BioAgents: Democratizing Bioinformatics Analysis with Multi-Agent Systems

Creating end-to-end bioinformatics workflows requires diverse domain expertise, which poses challenges for both junior and senior researchers as it demands a deep understanding of both genomics concepts and computational techniques. While large language models (LLMs) provide some assistance, they often fall short in providing the nuanced guidance needed to execute complex bioinformatics tasks, and require expensive computing resources to achieve high performance. We thus propose a multi-agent system built on small language models, fine-tuned on bioinformatics data, and enhanced with retrieval augmented generation (RAG). Our system, BioAgents, enables local operation and personalization using proprietary data. We observe performance comparable to human experts on conceptual genomics tasks, and suggest next steps to enhance code generation capabilities.

Once More, With Feeling: Measuring Emotion of Acting Performances in Contemporary American Film

Narrative film is a composition of writing, cinematography, editing, and performance. While much computational work has focused on the writing or visual style in film, we conduct in this paper a computational exploration of acting performance. Applying speech emotion recognition models and a variationist sociolinguistic analytical framework to a corpus of popular, contemporary American film, we find narrative structure, diachronic shifts, and genre- and dialogue-based constraints located in spoken performances.

Subversive Characters and Stereotyping Readers: Characterizing Queer Relationalities with Dialogue-Based Relation Extraction

Television is often seen as a site for subcultural identification and subversive fantasy, including in queer cultures. How might we measure subversion, or the degree to which the depiction of social relationship between a dyad (e.g. two characters who are colleagues) deviates from its typical representation on TV? To explore this question, we introduce the task of stereotypic relationship extraction. Built on cognitive stylistics, linguistic anthropology, and dialogue relation extraction, in this paper, we attempt to model the cognitive process of stereotyping TV characters in dialogic interactions. Given a dyad, we want to predict: what social relationship do the speakers exhibit through their words? Subversion is then characterized by the discrepancy between the distribution of the model's predictions and the ground truth labels. To demonstrate the usefulness of this task and gesture at a methodological intervention, we enclose four case studies to characterize the representation of queer relationalities in the Big Bang Theory, Frasier, and Gilmore Girls, as we explore the suspicious and reparative modes of reading with our computational methods.

On Classification with Large Language Models in Cultural Analytics

In this work, we survey the way in which classification is used as a sensemaking practice in cultural analytics, and assess where large language models can fit into this landscape. We identify ten tasks supported by publicly available datasets on which we empirically assess the performance of LLMs compared to traditional supervised methods, and explore the ways in which LLMs can be employed for sensemaking goals beyond mere accuracy. We find that prompt-based LLMs are competitive with traditional supervised models for established tasks, but perform less well on de novo tasks. In addition, LLMs can assist sensemaking by acting as an intermediary input to formal theory testing.

AboutMe: Using Self-Descriptions in Webpages to Document the Effects of English Pretraining Data Filters

Large language models' (LLMs) abilities are drawn from their pretraining data, and model development begins with data curation. However, decisions around what data is retained or removed during this initial stage is under-scrutinized. In our work, we ground web text, which is a popular pretraining data source, to its social and geographic contexts. We create a new dataset of 10.3 million self-descriptions of website creators, and extract information about who they are and where they are from: their topical interests, social roles, and geographic affiliations. Then, we conduct the first study investigating how ten "quality" and English language identification (langID) filters affect webpages that vary along these social dimensions. Our experiments illuminate a range of implicit preferences in data curation: we show that some quality classifiers act like topical domain filters, and langID can overlook English content from some regions of the world. Overall, we hope that our work will encourage a new line of research on pretraining data curation practices and its social implications.

Social Meme-ing: Measuring Linguistic Variation in Memes

Much work in the space of NLP has used computational methods to explore sociolinguistic variation in text. In this paper, we argue that memes, as multimodal forms of language comprised of visual templates and text, also exhibit meaningful social variation. We construct a computational pipeline to cluster individual instances of memes into templates and semantic variables, taking advantage of their multimodal structure in doing so. We apply this method to a large collection of meme images from Reddit and make available the resulting \textsc{SemanticMemes} dataset of 3.8M images clustered by their semantic function. We use these clusters to analyze linguistic variation in memes, discovering not only that socially meaningful variation in meme usage exists between subreddits, but that patterns of meme innovation and acculturation within these communities align with previous findings on written language.

Grounding Characters and Places in Narrative Texts

Tracking characters and locations throughout a story can help improve the understanding of its plot structure. Prior research has analyzed characters and locations from text independently without grounding characters to their locations in narrative time. Here, we address this gap by proposing a new spatial relationship categorization task. The objective of the task is to assign a spatial relationship category for every character and location co-mention within a window of text, taking into consideration linguistic context, narrative tense, and temporal scope. To this end, we annotate spatial relationships in approximately 2500 book excerpts and train a model using contextual embeddings as features to predict these relationships. When applied to a set of books, this model allows us to test several hypotheses on mobility and domestic space, revealing that protagonists are more mobile than non-central characters and that women as characters tend to occupy more interior space than men. Overall, our work is the first step towards joint modeling and analysis of characters and places in narrative text.

Dramatic Conversation Disentanglement

We present a new dataset for studying conversation disentanglement in movies and TV series. While previous work has focused on conversation disentanglement in IRC chatroom dialogues, movies and TV shows provide a space for studying complex pragmatic patterns of floor and topic change in face-to-face multi-party interactions. In this work, we draw on theoretical research in sociolinguistics, sociology, and film studies to operationalize a conversational thread (including the notion of a floor change) in dramatic texts, and use that definition to annotate a dataset of 10,033 dialogue turns (comprising 2,209 threads) from 831 movies. We compare the performance of several disentanglement models on this dramatic dataset, and apply the best-performing model to disentangle 808 movies. We see that, contrary to expectation, average thread lengths do not decrease significantly over the past 40 years, and characters portrayed by actors who are women, while underrepresented, initiate more new conversational threads relative to their speaking time.

Speak, Memory: An Archaeology of Books Known to ChatGPT/GPT-4

In this work, we carry out a data archaeology to infer books that are known to ChatGPT and GPT-4 using a name cloze membership inference query. We find that OpenAI models have memorized a wide collection of copyrighted materials, and that the degree of memorization is tied to the frequency with which passages of those books appear on the web. The ability of these models to memorize an unknown set of books complicates assessments of measurement validity for cultural analytics by contaminating test data; we show that models perform much better on memorized books than on non-memorized books for downstream tasks. We argue that this supports a case for open models whose training data is known.

Words as Gatekeepers: Measuring Discipline-specific Terms and Meanings in Scholarly Publications

Scholarly text is often laden with jargon, or specialized language that divides disciplines. We extend past work that characterizes science at the level of word types, by using BERT-based word sense induction to find additional words that are widespread but overloaded with different uses across fields. We define scholarly jargon as discipline-specific word types and senses, and estimate its prevalence across hundreds of fields using interpretable, information-theoretic metrics. We demonstrate the utility of our approach for science of science and computational sociolinguistics by highlighting two key social implications. First, we measure audience design, and find that most fields reduce jargon when publishing in general-purpose journals, but some do so more than others. Second, though jargon has varying correlation with articles' citation rates within fields, it nearly always impedes interdisciplinary impact. Broadly, our measurements can inform ways in which language could be revised to serve as a bridge rather than a barrier in science.