Binary Latent Protein Fitness Landscapes for Quantum Annealing Optimization

We propose Q-BIOLAT, a framework for modeling and optimizing protein fitness landscapes in binary latent spaces. Starting from protein sequences, we leverage pretrained protein language models to obtain continuous embeddings, which are then transformed into compact binary latent representations. In this space, protein fitness is approximated using a quadratic unconstrained binary optimization (QUBO) model, enabling efficient combinatorial search via classical heuristics such as simulated annealing and genetic algorithms. On the ProteinGym benchmark, we demonstrate that Q-BIOLAT captures meaningful structure in protein fitness landscapes and enables the identification of high-fitness variants. Despite using a simple binarization scheme, our method consistently retrieves sequences whose nearest neighbors lie within the top fraction of the training fitness distribution, particularly under the strongest configurations. We further show that different optimization strategies exhibit distinct behaviors, with evolutionary search performing better in higher-dimensional latent spaces and local search remaining competitive in preserving realistic sequences. Beyond its empirical performance, Q-BIOLAT provides a natural bridge between protein representation learning and combinatorial optimization. By formulating protein fitness as a QUBO problem, our framework is directly compatible with emerging quantum annealing hardware, opening new directions for quantum-assisted protein engineering. Our implementation is publicly available at: https://github.com/HySonLab/Q-BIOLAT

DiFlowDubber: Discrete Flow Matching for Automated Video Dubbing via Cross-Modal Alignment and Synchronization

Video dubbing has broad applications in filmmaking, multimedia creation, and assistive speech technology. Existing approaches either train directly on limited dubbing datasets or adopt a two-stage pipeline that adapts pre-trained text-to-speech (TTS) models, which often struggle to produce expressive prosody, rich acoustic characteristics, and precise synchronization. To address these issues, we propose DiFlowDubber with a novel two-stage training framework that effectively transfers knowledge from a pre-trained TTS model to video-driven dubbing, with a discrete flow matching generative backbone. Specifically, we design a FaPro module that captures global prosody and stylistic cues from facial expressions and leverages this information to guide the modeling of subsequent speech attributes. To ensure precise speech-lip synchronization, we introduce a Synchronizer module that bridges the modality gap among text, video, and speech, thereby improving cross-modal alignment and generating speech that is temporally synchronized with lip movements. Experiments on two primary benchmark datasets demonstrate that DiFlowDubber outperforms previous methods across multiple metrics.

Halfway to 3D: Ensembling 2.5D and 3D Models for Robust COVID-19 CT Diagnosis

We propose a deep learning framework for COVID-19 detection and disease classification from chest CT scans that integrates both 2.5D and 3D representations to capture complementary slice-level and volumetric information. The 2.5D branch processes multi-view CT slices (axial, coronal, sagittal) using a DINOv3 vision transformer to extract robust visual features, while the 3D branch employs a ResNet-18 architecture to model volumetric context and is pretrained with Variance Risk Extrapolation (VREx) followed by supervised contrastive learning to improve cross-source robustness. Predictions from both branches are combined through logit-level ensemble inference. Experiments on the PHAROS-AIF-MIH benchmark demonstrate the effectiveness of the proposed approach: for binary COVID-19 detection, the ensemble achieves 94.48% accuracy and a 0.9426 Macro F1-score, outperforming both individual models, while for multi-class disease classification the 2.5D DINOv3 model achieves the best performance with 79.35% accuracy and a 0.7497 Macro F1-score. These results highlight the benefit of combining pretrained slice-based representations with volumetric modeling for robust multi-source medical imaging analysis. Code is available at https://github.com/HySonLab/PHAROS-AIF-MIH

