MulModSeg: Enhancing Unpaired Multi-Modal Medical Image Segmentation with Modality-Conditioned Text Embedding and Alternating Training

In the diverse field of medical imaging, automatic segmentation has numerous applications and must handle a wide variety of input domains, such as different types of Computed Tomography (CT) scans and Magnetic Resonance (MR) images. This heterogeneity challenges automatic segmentation algorithms to maintain consistent performance across different modalities due to the requirement for spatially aligned and paired images. Typically, segmentation models are trained using a single modality, which limits their ability to generalize to other types of input data without employing transfer learning techniques. Additionally, leveraging complementary information from different modalities to enhance segmentation precision often necessitates substantial modifications to popular encoder-decoder designs, such as introducing multiple branched encoding or decoding paths for each modality. In this work, we propose a simple Multi-Modal Segmentation (MulModSeg) strategy to enhance medical image segmentation across multiple modalities, specifically CT and MR. It incorporates two key designs: a modality-conditioned text embedding framework via a frozen text encoder that adds modality awareness to existing segmentation frameworks without significant structural modifications or computational overhead, and an alternating training procedure that facilitates the integration of essential features from unpaired CT and MR inputs. Through extensive experiments with both Fully Convolutional Network and Transformer-based backbones, MulModSeg consistently outperforms previous methods in segmenting abdominal multi-organ and cardiac substructures for both CT and MR modalities. The code is available in this {\href{https://github.com/ChengyinLee/MulModSeg_2024}{link}}.

Learning to Poison Large Language Models During Instruction Tuning

The advent of Large Language Models (LLMs) has marked significant achievements in language processing and reasoning capabilities. Despite their advancements, LLMs face vulnerabilities to data poisoning attacks, where adversaries insert backdoor triggers into training data to manipulate outputs for malicious purposes. This work further identifies additional security risks in LLMs by designing a new data poisoning attack tailored to exploit the instruction tuning process. We propose a novel gradient-guided backdoor trigger learning approach to identify adversarial triggers efficiently, ensuring an evasion of detection by conventional defenses while maintaining content integrity. Through experimental validation across various LLMs and tasks, our strategy demonstrates a high success rate in compromising model outputs; poisoning only 1\% of 4,000 instruction tuning samples leads to a Performance Drop Rate (PDR) of around 80\%. Our work highlights the need for stronger defenses against data poisoning attack, offering insights into safeguarding LLMs against these more sophisticated attacks. The source code can be found on this GitHub repository: https://github.com/RookieZxy/GBTL/blob/main/README.md.

MFABA: A More Faithful and Accelerated Boundary-based Attribution Method for Deep Neural Networks

To better understand the output of deep neural networks (DNN), attribution based methods have been an important approach for model interpretability, which assign a score for each input dimension to indicate its importance towards the model outcome. Notably, the attribution methods use the axioms of sensitivity and implementation invariance to ensure the validity and reliability of attribution results. Yet, the existing attribution methods present challenges for effective interpretation and efficient computation. In this work, we introduce MFABA, an attribution algorithm that adheres to axioms, as a novel method for interpreting DNN. Additionally, we provide the theoretical proof and in-depth analysis for MFABA algorithm, and conduct a large scale experiment. The results demonstrate its superiority by achieving over 101.5142 times faster speed than the state-of-the-art attribution algorithms. The effectiveness of MFABA is thoroughly evaluated through the statistical analysis in comparison to other methods, and the full implementation package is open-source at: https://github.com/LMBTough/MFABA

FedDRO: Federated Compositional Optimization for Distributionally Robust Learning

