
Abstract:Recently there have been many algorithms proposed for the classification of very high resolution whole slide images (WSIs). These new algorithms are mostly focused on finding novel ways to combine the information from small local patches extracted from the slide, with an emphasis on effectively aggregating more global information for the final predictor. In this paper we thoroughly explore different key design choices for WSI classification algorithms to investigate what matters most for achieving high accuracy. Surprisingly, we found that capturing global context information does not necessarily mean better performance. A model that captures the most global information consistently performs worse than a model that captures less global information. In addition, a very simple multi-instance learning method that captures no global information performs almost as well as models that capture a lot of global information. These results suggest that the most important features for effective WSI classification are captured at the local small patch level, where cell and tissue micro-environment detail is most pronounced. Another surprising finding was that unsupervised pre-training on a larger set of 33 cancers gives significantly worse performance compared to pre-training on a smaller dataset of 7 cancers (including the target cancer). We posit that pre-training on a smaller, more focused dataset allows the feature extractor to make better use of the limited feature space to better discriminate between subtle differences in the input patch.
Abstract:The advent of deep learning has led to a significant gain in machine translation. However, most of the studies required a large parallel dataset which is scarce and expensive to construct and even unavailable for some languages. This paper presents a simple yet effective method to tackle this problem for low-resource languages by augmenting high-quality sentence pairs and training NMT models in a semi-supervised manner. Specifically, our approach combines the cross-entropy loss for supervised learning with KL Divergence for unsupervised fashion given pseudo and augmented target sentences derived from the model. We also introduce a SentenceBERT-based filter to enhance the quality of augmenting data by retaining semantically similar sentence pairs. Experimental results show that our approach significantly improves NMT baselines, especially on low-resource datasets with 0.46--2.03 BLEU scores. We also demonstrate that using unsupervised training for augmented data is more efficient than reusing the ground-truth target sentences for supervised learning.
Abstract:Precisely forecasting wind speed is essential for wind power producers and grid operators. However, this task is challenging due to the stochasticity of wind speed. To accurately predict short-term wind speed under uncertainties, this paper proposed a multi-variable stacked LSTMs model (MSLSTM). The proposed method utilizes multiple historical meteorological variables, such as wind speed, temperature, humidity, pressure, dew point and solar radiation to accurately predict wind speeds. The prediction performance is extensively assessed using real data collected in West Texas, USA. The experimental results show that the proposed MSLSTM can preferably capture and learn uncertainties while output competitive performance.
Abstract:Understanding and accurately predicting within-field spatial variability of crop yield play a key role in site-specific management of crop inputs such as irrigation water and fertilizer for optimized crop production. However, such a task is challenged by the complex interaction between crop growth and environmental and managerial factors, such as climate, soil conditions, tillage, and irrigation. In this paper, we present a novel Spatial-temporal Multi-Task Learning algorithms for within-field crop yield prediction in west Texas from 2001 to 2003. This algorithm integrates multiple heterogeneous data sources to learn different features simultaneously, and to aggregate spatial-temporal features by introducing a weighted regularizer to the loss functions. Our comprehensive experimental results consistently outperform the results of other conventional methods, and suggest a promising approach, which improves the landscape of crop prediction research fields.
Abstract:Opioid addiction is a severe public health threat in the U.S, causing massive deaths and many social problems. Accurate relapse prediction is of practical importance for recovering patients since relapse prediction promotes timely relapse preventions that help patients stay clean. In this paper, we introduce a Generative Adversarial Networks (GAN) model to predict the addiction relapses based on sentiment images and social influences. Experimental results on real social media data from Reddit.com demonstrate that the GAN model delivers a better performance than comparable alternative techniques. The sentiment images generated by the model show that relapse is closely connected with two emotions `joy' and `negative'. This work is one of the first attempts to predict relapses using massive social media data and generative adversarial nets. The proposed method, combined with knowledge of social media mining, has the potential to revolutionize the practice of opioid addiction prevention and treatment.
Abstract:A crucial and time-sensitive task when any disaster occurs is to rescue victims and distribute resources to the right groups and locations. This task is challenging in populated urban areas, due to the huge burst of help requests generated in a very short period. To improve the efficiency of the emergency response in the immediate aftermath of a disaster, we propose a heuristic multi-agent reinforcement learning scheduling algorithm, named as ResQ, which can effectively schedule the rapid deployment of volunteers to rescue victims in dynamic settings. The core concept is to quickly identify victims and volunteers from social network data and then schedule rescue parties with an adaptive learning algorithm. This framework performs two key functions: 1) identify trapped victims and rescue volunteers, and 2) optimize the volunteers' rescue strategy in a complex time-sensitive environment. The proposed ResQ algorithm can speed up the training processes through a heuristic function which reduces the state-action space by identifying the set of particular actions over others. Experimental results showed that the proposed heuristic multi-agent reinforcement learning based scheduling outperforms several state-of-art methods, in terms of both reward rate and response times.