Self-Evolving Multi-Agent Network for Industrial IoT Predictive Maintenance

Industrial IoT predictive maintenance requires systems capable of real-time anomaly detection without sacrificing interpretability or demanding excessive computational resources. Traditional approaches rely on static, offline-trained models that cannot adapt to evolving operational conditions, while LLM-based monolithic systems demand prohibitive memory and latency, rendering them impractical for on-site edge deployment. We introduce SEMAS, a self-evolving hierarchical multi-agent system that distributes specialized agents across Edge, Fog, and Cloud computational tiers. Edge agents perform lightweight feature extraction and pre-filtering; Fog agents execute diversified ensemble detection with dynamic consensus voting; and Cloud agents continuously optimize system policies via Proximal Policy Optimization (PPO) while maintaining asynchronous, non-blocking inference. The framework incorporates LLM-based response generation for explainability and federated knowledge aggregation for adaptive policy distribution. This architecture enables resource-aware specialization without sacrificing real-time performance or model interpretability. Empirical evaluation on two industrial benchmarks (Boiler Emulator and Wind Turbine) demonstrates that SEMAS achieves superior anomaly detection performance with exceptional stability under adaptation, sustains prediction accuracy across evolving operational contexts, and delivers substantial latency improvements enabling genuine real-time deployment. Ablation studies confirm that PPO-driven policy evolution, consensus voting, and federated aggregation each contribute materially to system effectiveness. These findings indicate that resource-aware, self-evolving 1multi-agent coordination is essential for production-ready industrial IoT predictive maintenance under strict latency and explainability constraints.

Efficient Deep Learning for Medical Imaging: Bridging the Gap Between High-Performance AI and Clinical Deployment

Deep learning has revolutionized medical image analysis, playing a vital role in modern clinical applications. However, the deployment of large-scale models in real-world clinical settings remains challenging due to high computational costs, latency constraints, and patient data privacy concerns associated with cloud-based processing. To address these bottlenecks, this review provides a comprehensive synthesis of efficient and lightweight deep learning architectures specifically tailored for the medical domain. We categorize the landscape of modern efficient models into three primary streams: Convolutional Neural Networks (CNNs), Lightweight Transformers, and emerging Linear Complexity Models. Furthermore, we examine key model compression strategies (including pruning, quantization, knowledge distillation, and low-rank factorization) and evaluate their efficacy in maintaining diagnostic performance while reducing hardware requirements. By identifying current limitations and discussing the transition toward on-device intelligence, this review serves as a roadmap for researchers and practitioners aiming to bridge the gap between high-performance AI and resource-constrained clinical environments.

Multimodal Machine Learning for Soft High-k Elastomers under Data Scarcity

Dielectric materials are critical building blocks for modern electronics such as sensors, actuators, and transistors. With the rapid recent advance in soft and stretchable electronics for emerging human- and robot-interfacing applications, there is a surging need for high-performance dielectric elastomers. However, it remains a grand challenge to develop soft elastomers that simultaneously possess high dielectric constants (k, related to energy storage capacity) and low Young's moduli (E, related to mechanical flexibility). While some new elastomer designs have been reported in individual (mostly one-off) studies, almost no structured dataset is currently available for dielectric elastomers that systematically encompasses their molecular sequence, dielectric, and mechanical properties. Within this context, we curate a compact, high-quality dataset of acrylate-based dielectric elastomers, one of the most widely explored elastomer backbones due to its versatile chemistry and molecular design flexibility, by screening and aggregating experimental results from the literature over the past 10 years. Building on this dataset, we propose a multimodal learning framework that leverages large-scale pretrained polymer representations from graph- and sequence-based encoders. These pretrained embeddings transfer rich chemical and structural knowledge from vast polymer corpora, enabling accurate few-shot prediction of both dielectric and mechanical properties from molecular sequences. Our results represent a new paradigm for transferring knowledge from pretrained multimodal models to overcome severe data scarcity, which can be readily translated to other polymer backbones (e.g., silicones, urethanes) and thus accelerate data-efficient discovery of soft high-k dielectric elastomers. Our source code and dataset are publicly available at https://github.com/HySonLab/Polymers

RedBench: A Universal Dataset for Comprehensive Red Teaming of Large Language Models