Recently, compositional optimization (CO) has gained popularity because of its applications in distributionally robust optimization (DRO) and many other machine learning problems. Large-scale and distributed availability of data demands the development of efficient federated learning (FL) algorithms for solving CO problems. Developing FL algorithms for CO is particularly challenging because of the compositional nature of the objective. Moreover, current state-of-the-art methods to solve such problems rely on large batch gradients (depending on the solution accuracy) not feasible for most practical settings. To address these challenges, in this work, we propose efficient FedAvg-type algorithms for solving non-convex CO in the FL setting. We first establish that vanilla FedAvg is not suitable to solve distributed CO problems because of the data heterogeneity in the compositional objective at each client which leads to the amplification of bias in the local compositional gradient estimates. To this end, we propose a novel FL framework FedDRO that utilizes the DRO problem structure to design a communication strategy that allows FedAvg to control the bias in the estimation of the compositional gradient. A key novelty of our work is to develop solution accuracy-independent algorithms that do not require large batch gradients (and function evaluations) for solving federated CO problems. We establish $\mathcal{O}(\epsilon^{-2})$ sample and $\mathcal{O}(\epsilon^{-3/2})$ communication complexity in the FL setting while achieving linear speedup with the number of clients. We corroborate our theoretical findings with empirical studies on large-scale DRO problems.

GeoSAM: Fine-tuning SAM with Sparse and Dense Visual Prompting for Automated Segmentation of Mobility Infrastructure

The Segment Anything Model (SAM) has shown impressive performance when applied to natural image segmentation. However, it struggles with geographical images like aerial and satellite imagery, especially when segmenting mobility infrastructure including roads, sidewalks, and crosswalks. This inferior performance stems from the narrow features of these objects, their textures blending into the surroundings, and interference from objects like trees, buildings, vehicles, and pedestrians - all of which can disorient the model to produce inaccurate segmentation maps. To address these challenges, we propose Geographical SAM (GeoSAM), a novel SAM-based framework that implements a fine-tuning strategy using the dense visual prompt from zero-shot learning, and the sparse visual prompt from a pre-trained CNN segmentation model. The proposed GeoSAM outperforms existing approaches for geographical image segmentation, specifically by 20%, 14.29%, and 17.65% for road infrastructure, pedestrian infrastructure, and on average, respectively, representing a momentous leap in leveraging foundation models to segment mobility infrastructure including both road and pedestrian infrastructure in geographical images.

Hijacking Large Language Models via Adversarial In-Context Learning

In-context learning (ICL) has emerged as a powerful paradigm leveraging LLMs for specific tasks by utilizing labeled examples as demonstrations in the precondition prompts. Despite its promising performance, ICL suffers from instability with the choice and arrangement of examples. Additionally, crafted adversarial attacks pose a notable threat to the robustness of ICL. However, existing attacks are either easy to detect, rely on external models, or lack specificity towards ICL. To address these issues, this work introduces a novel transferable attack for ICL, aiming to hijack LLMs to generate the targeted response. The proposed LLM hijacking attack leverages a gradient-based prompt search method to learn and append imperceptible adversarial suffixes to the in-context demonstrations. Extensive experimental results on various tasks and datasets demonstrate the effectiveness of our LLM hijacking attack, resulting in a distracted attention towards adversarial tokens, consequently leading to the targeted unwanted outputs.

Empirical Evaluation of the Segment Anything Model (SAM) for Brain Tumor Segmentation

Brain tumor segmentation presents a formidable challenge in the field of Medical Image Segmentation. While deep-learning models have been useful, human expert segmentation remains the most accurate method. The recently released Segment Anything Model (SAM) has opened up the opportunity to apply foundation models to this difficult task. However, SAM was primarily trained on diverse natural images. This makes applying SAM to biomedical segmentation, such as brain tumors with less defined boundaries, challenging. In this paper, we enhanced SAM's mask decoder using transfer learning with the Decathlon brain tumor dataset. We developed three methods to encapsulate the four-dimensional data into three dimensions for SAM. An on-the-fly data augmentation approach has been used with a combination of rotations and elastic deformations to increase the size of the training dataset. Two key metrics: the Dice Similarity Coefficient (DSC) and the Hausdorff Distance 95th Percentile (HD95), have been applied to assess the performance of our segmentation models. These metrics provided valuable insights into the quality of the segmentation results. In our evaluation, we compared this improved model to two benchmarks: the pretrained SAM and the widely used model, nnUNetv2. We find that the improved SAM shows considerable improvement over the pretrained SAM, while nnUNetv2 outperformed the improved SAM in terms of overall segmentation accuracy. Nevertheless, the improved SAM demonstrated slightly more consistent results than nnUNetv2, especially on challenging cases that can lead to larger Hausdorff distances. In the future, more advanced techniques can be applied in order to further improve the performance of SAM on brain tumor segmentation.

