COMET:Combined Matrix for Elucidating Targets

Identifying the interaction targets of bioactive compounds is a foundational element for deciphering their pharmacological effects. Target prediction algorithms equip researchers with an effective tool to rapidly scope and explore potential targets. Here, we introduce the COMET, a multi-technological modular target prediction tool that provides comprehensive predictive insights, including similar active compounds, three-dimensional predicted binding modes, and probability scores, all within an average processing time of less than 10 minutes per task. With meticulously curated data, the COMET database encompasses 990,944 drug-target interaction pairs and 45,035 binding pockets, enabling predictions for 2,685 targets, which span confirmed and exploratory therapeutic targets for human diseases. In comparative testing using datasets from ChEMBL and BindingDB, COMET outperformed five other well-known algorithms, offering nearly an 80% probability of accurately identifying at least one true target within the top 15 predictions for a given compound. COMET also features a user-friendly web server, accessible freely at https://www.pdbbind-plus.org.cn/comet.

NeurDB: On the Design and Implementation of an AI-powered Autonomous Database

Databases are increasingly embracing AI to provide autonomous system optimization and intelligent in-database analytics, aiming to relieve end-user burdens across various industry sectors. Nonetheless, most existing approaches fail to account for the dynamic nature of databases, which renders them ineffective for real-world applications characterized by evolving data and workloads. This paper introduces NeurDB, an AI-powered autonomous database that deepens the fusion of AI and databases with adaptability to data and workload drift. NeurDB establishes a new in-database AI ecosystem that seamlessly integrates AI workflows within the database. This integration enables efficient and effective in-database AI analytics and fast-adaptive learned system components. Empirical evaluations demonstrate that NeurDB substantially outperforms existing solutions in managing AI analytics tasks, with the proposed learned components more effectively handling environmental dynamism than state-of-the-art approaches.

Heterogeneity-Informed Meta-Parameter Learning for Spatiotemporal Time Series Forecasting

Spatiotemporal time series forecasting plays a key role in a wide range of real-world applications. While significant progress has been made in this area, fully capturing and leveraging spatiotemporal heterogeneity remains a fundamental challenge. Therefore, we propose a novel Heterogeneity-Informed Meta-Parameter Learning scheme. Specifically, our approach implicitly captures spatiotemporal heterogeneity through learning spatial and temporal embeddings, which can be viewed as a clustering process. Then, a novel spatiotemporal meta-parameter learning paradigm is proposed to learn spatiotemporal-specific parameters from meta-parameter pools, which is informed by the captured heterogeneity. Based on these ideas, we develop a Heterogeneity-Informed Spatiotemporal Meta-Network (HimNet) for spatiotemporal time series forecasting. Extensive experiments on five widely-used benchmarks demonstrate our method achieves state-of-the-art performance while exhibiting superior interpretability. Our code is available at https://github.com/XDZhelheim/HimNet.

Spatio-Temporal-Decoupled Masked Pre-training for Traffic Forecasting

Accurate forecasting of multivariate traffic flow time series remains challenging due to substantial spatio-temporal heterogeneity and complex long-range correlative patterns. To address this, we propose Spatio-Temporal-Decoupled Masked Pre-training (STD-MAE), a novel framework that employs masked autoencoders to learn and encode complex spatio-temporal dependencies via pre-training. Specifically, we use two decoupled masked autoencoders to reconstruct the traffic data along spatial and temporal axes using a self-supervised pre-training approach. These mask reconstruction mechanisms capture the long-range correlations in space and time separately. The learned hidden representations are then used to augment the downstream spatio-temporal traffic predictor. A series of quantitative and qualitative evaluations on four widely-used traffic benchmarks (PEMS03, PEMS04, PEMS07, and PEMS08) are conducted to verify the state-of-the-art performance, with STD-MAE explicitly enhancing the downstream spatio-temporal models' ability to capture long-range intricate spatial and temporal patterns. Codes are available at https://github.com/Jimmy-7664/STD_MAE.