As large language models (LLMs) become integral to safety-critical applications, ensuring their robustness against adversarial prompts is paramount. However, existing red teaming datasets suffer from inconsistent risk categorizations, limited domain coverage, and outdated evaluations, hindering systematic vulnerability assessments. To address these challenges, we introduce RedBench, a universal dataset aggregating 37 benchmark datasets from leading conferences and repositories, comprising 29,362 samples across attack and refusal prompts. RedBench employs a standardized taxonomy with 22 risk categories and 19 domains, enabling consistent and comprehensive evaluations of LLM vulnerabilities. We provide a detailed analysis of existing datasets, establish baselines for modern LLMs, and open-source the dataset and evaluation code. Our contributions facilitate robust comparisons, foster future research, and promote the development of secure and reliable LLMs for real-world deployment. Code: https://github.com/knoveleng/redeval

DiFlow-TTS: Discrete Flow Matching with Factorized Speech Tokens for Low-Latency Zero-Shot Text-To-Speech

Zero-shot Text-to-Speech (TTS) aims to synthesize high-quality speech that mimics the voice of an unseen speaker using only a short reference sample, requiring not only speaker adaptation but also accurate modeling of prosodic attributes. Recent approaches based on language models, diffusion, and flow matching have shown promising results in zero-shot TTS, but still suffer from slow inference and repetition artifacts. Discrete codec representations have been widely adopted for speech synthesis, and recent works have begun to explore diffusion models in purely discrete settings, suggesting the potential of discrete generative modeling for speech synthesis. However, existing flow-matching methods typically embed these discrete tokens into a continuous space and apply continuous flow matching, which may not fully leverage the advantages of discrete representations. To address these challenges, we introduce DiFlow-TTS, which, to the best of our knowledge, is the first model to explore purely Discrete Flow Matching for speech synthesis. DiFlow-TTS explicitly models factorized speech attributes within a compact and unified architecture. It leverages in-context learning by conditioning on textual content, along with prosodic and acoustic attributes extracted from a reference speech, enabling effective attribute cloning in a zero-shot setting. In addition, the model employs a factorized flow prediction mechanism with distinct heads for prosody and acoustic details, allowing it to learn aspect-specific distributions. Experimental results demonstrate that DiFlow-TTS achieves promising performance in several key metrics, including naturalness, prosody, preservation of speaker style, and energy control. It also maintains a compact model size and achieves low-latency inference, generating speech up to 25.8 times faster than the latest existing baselines.

LINKER: Learning Interactions Between Functional Groups and Residues With Chemical Knowledge-Enhanced Reasoning and Explainability

Accurate identification of interactions between protein residues and ligand functional groups is essential to understand molecular recognition and guide rational drug design. Existing deep learning approaches for protein-ligand interpretability often rely on 3D structural input or use distance-based contact labels, limiting both their applicability and biological relevance. We introduce LINKER, the first sequence-based model to predict residue-functional group interactions in terms of biologically defined interaction types, using only protein sequences and the ligand SMILES as input. LINKER is trained with structure-supervised attention, where interaction labels are derived from 3D protein-ligand complexes via functional group-based motif extraction. By abstracting ligand structures into functional groups, the model focuses on chemically meaningful substructures while predicting interaction types rather than mere spatial proximity. Crucially, LINKER requires only sequence-level input at inference time, enabling large-scale application in settings where structural data is unavailable. Experiments on the LP-PDBBind benchmark demonstrate that structure-informed supervision over functional group abstractions yields interaction predictions closely aligned with ground-truth biochemical annotations.

Repeton: Structured Bug Repair with ReAct-Guided Patch-and-Test Cycles

Large Language Models (LLMs) have shown strong capabilities in code generation and comprehension, yet their application to complex software engineering tasks often suffers from low precision and limited interpretability. We present Repeton, a fully open-source framework that leverages LLMs for precise and automated code manipulation in real-world Git repositories. Rather than generating holistic fixes, Repeton operates through a structured patch-and-test pipeline: it iteratively diagnoses issues, proposes code changes, and validates each patch through automated testing. This stepwise process is guided by lightweight heuristics and development tools, avoiding reliance on embedding-based retrieval systems. Evaluated on the SWE-bench Lite benchmark, our method shows good performance compared to RAG-based methods in both patch validity and interpretability. By decomposing software engineering tasks into modular, verifiable stages, Repeton provides a practical path toward scalable and transparent autonomous debugging.