Interpretability-Aware Vision Transformer

Vision Transformers (ViTs) have become prominent models for solving various vision tasks. However, the interpretability of ViTs has not kept pace with their promising performance. While there has been a surge of interest in developing {\it post hoc} solutions to explain ViTs' outputs, these methods do not generalize to different downstream tasks and various transformer architectures. Furthermore, if ViTs are not properly trained with the given data and do not prioritize the region of interest, the {\it post hoc} methods would be less effective. Instead of developing another {\it post hoc} approach, we introduce a novel training procedure that inherently enhances model interpretability. Our interpretability-aware ViT (IA-ViT) draws inspiration from a fresh insight: both the class patch and image patches consistently generate predicted distributions and attention maps. IA-ViT is composed of a feature extractor, a predictor, and an interpreter, which are trained jointly with an interpretability-aware training objective. Consequently, the interpreter simulates the behavior of the predictor and provides a faithful explanation through its single-head self-attention mechanism. Our comprehensive experimental results demonstrate the effectiveness of IA-ViT in several image classification tasks, with both qualitative and quantitative evaluations of model performance and interpretability. Source code is available from: https://github.com/qiangyao1988/IA-ViT.

Auto-Prompting SAM for Mobile Friendly 3D Medical Image Segmentation

The Segment Anything Model (SAM) has rapidly been adopted for segmenting a wide range of natural images. However, recent studies have indicated that SAM exhibits subpar performance on 3D medical image segmentation tasks. In addition to the domain gaps between natural and medical images, disparities in the spatial arrangement between 2D and 3D images, the substantial computational burden imposed by powerful GPU servers, and the time-consuming manual prompt generation impede the extension of SAM to a broader spectrum of medical image segmentation applications. To address these challenges, in this work, we introduce a novel method, AutoSAM Adapter, designed specifically for 3D multi-organ CT-based segmentation. We employ parameter-efficient adaptation techniques in developing an automatic prompt learning paradigm to facilitate the transformation of the SAM model's capabilities to 3D medical image segmentation, eliminating the need for manually generated prompts. Furthermore, we effectively transfer the acquired knowledge of the AutoSAM Adapter to other lightweight models specifically tailored for 3D medical image analysis, achieving state-of-the-art (SOTA) performance on medical image segmentation tasks. Through extensive experimental evaluation, we demonstrate the AutoSAM Adapter as a critical foundation for effectively leveraging the emerging ability of foundation models in 2D natural image segmentation for 3D medical image segmentation.

Fairness-aware Vision Transformer via Debiased Self-Attention

Vision Transformer (ViT) has recently gained significant interest in solving computer vision (CV) problems due to its capability of extracting informative features and modeling long-range dependencies through the self-attention mechanism. To fully realize the advantages of ViT in real-world applications, recent works have explored the trustworthiness of ViT, including its robustness and explainability. However, another desiderata, fairness has not yet been adequately addressed in the literature. We establish that the existing fairness-aware algorithms (primarily designed for CNNs) do not perform well on ViT. This necessitates the need for developing our novel framework via Debiased Self-Attention (DSA). DSA is a fairness-through-blindness approach that enforces ViT to eliminate spurious features correlated with the sensitive attributes for bias mitigation. Notably, adversarial examples are leveraged to locate and mask the spurious features in the input image patches. In addition, DSA utilizes an attention weights alignment regularizer in the training objective to encourage learning informative features for target prediction. Importantly, our DSA framework leads to improved fairness guarantees over prior works on multiple prediction tasks without compromising target prediction performance